Rouse G.W. Carvajal J.I. Wilson N.G. Reich M. Paulay G. Kerr A.M. Miller A.K. Miller A.K., Kerr A.M., Paulay G., Reich M., Wilson N.G., Carvajal J.I., & Rouse G.W. 2017-04-20 Molecular Phylogenetics and Evolution Molecular clock Nomenclature Phylogeny Sea cucumbers Holothuroidea Molecular phylogeny of extant Holothuroidea (Echinodermata) Miller A.K., Kerr A.M., Paulay G., Reich M., Wilson N.G., Carvajal J.I., & Rouse G.W. 2017. Molecular phylogeny of extant Holothuroidea (Echinodermata). Molecular Phylogenetics and Evolution, 111: 110-131. pythonVersion 2.7.9 pythonImplementation CPython Animals false ^dc:contributor ^dc:creator ^dc:date ^dc:publisher ^dc:subject ^dc:title ^dcterms:bibliographicCitation ^ot:comment ^prism:creationDate ^prism:endingPage ^prism:modificationDate ^prism:pageRange ^prism:publicationDate ^prism:publicationName ^prism:section ^prism:startingPage ^prism:volume ^skos:changeNote ^skos:historyNote ^tb:identifier.study ^tb:title.study @label ^skos:historyNote ^skos:prefLabel ^skos:prefLabel @label Tl2774246 Tl2774312 Tl2774272 Tl2774294 Tl2774280 Tl2774301 Tl2774284 Tl2774316 Tl2774295 Tl2774317 ^skos:historyNote @label @label ^ot:branchLengthTimeUnit ^ot:nodeLabelMode ^ot:nodeLabelTimeUnit ^ot:reasonsToExcludeFromSynthesis ^tb:kind.tree ^tb:ntax.tree ^tb:quality.tree ^tb:type.tree sbyrum 699706 Holothuroidea ot_1336 Miller A.K., Kerr A.M., Paulay G., Reich M., Wilson N.G., Carvajal J.I., & Rouse G.W. 2017. Molecular phylogeny of extant Holothuroidea (Echinodermata). Molecular Phylogenetics and Evolution, 111: 110-131. 2017 2017-04-12 131 2017-04-20 110-131 2017 Molecular Phylogenetics and Evolution Study 110 111 Generated on Sun Jun 03 21:04:59 UTC 2018 Mapped from TreeBASE schema using org.cipres.treebase.domain.nexus.nexml.NexmlDocumentWriter@49711249 $Rev$ 20885 Molecular phylogeny of extant Holothuroidea (Echinodermata) Mapped from TreeBASE schema using org.cipres.treebase.domain.nexus.nexml.NexmlOTUWriter@446d68d3 $Rev$ Isostichopus badionotus 269096 Isostichopus badionotus Paracucumis turricata 363698 Paracucumis turricata Labidodemas cf. pertinax 643552 Labidodemas Massinium magnum 4147815 Massinium magnum Colochirus robustus 3653097 Colochirus robustus Rhipidothuria racovitzai 3652355 Rhipidothuria racovitzai Paracaudina chilensis 896295 Paracaudina chilensis Placothuria squamata 3653147 Placothuria squamata Zygothuria oxysclera 3652077 Zygothuria oxysclera Benthogone abstrusa 3652414 Benthogone abstrusa Pearsonothuria graeffei 18329 Pearsonothuria graeffei Pseudostichopus sp. 2 1011874 Pseudostichopus Molpadia arenicola 398503 Caudina arenicola Caudina arenicola Psycheotrephes exigua 3652449 Psycheotrephes exigua Echinocucumis hispida 3653533 Echinocucumis hispida Echinocucumis cf. hispida 3653374 Echinocucumis Enypniastes eximia 3652463 Enypniastes eximia Psolidium whittakeri 3652807 Psolidium whittakeri Cucumaria miniata 891879 Cucumaria miniata Afrocucumis africana 482198 Afrocucumis africana Orphnurgus glaber 3652450 Orphnurgus glaber Stichopus chloronotus 18332 Stichopus chloronotus Paradota sp. 1 3653497 Paradota Thyonella gemmata 482186 Thyonella gemmata Euapta tahitiensis 3651835 Euapta tahitiensis Oneirophanta setigera 3652469 Oneirophanta setigera Lissothuria nutriens 3653237 Lissothuria nutriens Protelpidia murrayi 1083783 Protelpidia murrayi Euthyonidiella huwi 5708258 Euthyonidiella huwi Thelenota anax 217383 Thelenota anax Mesothuria oktaknemus 3651987 Mesothuria oktaknemus Abyssocucumis abyssorum 3652954 Abyssocucumis abyssorum Paroriza prouhoi 3652014 Paroriza prouhoi Apostichopus californicus 924454 Parastichopus californicus Ypsilothuria cf. bitentaculata 3653103 Ypsilothuria Pentactella leonina 5493725 Pseudocnus dubiosus leoninus Bohadschia koellikeri 3652267 Bohadschia koellikeri Chiridota albatrossii Complex_1 3651882 Chiridota albatrossii Holothuria hilla 698365 Holothuria hilla Gephyrothuria alcocki 3651642 Gephyrothuria alcocki Psolidium dorsipes 3652826 Psolidium dorsipes Pentactella sp. 4147825 Laevocnus Pannychia moseleyi 671182 Pannychia moseleyi Actinopyga varians 3652263 Actinopyga varians Peniagone diaphana 3652330 Peniagone diaphana Crucella scotiae 1 939093 Crucella scotiae Aslia pygmaea 3652978 Aslia pygmaea Chiridota laevis 478657 Chiridota laevis Molpadiodemas involutus 1083752 Molpadiodemas involutus Bathyplotes sp. 2 569670 Bathyplotes Myriotrochus antarcticus 3653562 Myriotrochus antarcticus Strongylocentrotus purpuratus 564702 Strongylocentrotus purpuratus Synallactes sp. 3651997 Synallactes Myriotrochus sp. 3653388 Myriotrochus Pachythyone rubra 3652518 Pachythyone rubra Phyrella mookei 5263372 Phyrella mookiei Thyone sp. 3652599 Thyone Peniagone sp. 363697 Peniagone Leptosynapta clarki 353768 Leptosynapta clarki Chiridota albatrossii Complex_2 3651882 Chiridota albatrossii Paelopatides sp. 1 3652009 Paelopatides Sigmodota contorta 3653557 Sigmodota contorta Pannychia cf. moseleyi 96909 Pannychia Deima validum 3652477 Deima validum Acaudina molpadioides 389136 Acaudina molpadioides Holothuria leucospilota 400706 Holothuria leucospilota Crucella scotiae 2 939093 Crucella scotiae Chiridota rigida 3651891 Chiridota rigida Apostichopus parvimensis 3652088 Apostichopus parvimensis Molpadiodemas villosus 958063 Pseudostichopus villosus Heteromolpadia tridens 3651628 Heteromolpadia tridens Heterothyone alba 3653068 Heterothyone alba Amperima robusta 3652381 Amperima robusta Stichopus vastus 205928 Stichopus vastus Psychropotes longicauda 319427 Psychropotes longicauda Sclerodactyla briareus 125645 Sclerodactyla briareus Parastichopus tremulus 3652110 Parastichopus tremulus Pseudostichopus sp. 1 1011874 Pseudostichopus Astichopus multifidus 741709 Astichopus multifidus Pentamera calcigera 780438 Pentamera calcigera Patiria miniata 174354 Patiria miniata Bathyplotes sp. 1 569670 Bathyplotes Paelopatides sp. 2 3652009 Paelopatides Molpadia musculus complex 787219 Molpadia musculus Paradota sp. E5604 3653497 Paradota Crucella scotiae 2 VMA05 939093 Crucella scotiae Pearsonothuria graeffei RA011 18329 Pearsonothuria graeffei Psolidium whittakeri E5136 3652807 Psolidium whittakeri Zygothuria oxysclera BFGU0226 3652077 Zygothuria oxysclera Heteromolpadia tridens MOLAF0228 3651628 Heteromolpadia tridens Leptosynapta clarki MBLsup 353768 Leptosynapta clarki Phyrella mookei UF10336 5263372 Phyrella mookiei Myriotrochus antarcticus MOLAF0805 3653562 Myriotrochus antarcticus Pentactella leonina S20193 5493725 Pseudocnus dubiosus leoninus Thyonella gemmata GulfSp 482186 Thyonella gemmata Molpadia arenicola SIO1 398503 Caudina arenicola Caudina arenicola Psolidium dorsipes S20868 3652826 Psolidium dorsipes Labidodemas cf pertinax NOAA1407 643552 Labidodemas Stichopus vastus CHK135 205928 Stichopus vastus Paracucumis turricata VMA06 363698 Paracucumis turricata Psychropotes longicauda E4074 319427 Psychropotes longicauda Bohadschia koellikeri RA661 3652267 Bohadschia koellikeri Euthyonidiella huwi S20863 5708258 Euthyonidiella huwi Pannychia cf. moseleyi E5614 96909 Pannychia Synallactes sp. E5607 3651997 Synallactes Bathyplotes sp. 2 S20496 569670 Bathyplotes Gephyrothuria alcocki MOLN032 3651642 Gephyrothuria alcocki Acaudina molpadioides MOLAF0220 389136 Acaudina molpadioides Amperima robusta MOLN116 3652381 Amperima robusta Oneirophanta setigera UF9706 3652469 Oneirophanta setigera Paelopatides sp. 2 E5609 3652009 Paelopatides Lissothuria nutriens E6675 3653237 Lissothuria nutriens Molpadiodemas involutus NIWA49857 1083752 Molpadiodemas involutus Echinocucumis hispida MOLN168 3653533 Echinocucumis hispida Holothuria hilla GU047 698365 Holothuria hilla Pannychia moseleyi E4625 671182 Pannychia moseleyi Paroriza prouhoi AMK8 3652014 Paroriza prouhoi Pentactella sp. S20682 4147825 Laevocnus Placothuria squamata NW1 3653147 Placothuria squamata Thyone sp. PNG121030 3652599 Thyone Sigmodota contorta E5135 3653557 Sigmodota contorta Apostichopus parvimensis SIO2 3652088 Apostichopus parvimensis Psycheotrephes exigua MOLN104 3652449 Psycheotrephes exigua Pachythyone rubra E6676 3652518 Pachythyone rubra Benthogone abstrusa MOLAF0378 3652414 Benthogone abstrusa Echinocucumis cf. hispida S20758 3653374 Echinocucumis Isostichopus badionotus UF4703 269096 Isostichopus badionotus Abyssocucumis abyssorum E5610 3652954 Abyssocucumis abyssorum Thelenota anax CHK131 217383 Thelenota anax Ypsilothuria cf. bitentaculata E4760 3653103 Ypsilothuria Pentamera calcigera E5613 780438 Pentamera calcigera Paelopatides sp. 1 E4365 3652009 Paelopatides Rhipidothuria racovitzai MOLP166 3652355 Rhipidothuria racovitzai Myriotrochus sp. MOLN139 3653388 Myriotrochus Sclerodactyla briareus GulfSp 125645 Sclerodactyla briareus Paracaudina chilensis BCOW1 896295 Paracaudina chilensis Euapta tahitiensis CHK067 3651835 Euapta tahitiensis Astichopus multifidus UF3985 741709 Astichopus multifidus Pseudostichopus sp. 2 S21020 1011874 Pseudostichopus Peniagone sp. E5608 363697 Peniagone Orphnurgus glaber MOLAF0372 3652450 Orphnurgus glaber Chiridota albatrossii Complex_2_E5612 3651882 Chiridota albatrossii Deima validum AMK9 3652477 Deima validum Enypniastes eximia NW3 3652463 Enypniastes eximia Protelpidia cf murrayi E5110 1083785 Protelpidia Chiridota albatrossii Complex_1_E5611 3651882 Chiridota albatrossii Mesothuria oktaknemus UF9746 3651987 Mesothuria oktaknemus Afrocucumis africana GU038 482198 Afrocucumis africana Apostichopus californicus GB 924454 Parastichopus californicus Massinium magnum PNG120875 4147815 Massinium magnum Stichopus chloronotus GU1401 18332 Stichopus chloronotus Chiridota laevis E5602 478657 Chiridota laevis Crucella scotiae 1 E5296 939093 Crucella scotiae Heterothyone alba NW5 3653068 Heterothyone alba Pseudostichopus sp. 1 S21014 1011874 Pseudostichopus Parastichopus tremulus UF4863 3652110 Parastichopus tremulus Peniagone diaphana AMK3 3652330 Peniagone diaphana Bathyplotes sp. 1 E5111 569670 Bathyplotes Mapped from TreeBASE schema using org.cipres.treebase.domain.nexus.nexml.NexmlTreeBlockWriter@295ce869 $Rev$ ot:bootstrapValues Maximum likelihood Tn16287621 Tn16287589 false Species Tree 84 Unrated Single true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true