{"sha": "19ec8a2da4b35c55075f155f9fb4d01281774fe5", "data": {"nexml": {"@about": "#study", "@generator": "Open Tree API", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xhtml": "http://www.w3.org/1999/xhtml/vocab#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "Open Tree NexSON validation", "@id": "peyotl-validator", "@name": "api.opentreeoflife.org/validate", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": [], "otherProperty": [{"name": "pythonVersion", "value": "2.7.3"}, {"name": "pythonImplementation", "value": "CPython"}]}}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0"}]}, "^ot:annotationEvents": {"annotation": [{"@dateCreated": "2014-08-06T15:45:24.244Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"autoAcceptExactMatches": false, "searchContext": {"$": "Birds"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}]}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2014-08-06T15:45:24.244Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": [{"@filename": "<content provided as a string in a \"content\" rather than a file upload>", "@size": 1513, "@type": "newick", "@url": "/curator/default/to_nexson?output=input&uploadid=u230492f0-aad2-48f9-aadd-26b69e1094b1", "description": {"$": "Source data for tree 'tree3'"}, "sourceForTree": [{"$": "tree3"}]}]}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2022-04-20T17:36:15.775Z", "@description": "Describes external namesets merged into this study", "@id": "merged-namesets-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "MERGED_NAMESET_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"namesets": {"nameset": []}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node101", "@treesID": "trees1", "@treeID": "tree3", "@nodeID": "node101"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node102", "@treesID": "trees1", "@treeID": "tree3", "@nodeID": "node102"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node27", "@treesID": "trees1", "@treeID": "tree3", "@nodeID": "node27"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node28", "@treesID": "trees1", "@treeID": "tree3", "@nodeID": "node28"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node29", "@treesID": "trees1", "@treeID": "tree3", "@nodeID": "node29"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node41", "@treesID": "trees1", "@treeID": "tree3", "@nodeID": "node41"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node42", "@treesID": "trees1", "@treeID": "tree3", "@nodeID": "node42"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node45", "@treesID": "trees1", "@treeID": "tree3", "@nodeID": "node45"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node46", "@treesID": "trees1", "@treeID": "tree3", "@nodeID": "node46"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node52", "@treesID": "trees1", "@treeID": "tree3", "@nodeID": "node52"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node53", "@treesID": "trees1", "@treeID": "tree3", "@nodeID": "node53"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node54", "@treesID": "trees1", "@treeID": "tree3", "@nodeID": "node54"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node56", "@treesID": "trees1", "@treeID": "tree3", "@nodeID": "node56"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node57", "@treesID": "trees1", "@treeID": "tree3", "@nodeID": "node57"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node6", "@treesID": "trees1", "@treeID": "tree3", "@nodeID": "node6"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node7", "@treesID": "trees1", "@treeID": "tree3", "@nodeID": "node7"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node85", "@treesID": "trees1", "@treeID": "tree3", "@nodeID": "node85"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node86", "@treesID": "trees1", "@treeID": "tree3", "@nodeID": "node86"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu10", "otu6", "otu7", "otu8", "otu9"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu13", "otu14"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu20", "otu21"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu23", "otu24"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu25", "otu26", "otu27"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu28", "otu29"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu3", "otu4"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu31", "otu32", "otu34"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu37", "otu38"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu41", "otu42"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu45", "otu46", "otu47"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu51", "otu52"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["highestMintedElementIDs"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:branchLengthTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree3", "@treesID": "trees1", "@treeID": "tree3"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit", "^ot:reasonsToExcludeFromSynthesis"], "refersTo": {"@top": "trees", "@idref": "tree3", "@treesID": "trees1", "@treeID": "tree3"}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": ["tree3"], "^ot:comment": "Many subspecies missing from taxonomy. If taxonomy if updated, this study will need to be remapped (i.e. so taxa are not mapped to species and descendant subspecies). For now, type subspecies are mapped to species, other left unmapped. (JWB)", "^ot:curatorName": ["Joseph W. Brown", "Emily Jane McTavish", "eliotmiller"], "^ot:dataDeposit": {"@href": ""}, "^ot:focalClade": 291635, "^ot:focalCladeOTTTaxonName": "Megalaimidae", "^ot:otusElementOrder": ["otus1"], "^ot:studyId": "ot_150", "^ot:studyPublication": {"@href": "http://dx.doi.org/10.1016/j.ympev.2013.03.004"}, "^ot:studyPublicationReference": "den Tex, Robert-Jan, Jennifer A. Leonard. 2013. A molecular phylogeny of Asian barbets: speciation and extinction in the tropics. Molecular Phylogenetics and Evolution 68 (1): 1-13.", "^ot:studyYear": 2013, "^ot:tag": [], "^ot:treesElementOrder": ["trees1"], "highestMintedElementIDs": {"agent": 0, "annotation": 0, "edge": 102, "message": 0, "node": 103, "otu": 53, "otus": 1, "tree": 3, "trees": 1}, "otusById": {"otus1": {"otuById": {"otu10": {"^ot:originalLabel": "Megalaima haemacephala indica", "^ot:ottId": 738739, "^ot:ottTaxonName": "Megalaima haemacephala"}, "otu11": {"^ot:originalLabel": "Megalaima rubricapillus", "^ot:ottId": 6154912, "^ot:ottTaxonName": "Psilopogon rubricapillus"}, "otu12": {"^ot:originalLabel": "Megalaima malabarica", "^ot:ottId": 6154906, "^ot:ottTaxonName": "Psilopogon malabaricus"}, "otu13": {"^ot:originalLabel": "Megalaima australis duvaucelli Sumatra", "^ot:ottId": 6154894, "^ot:ottTaxonName": "Psilopogon duvaucelii"}, "otu14": {"^ot:originalLabel": "Megalaima australis duvaucelli Borneo", "^ot:ottId": 6154894, "^ot:ottTaxonName": "Psilopogon duvaucelii"}, "otu15": {"^ot:originalLabel": "Megalaima australis australis", "^ot:ottId": 6154889, "^ot:ottTaxonName": "Psilopogon australis"}, "otu16": {"^ot:originalLabel": "Megalaima eximia", "^ot:ottId": 6154895, "^ot:ottTaxonName": "Psilopogon eximius"}, "otu17": {"^ot:originalLabel": "Megalaima virens", "^ot:ottId": 6154913, "^ot:ottTaxonName": "Psilopogon virens"}, "otu18": {"^ot:originalLabel": "Megalaima lagrandieri", "^ot:ottId": 6154904, "^ot:ottTaxonName": "Psilopogon lagrandieri"}, "otu19": {"^ot:originalLabel": "Psilopogon pyrolophus", "^ot:ottId": 291641, "^ot:ottTaxonName": "Psilopogon pyrolophus"}, "otu20": {"^ot:originalLabel": "Megalaima mystacophanos Borneo", "^ot:ottId": 6154908, "^ot:ottTaxonName": "Psilopogon mystacophanos"}, "otu21": {"^ot:originalLabel": "Megalaima mystacophanos Sumatra", "^ot:ottId": 6154908, "^ot:ottTaxonName": "Psilopogon mystacophanos"}, "otu22": {"^ot:originalLabel": "Megalaima javensis", "^ot:ottId": 6154903, "^ot:ottTaxonName": "Psilopogon javensis"}, "otu23": {"^ot:originalLabel": "Megalaima rafflesii Belitung", "^ot:ottId": 6154911, "^ot:ottTaxonName": "Psilopogon rafflesii"}, "otu24": {"^ot:originalLabel": "Megalaima rafflesii Sumatra", "^ot:ottId": 6154911, "^ot:ottTaxonName": "Psilopogon rafflesii"}, "otu25": {"^ot:originalLabel": "Megalaima armillaris baliensis Bali", "^ot:ottId": 6154887, "^ot:ottTaxonName": "Psilopogon armillaris"}, "otu26": {"^ot:originalLabel": "Megalaima armillaris armillaris East Java", "^ot:ottId": 6154887, "^ot:ottTaxonName": "Psilopogon armillaris"}, "otu27": {"^ot:originalLabel": "Megalaima armillaris armillaris West Java", "^ot:ottId": 6154887, "^ot:ottTaxonName": "Psilopogon armillaris"}, "otu28": {"^ot:originalLabel": "Megalaima henricii brachyrhyncha", "^ot:ottId": 6154901, "^ot:ottTaxonName": "Psilopogon henricii"}, "otu29": {"^ot:originalLabel": "Megalaima henricii henricii", "^ot:ottId": 6154901, "^ot:ottTaxonName": "Psilopogon henricii"}, "otu3": {"^ot:originalLabel": "Calorhamphus fuliginosus fuliginosus", "^ot:ottId": 738747, "^ot:ottTaxonName": "Calorhamphus fuliginosus"}, "otu30": {"^ot:originalLabel": "Megalaima pulcherrima", "^ot:ottId": 6154910, "^ot:ottTaxonName": "Psilopogon pulcherrimus"}, "otu31": {"^ot:originalLabel": "Megalaima asiatica davisoni 1", "^ot:ottId": 6154888, "^ot:ottTaxonName": "Psilopogon asiaticus"}, "otu32": {"^ot:originalLabel": "Megalaima asiatica asiatica", "^ot:ottId": 6154888, "^ot:ottTaxonName": "Psilopogon asiaticus"}, "otu33": {"^ot:originalLabel": "Megalaima annamensis", "^ot:ottId": 6154886, "^ot:ottTaxonName": "Psilopogon annamensis"}, "otu34": {"^ot:originalLabel": "Megalaima asiatica davisoni 2", "^ot:ottId": 6154888, "^ot:ottTaxonName": "Psilopogon asiaticus"}, "otu35": {"^ot:originalLabel": "Megalaima asiatica chersonesus", "^ot:ottId": 6154890, "^ot:ottTaxonName": "Psilopogon chersonesus"}, "otu36": {"^ot:originalLabel": "Megalaima oorti", "^ot:ottId": 738735, "^ot:ottTaxonName": "Megalaima oorti"}, "otu37": {"^ot:originalLabel": "Megalaima faber sini", "^ot:ottId": 6154896, "^ot:ottTaxonName": "Psilopogon faber"}, "otu38": {"^ot:originalLabel": "Megalaima faber faber", "^ot:ottId": 6154896, "^ot:ottTaxonName": "Psilopogon faber"}, "otu39": {"^ot:originalLabel": "Megalaima nuchalis", "^ot:ottId": 960891, "^ot:ottTaxonName": "Psilopogon nuchalis"}, "otu4": {"^ot:originalLabel": "Calorhamphus fuliginosus tertius", "^ot:ottId": 738747, "^ot:ottTaxonName": "Calorhamphus fuliginosus"}, "otu40": {"^ot:originalLabel": "Megalaima incognita", "^ot:ottId": 6154902, "^ot:ottTaxonName": "Psilopogon incognitus"}, "otu41": {"^ot:originalLabel": "Megalaima chrysopogon chrysopogon", "^ot:ottId": 6154891, "^ot:ottTaxonName": "Psilopogon chrysopogon"}, "otu42": {"^ot:originalLabel": "Megalaima chrysopogon chrysopsis", "^ot:ottId": 6154891, "^ot:ottTaxonName": "Psilopogon chrysopogon"}, "otu43": {"^ot:originalLabel": "Megalaima corvina", "^ot:ottId": 6154893, "^ot:ottTaxonName": "Psilopogon corvinus"}, "otu44": {"^ot:originalLabel": "Megalaima monticola", "^ot:ottId": 6154907, "^ot:ottTaxonName": "Psilopogon monticola"}, "otu45": {"^ot:originalLabel": "Megalaima franklinii franklinii", "^ot:ottId": 6154899, "^ot:ottTaxonName": "Psilopogon franklinii"}, "otu46": {"^ot:originalLabel": "Megalaima franklinii ramsayi", "^ot:ottId": 6154899, "^ot:ottTaxonName": "Psilopogon franklinii"}, "otu47": {"^ot:originalLabel": "Megalaima franklinii auricularis", "^ot:ottId": 6154899, "^ot:ottTaxonName": "Psilopogon franklinii"}, "otu48": {"^ot:originalLabel": "Megalaima viridis", "^ot:ottId": 6154914, "^ot:ottTaxonName": "Psilopogon viridis"}, "otu49": {"^ot:originalLabel": "Megalaima flavifrons", "^ot:ottId": 6154898, "^ot:ottTaxonName": "Psilopogon flavifrons"}, "otu5": {"^ot:originalLabel": "Calorhamphus fuliginosus hayii", "^ot:ottId": 7662947, "^ot:ottTaxonName": "Caloramphus hayii"}, "otu50": {"^ot:originalLabel": "Megalaima zeylanica zeylanica", "^ot:ottId": 6154915, "^ot:ottTaxonName": "Psilopogon zeylanicus"}, "otu51": {"^ot:originalLabel": "Megalaima lineata hodgsoni", "^ot:ottId": 6154905, "^ot:ottTaxonName": "Psilopogon lineatus"}, "otu52": {"^ot:originalLabel": "Megalaima lineata lineata", "^ot:ottId": 6154905, "^ot:ottTaxonName": "Psilopogon lineatus"}, "otu53": {"^ot:originalLabel": "Megalaima faiostricta", "^ot:ottId": 6154897, "^ot:ottTaxonName": "Psilopogon faiostrictus"}, "otu6": {"^ot:originalLabel": "Megalaima haemacephala intermedia", "^ot:ottId": 738739, "^ot:ottTaxonName": "Megalaima haemacephala"}, "otu7": {"^ot:originalLabel": "Megalaima haemacephala celestinoi", "^ot:ottId": 738739, "^ot:ottTaxonName": "Megalaima haemacephala"}, "otu8": {"^ot:originalLabel": "Megalaima haemacephala rosea", "^ot:ottId": 738739, "^ot:ottTaxonName": "Megalaima haemacephala"}, "otu9": {"^ot:originalLabel": "Megalaima haemacephala delica", "^ot:ottId": 738739, "^ot:ottTaxonName": "Megalaima haemacephala"}}}}, "treesById": {"trees1": {"@otus": "otus1", "^ot:treeElementOrder": ["tree3"], "treeById": {"tree3": {"@label": "Fig. 5", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:undefined", "^ot:curatedType": "", "^ot:inGroupClade": "node3", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:reasonsToExcludeFromSynthesis": [], "^ot:rootNodeId": "node3", "^ot:specifiedRoot": "node3", "^ot:tag": [], "^ot:unrootedTree": false, "edgeBySourceId": {"node10": {"edge10": {"@source": "node10", "@target": "node11"}, "edge19": {"@source": "node10", "@target": "node20"}}, "node100": {"edge100": {"@source": "node100", "@target": "node101"}, "edge101": {"@source": "node100", "@target": "node102"}}, "node11": {"edge11": {"@source": "node11", "@target": "node12"}, "edge18": {"@source": "node11", "@target": "node19"}}, "node12": {"edge12": {"@source": "node12", "@target": "node13"}, "edge15": {"@source": "node12", "@target": "node16"}}, "node13": {"edge13": {"@source": "node13", "@target": "node14"}, "edge14": {"@source": "node13", "@target": "node15"}}, "node16": {"edge16": {"@source": "node16", "@target": "node17"}, "edge17": {"@source": "node16", "@target": "node18"}}, "node20": {"edge20": {"@source": "node20", "@target": "node21"}, "edge21": {"@source": "node20", "@target": "node22"}}, "node23": {"edge23": {"@source": "node23", "@target": "node24"}, "edge30": {"@source": "node23", "@target": "node31"}}, "node24": {"edge24": {"@source": "node24", "@target": "node25"}, "edge29": {"@source": "node24", "@target": "node30"}}, "node25": {"edge25": {"@source": "node25", "@target": "node26"}, "edge28": {"@source": "node25", "@target": "node29"}}, "node26": {"edge26": {"@source": "node26", "@target": "node27"}, "edge27": {"@source": "node26", "@target": "node28"}}, "node3": {"edge3": {"@source": "node3", "@target": "node4"}, "edge8": {"@source": "node3", "@target": "node9"}}, "node31": {"edge31": {"@source": "node31", "@target": "node32"}, "edge36": {"@source": "node31", "@target": "node37"}}, "node32": {"edge32": {"@source": "node32", "@target": "node33"}, "edge35": {"@source": "node32", "@target": "node36"}}, "node33": {"edge33": {"@source": "node33", "@target": "node34"}, "edge34": {"@source": "node33", "@target": "node35"}}, "node37": {"edge37": {"@source": "node37", "@target": "node38"}, "edge46": {"@source": "node37", "@target": "node47"}}, "node38": {"edge38": {"@source": "node38", "@target": "node39"}, "edge43": {"@source": "node38", "@target": "node44"}}, "node39": {"edge39": {"@source": "node39", "@target": "node40"}, "edge42": {"@source": "node39", "@target": "node43"}}, "node4": {"edge4": {"@source": "node4", "@target": "node5"}, "edge7": {"@source": "node4", "@target": "node8"}}, "node40": {"edge40": {"@source": "node40", "@target": "node41"}, "edge41": {"@source": "node40", "@target": "node42"}}, "node44": {"edge44": {"@source": "node44", "@target": "node45"}, "edge45": {"@source": "node44", "@target": "node46"}}, "node47": {"edge47": {"@source": "node47", "@target": "node48"}, "edge58": {"@source": "node47", "@target": "node59"}}, "node48": {"edge48": {"@source": "node48", "@target": "node49"}, "edge57": {"@source": "node48", "@target": "node58"}}, "node49": {"edge49": {"@source": "node49", "@target": "node50"}, "edge54": {"@source": "node49", "@target": "node55"}}, "node5": {"edge5": {"@source": "node5", "@target": "node6"}, "edge6": {"@source": "node5", "@target": "node7"}}, "node50": {"edge50": {"@source": "node50", "@target": "node51"}, "edge53": {"@source": "node50", "@target": "node54"}}, "node51": {"edge51": {"@source": "node51", "@target": "node52"}, "edge52": {"@source": "node51", "@target": "node53"}}, "node55": {"edge55": {"@source": "node55", "@target": "node56"}, "edge56": {"@source": "node55", "@target": "node57"}}, "node59": {"edge102": {"@source": "node59", "@target": "node103"}, "edge59": {"@source": "node59", "@target": "node60"}}, "node60": {"edge60": {"@source": "node60", "@target": "node61"}, "edge93": {"@source": "node60", "@target": "node94"}}, "node61": {"edge61": {"@source": "node61", "@target": "node62"}, "edge88": {"@source": "node61", "@target": "node89"}}, "node62": {"edge62": {"@source": "node62", "@target": "node63"}, "edge81": {"@source": "node62", "@target": "node82"}}, "node63": {"edge63": {"@source": "node63", "@target": "node64"}, "edge74": {"@source": "node63", "@target": "node75"}}, "node64": {"edge64": {"@source": "node64", "@target": "node65"}, "edge71": {"@source": "node64", "@target": "node72"}}, "node65": {"edge65": {"@source": "node65", "@target": "node66"}, "edge70": {"@source": "node65", "@target": "node71"}}, "node66": {"edge66": {"@source": "node66", "@target": "node67"}, "edge69": {"@source": "node66", "@target": "node70"}}, "node67": {"edge67": {"@source": "node67", "@target": "node68"}, "edge68": {"@source": "node67", "@target": "node69"}}, "node72": {"edge72": {"@source": "node72", "@target": "node73"}, "edge73": {"@source": "node72", "@target": "node74"}}, "node75": {"edge75": {"@source": "node75", "@target": "node76"}, "edge80": {"@source": "node75", "@target": "node81"}}, "node76": {"edge76": {"@source": "node76", "@target": "node77"}, "edge79": {"@source": "node76", "@target": "node80"}}, "node77": {"edge77": {"@source": "node77", "@target": "node78"}, "edge78": {"@source": "node77", "@target": "node79"}}, "node82": {"edge82": {"@source": "node82", "@target": "node83"}, "edge87": {"@source": "node82", "@target": "node88"}}, "node83": {"edge83": {"@source": "node83", "@target": "node84"}, "edge86": {"@source": "node83", "@target": "node87"}}, "node84": {"edge84": {"@source": "node84", "@target": "node85"}, "edge85": {"@source": "node84", "@target": "node86"}}, "node89": {"edge89": {"@source": "node89", "@target": "node90"}, "edge92": {"@source": "node89", "@target": "node93"}}, "node9": {"edge22": {"@source": "node9", "@target": "node23"}, "edge9": {"@source": "node9", "@target": "node10"}}, "node90": {"edge90": {"@source": "node90", "@target": "node91"}, "edge91": {"@source": "node90", "@target": "node92"}}, "node94": {"edge94": {"@source": "node94", "@target": "node95"}, "edge99": {"@source": "node94", "@target": "node100"}}, "node95": {"edge95": {"@source": "node95", "@target": "node96"}, "edge98": {"@source": "node95", "@target": "node99"}}, "node96": {"edge96": {"@source": "node96", "@target": "node97"}, "edge97": {"@source": "node96", "@target": "node98"}}}, "nodeById": {"node10": {}, "node100": {}, "node101": {"@otu": "otu51", "^ot:isTaxonExemplar": true}, "node102": {"@otu": "otu52", "^ot:isTaxonExemplar": false}, "node103": {"@otu": "otu53"}, "node11": {}, "node12": {}, "node13": {}, "node14": {"@otu": "otu6"}, "node15": {"@otu": "otu7"}, "node16": {}, "node17": {"@otu": "otu8"}, "node18": {"@otu": "otu9"}, "node19": {"@otu": "otu10"}, "node20": {}, "node21": {"@otu": "otu11"}, "node22": {"@otu": "otu12"}, "node23": {}, "node24": {}, "node25": {}, "node26": {}, "node27": {"@otu": "otu13", "^ot:isTaxonExemplar": true}, "node28": {"@otu": "otu14", "^ot:isTaxonExemplar": false}, "node29": {"@otu": "otu15", "^ot:isTaxonExemplar": false}, "node3": {"@root": true}, "node30": {"@otu": "otu16"}, "node31": {}, "node32": {}, "node33": {}, "node34": {"@otu": "otu17"}, "node35": {"@otu": "otu18"}, "node36": {"@otu": "otu19"}, "node37": {}, "node38": {}, "node39": {}, "node4": {}, "node40": {}, "node41": {"@otu": "otu20", "^ot:isTaxonExemplar": true}, "node42": {"@otu": "otu21", "^ot:isTaxonExemplar": false}, "node43": {"@otu": "otu22"}, "node44": {}, "node45": {"@otu": "otu23", "^ot:isTaxonExemplar": true}, "node46": {"@otu": "otu24", "^ot:isTaxonExemplar": false}, "node47": {}, "node48": {}, "node49": {}, "node5": {}, "node50": {}, "node51": {}, "node52": {"@otu": "otu25", "^ot:isTaxonExemplar": true}, "node53": {"@otu": "otu26", "^ot:isTaxonExemplar": false}, "node54": {"@otu": "otu27", "^ot:isTaxonExemplar": false}, "node55": {}, "node56": {"@otu": "otu28", "^ot:isTaxonExemplar": true}, "node57": {"@otu": "otu29", "^ot:isTaxonExemplar": false}, "node58": {"@otu": "otu30"}, "node59": {}, "node6": {"@otu": "otu3", "^ot:isTaxonExemplar": true}, "node60": {}, "node61": {}, "node62": {}, "node63": {}, "node64": {}, "node65": {}, "node66": {}, "node67": {}, "node68": {"@otu": "otu31"}, "node69": {"@otu": "otu32"}, "node7": {"@otu": "otu4", "^ot:isTaxonExemplar": false}, "node70": {"@otu": "otu33"}, "node71": {"@otu": "otu34"}, "node72": {}, "node73": {"@otu": "otu35"}, "node74": {"@otu": "otu36"}, "node75": {}, "node76": {}, "node77": {}, "node78": {"@otu": "otu37"}, "node79": {"@otu": "otu38"}, "node8": {"@otu": "otu5"}, "node80": {"@otu": "otu39"}, "node81": {"@otu": "otu40"}, "node82": {}, "node83": {}, "node84": {}, "node85": {"@otu": "otu41", "^ot:isTaxonExemplar": true}, "node86": {"@otu": "otu42", "^ot:isTaxonExemplar": false}, "node87": {"@otu": "otu43"}, "node88": {"@otu": "otu44"}, "node89": {}, "node9": {}, "node90": {}, "node91": {"@otu": "otu45"}, "node92": {"@otu": "otu46"}, "node93": {"@otu": "otu47"}, "node94": {}, "node95": {}, "node96": {}, "node97": {"@otu": "otu48"}, "node98": {"@otu": "otu49"}, "node99": {"@otu": "otu50"}}}}}}}}, "branch2sha": {"master": "19ec8a2da4b35c55075f155f9fb4d01281774fe5"}, "commentHTML": "<p>Many subspecies missing from taxonomy. If taxonomy if updated, this study will need to be remapped (i.e. so taxa are not mapped to species and descendant subspecies). For now, type subspecies are mapped to species, other left unmapped. (JWB)</p>", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "62851512a62999aaf3a75dcf2524adc8c241d7e0", "author_name": "eliotmiller", "author_email": "ANONYMOUS", "date": "Sun, 17 Dec 2023 13:29:29 +0000", "date_ISO_8601": "2023-12-17 13:29:29 +0000", "relative_date": "2 years, 5 months ago", "message_subject": "Trying to fix some issues, still incomplete", "message_body": "(Update document 'ot_150' via OpenTree API)"}, {"id": "8fdc9b7b2f5e5ea9ab15cae433bb73c7a23496ad", "author_name": "Emily Jane McTavish", "author_email": "ejmctavish@ucmerced.edu", "date": "Thu, 30 Mar 2023 21:17:54 +0000", "date_ISO_8601": "2023-03-30 21:17:54 +0000", "relative_date": "3 years, 1 month ago", "message_subject": "Update mappings to match eBird", "message_body": "(Update document 'ot_150' via OpenTree API)"}, {"id": "dac54d840d7dcab888beccab85af7627d4751e9c", "author_name": "eliotmiller", "author_email": "ANONYMOUS", "date": "Tue, 13 Dec 2022 21:39:34 +0000", "date_ISO_8601": "2022-12-13 21:39:34 +0000", "relative_date": "3 years, 5 months ago", "message_subject": "Update document 'ot_150' via OpenTree API"}, {"id": "99d6ac6ab0c46308c0b4249a9a5ab086c7cf0cf3", "author_name": "Emily Jane McTavish", "author_email": "ejmctavish@ucmerced.edu", "date": "Wed, 20 Apr 2022 17:52:23 +0000", "date_ISO_8601": "2022-04-20 17:52:23 +0000", "relative_date": "4 years, 1 month ago", "message_subject": "update map", "message_body": "(Update document 'ot_150' via OpenTree API)"}, {"id": "20f9c603402786b79658d096c3387a8e0a82683e", "author_name": "Emily Jane McTavish", "author_email": "ejmctavish@ucmerced.edu", "date": "Wed, 20 Apr 2022 17:43:40 +0000", "date_ISO_8601": "2022-04-20 17:43:40 +0000", "relative_date": "4 years, 1 month ago", "message_subject": "Update document 'ot_150' via OpenTree API"}, {"id": "7b58f56bbd6c6f39f96296c050118d42f48d7a6f", "author_name": "Emily Jane McTavish", "author_email": "ejmctavish@ucmerced.edu", "date": "Thu, 25 Mar 2021 16:19:48 +0000", "date_ISO_8601": "2021-03-25 16:19:48 +0000", "relative_date": "5 years ago", "message_subject": "Was mapped to synonym that shouldn't be used \" Megalaima malabarica \"", "message_body": "(Update document 'ot_150' via OpenTree API)"}, {"id": "bde0b42a13bc877f62d64041b10ebfd3322e1566", "author_name": "Joseph W. Brown", "author_email": "ANONYMOUS", "date": "Wed, 6 Aug 2014 16:04:06 +0000", "date_ISO_8601": "2014-08-06 16:04:06 +0000", "relative_date": "12 years ago", "message_subject": "Megalaimidae", "message_body": "(Update Study #ot_150 via OpenTree API)"}, {"id": "be12c309a7246a3e91800f8705d174c58a84de25", "author_name": "Joseph W. Brown", "author_email": "ANONYMOUS", "date": "Wed, 6 Aug 2014 15:45:23 +0000", "date_ISO_8601": "2014-08-06 15:45:23 +0000", "relative_date": "12 years ago", "message_subject": "Update Study #ot_150 via OpenTree API"}]}