{"sha": "c33806c9ee11db205ee8c02a42e31b1c3128e299", "data": {"nexml": {"@about": "#study", "@generator": "Open Tree API", "@id": "study", "@nexml2json": "0.0.0", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xhtml": "http://www.w3.org/1999/xhtml/vocab#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "otus": {"@id": "otus1", "otu": [{"@id": "otu1", "@about": "#otu1", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Aca hel"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 589396}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Acanthiophilus helianthi"}]}, {"@id": "otu10", "@about": "#otu10", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "TbeaMa2"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 4402464}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Trupanea beardsleyi"}]}, {"@id": "otu11", "@about": "#otu11", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "TcasMa1"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 4402434}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Trupanea crassipes"}]}, {"@id": "otu12", "@about": "#otu12", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "TcasMa2"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 4402434}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Trupanea crassipes"}]}, {"@id": "otu13", "@about": "#otu13", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "TcraMa1"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 4402393}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Trupanea cratericola"}]}, {"@id": "otu14", "@about": "#otu14", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Tden1Ma"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 4402390}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Trupanea denotata"}]}, {"@id": "otu15", "@about": "#otu15", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Tden2Ma"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 4402390}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Trupanea denotata"}]}, {"@id": "otu16", "@about": "#otu16", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "TdubKa1"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 4402383}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Trupanea dubautiae"}]}, {"@id": "otu17", "@about": "#otu17", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "TdubMa1"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 4402383}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Trupanea dubautiae"}]}, {"@id": "otu18", "@about": "#otu18", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "TdubOa1"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 4402383}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Trupanea dubautiae"}]}, {"@id": "otu19", "@about": "#otu19", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Tep arn"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 589409}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Tephritis arnicae"}]}, {"@id": "otu2", "@about": "#otu2", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Bac ole"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 702964}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Bactrocera oleae"}]}, {"@id": "otu20", "@about": "#otu20", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "TjoiKa1"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 4402405}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Trupanea joycei"}]}, {"@id": "otu21", "@about": "#otu21", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "TjoyMa1"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 4402405}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Trupanea joycei"}]}, {"@id": "otu22", "@about": "#otu22", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "TjoyMo1"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 4402405}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Trupanea joycei"}]}, {"@id": "otu23", "@about": "#otu23", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "TpanHa1"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 4402356}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Trupanea pantosticta"}]}, {"@id": "otu24", "@about": "#otu24", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "TpanHa2"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 4402356}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Trupanea pantosticta"}]}, {"@id": "otu25", "@about": "#otu25", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "TperKa1"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 4402379}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Trupanea perkinsi"}]}, {"@id": "otu26", "@about": "#otu26", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:altLabel", "@datatype": "xsd:string", "$": "Trupanea pohakuloa"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "TpohHa1"}]}, {"@id": "otu27", "@about": "#otu27", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Tru amo"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 659950}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Trupanea amoena"}]}, {"@id": "otu28", "@about": "#otu28", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Tru ste"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 781866}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Trupanea stellata"}]}, {"@id": "otu29", "@about": "#otu29", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "TsweKa1"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 4402529}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Trupanea swezeyi"}]}, {"@id": "otu3", "@about": "#otu3", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Cap ram"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 589405}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Capitites ramulosa"}]}, {"@id": "otu30", "@about": "#otu30", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "TsweMa1"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 4402529}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Trupanea swezeyi"}]}, {"@id": "otu31", "@about": "#otu31", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:altLabel", "@datatype": "xsd:string", "$": "Trupanea waikamoi"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "TwaiMa1"}]}, {"@id": "otu4", "@about": "#otu4", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:altLabel", "@datatype": "xsd:string", "$": "Trupanea actinoba"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Tru act"}]}, {"@id": "otu5", "@about": "#otu5", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:altLabel", "@datatype": "xsd:string", "$": "Trupanea conjunta"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Tru con"}]}, {"@id": "otu6", "@about": "#otu6", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "PnewKa1"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 4405016}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Phaeogramma"}]}, {"@id": "otu7", "@about": "#otu7", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "PvitMo1"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 4405017}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Phaeogramma vittipennis"}]}, {"@id": "otu8", "@about": "#otu8", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "TarbHa1"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 4402516}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Trupanea arboreae"}]}, {"@id": "otu9", "@about": "#otu9", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "TartMa1"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 4402365}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Trupanea artemisiae"}]}], "@about": "#otus1"}, "trees": {"@otus": "otus1", "@id": "trees1", "tree": [{"@label": "Viale et al., 2015 Bayesian Concatenated", "@xsi:type": "nex:FloatTree", "node": [{"@root": true, "@id": "tree1_ROOT", "@about": "#tree1_ROOT"}, {"@otu": "otu2", "@id": "node4", "@about": "#node4", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node3", "@about": "#node3"}, {"@id": "node1", "@about": "#node1"}, {"@otu": "otu1", "@id": "node2", "@about": "#node2", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node8", "@about": "#node8"}, {"@otu": "otu5", "@id": "node53", "@about": "#node53", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node9", "@about": "#node9"}, {"@id": "node11", "@about": "#node11"}, {"@id": "node12", "@about": "#node12"}, {"@id": "node13", "@about": "#node13"}, {"@id": "node14", "@about": "#node14"}, {"@otu": "otu6", "@id": "node15", "@about": "#node15", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu7", "@id": "node16", "@about": "#node16", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node17", "@about": "#node17"}, {"@id": "node18", "@about": "#node18"}, {"@otu": "otu14", "@id": "node19", "@about": "#node19", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu15", "@id": "node20", "@about": "#node20", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu29", "@id": "node21", "@about": "#node21", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu30", "@id": "node22", "@about": "#node22", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node23", "@about": "#node23"}, {"@id": "node24", "@about": "#node24"}, {"@otu": "otu8", "@id": "node25", "@about": "#node25", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu13", "@id": "node26", "@about": "#node26", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu10", "@id": "node27", "@about": "#node27", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node28", "@about": "#node28"}, {"@otu": "otu9", "@id": "node29", "@about": "#node29", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node30", "@about": "#node30"}, {"@otu": "otu11", "@id": "node31", "@about": "#node31", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu12", "@id": "node32", "@about": "#node32", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu16", "@id": "node33", "@about": "#node33", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node34", "@about": "#node34"}, {"@otu": "otu17", "@id": "node35", "@about": "#node35", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu18", "@id": "node36", "@about": "#node36", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node37", "@about": "#node37"}, {"@id": "node38", "@about": "#node38"}, {"@id": "node39", "@about": "#node39"}, {"@id": "node40", "@about": "#node40"}, {"@otu": "otu20", "@id": "node41", "@about": "#node41", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu22", "@id": "node42", "@about": "#node42", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu31", "@id": "node43", "@about": "#node43", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu21", "@id": "node44", "@about": "#node44", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node45", "@about": "#node45"}, {"@otu": "otu23", "@id": "node46", "@about": "#node46", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu24", "@id": "node47", "@about": "#node47", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu28", "@id": "node48", "@about": "#node48", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node49", "@about": "#node49"}, {"@otu": "otu25", "@id": "node50", "@about": "#node50", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu26", "@id": "node51", "@about": "#node51", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu27", "@id": "node52", "@about": "#node52", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu4", "@id": "node10", "@about": "#node10", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node5", "@about": "#node5"}, {"@otu": "otu3", "@id": "node6", "@about": "#node6", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu19", "@id": "node7", "@about": "#node7", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}], "edge": [{"@length": 0.066969, "@source": "tree1_ROOT", "@target": "node4", "@id": "edge3", "@about": "#edge3"}, {"@source": "tree1_ROOT", "@target": "node3", "@id": "tree1_ROOT_EDGE", "@about": "#tree1_ROOT_EDGE"}, {"@length": 0.009839, "@source": "node3", "@target": "node1", "@id": "edge2", "@about": "#edge2"}, {"@length": 0.011978, "@source": "node1", "@target": "node2", "@id": "edge1", "@about": "#edge1"}, {"@length": 0.005094, "@source": "node1", "@target": "node8", "@id": "edge7", "@about": "#edge7"}, {"@length": 0.01656, "@source": "node8", "@target": "node53", "@id": "edge52", "@about": "#edge52"}, {"@length": 0.002891, "@source": "node8", "@target": "node9", "@id": "edge8", "@about": "#edge8"}, {"@length": 0.005807, "@source": "node9", "@target": "node11", "@id": "edge10", "@about": "#edge10"}, {"@length": 0.003039, "@source": "node11", "@target": "node12", "@id": "edge11", "@about": "#edge11"}, {"@length": 0.002491, "@source": "node12", "@target": "node13", "@id": "edge12", "@about": "#edge12"}, {"@length": 0.010297, "@source": "node13", "@target": "node14", "@id": "edge13", "@about": "#edge13"}, {"@length": 0.001032, "@source": "node14", "@target": "node15", "@id": "edge14", "@about": "#edge14"}, {"@length": 0.002417, "@source": "node14", "@target": "node16", "@id": "edge15", "@about": "#edge15"}, {"@length": 0.004426, "@source": "node13", "@target": "node17", "@id": "edge16", "@about": "#edge16"}, {"@length": 0.002412, "@source": "node17", "@target": "node18", "@id": "edge17", "@about": "#edge17"}, {"@length": 0.002461, "@source": "node18", "@target": "node19", "@id": "edge18", "@about": "#edge18"}, {"@length": 0.001019, "@source": "node18", "@target": "node20", "@id": "edge19", "@about": "#edge19"}, {"@length": 0.002328, "@source": "node17", "@target": "node21", "@id": "edge20", "@about": "#edge20"}, {"@length": 0.002445, "@source": "node17", "@target": "node22", "@id": "edge21", "@about": "#edge21"}, {"@length": 0.002457, "@source": "node12", "@target": "node23", "@id": "edge22", "@about": "#edge22"}, {"@length": 0.001939, "@source": "node23", "@target": "node24", "@id": "edge23", "@about": "#edge23"}, {"@length": 0.005323, "@source": "node24", "@target": "node25", "@id": "edge24", "@about": "#edge24"}, {"@length": 0.00246, "@source": "node24", "@target": "node26", "@id": "edge25", "@about": "#edge25"}, {"@length": 0.006637, "@source": "node23", "@target": "node27", "@id": "edge26", "@about": "#edge26"}, {"@length": 0.002341, "@source": "node12", "@target": "node28", "@id": "edge27", "@about": "#edge27"}, {"@length": 0.003888, "@source": "node28", "@target": "node29", "@id": "edge28", "@about": "#edge28"}, {"@length": 0.002431, "@source": "node28", "@target": "node30", "@id": "edge29", "@about": "#edge29"}, {"@length": 0.002359, "@source": "node30", "@target": "node31", "@id": "edge30", "@about": "#edge30"}, {"@length": 0.001055, "@source": "node30", "@target": "node32", "@id": "edge31", "@about": "#edge31"}, {"@length": 0.001011, "@source": "node28", "@target": "node33", "@id": "edge32", "@about": "#edge32"}, {"@length": 0.002456, "@source": "node28", "@target": "node34", "@id": "edge33", "@about": "#edge33"}, {"@length": 0.000997, "@source": "node34", "@target": "node35", "@id": "edge34", "@about": "#edge34"}, {"@length": 0.002436, "@source": "node34", "@target": "node36", "@id": "edge35", "@about": "#edge35"}, {"@length": 0.003904, "@source": "node12", "@target": "node37", "@id": "edge36", "@about": "#edge36"}, {"@length": 0.002599, "@source": "node37", "@target": "node38", "@id": "edge37", "@about": "#edge37"}, {"@length": 0.002451, "@source": "node38", "@target": "node39", "@id": "edge38", "@about": "#edge38"}, {"@length": 0.003715, "@source": "node39", "@target": "node40", "@id": "edge39", "@about": "#edge39"}, {"@length": 0.011194, "@source": "node40", "@target": "node41", "@id": "edge40", "@about": "#edge40"}, {"@length": 0.005386, "@source": "node40", "@target": "node42", "@id": "edge41", "@about": "#edge41"}, {"@length": 0.002465, "@source": "node40", "@target": "node43", "@id": "edge42", "@about": "#edge42"}, {"@length": 0.002429, "@source": "node39", "@target": "node44", "@id": "edge43", "@about": "#edge43"}, {"@length": 0.009851, "@source": "node38", "@target": "node45", "@id": "edge44", "@about": "#edge44"}, {"@length": 0.00243, "@source": "node45", "@target": "node46", "@id": "edge45", "@about": "#edge45"}, {"@length": 0.000995, "@source": "node45", "@target": "node47", "@id": "edge46", "@about": "#edge46"}, {"@length": 0.009843, "@source": "node37", "@target": "node48", "@id": "edge47", "@about": "#edge47"}, {"@length": 0.003723, "@source": "node12", "@target": "node49", "@id": "edge48", "@about": "#edge48"}, {"@length": 0.003908, "@source": "node49", "@target": "node50", "@id": "edge49", "@about": "#edge49"}, {"@length": 0.002426, "@source": "node49", "@target": "node51", "@id": "edge50", "@about": "#edge50"}, {"@length": 0.017092, "@source": "node11", "@target": "node52", "@id": "edge51", "@about": "#edge51"}, {"@length": 0.013697, "@source": "node9", "@target": "node10", "@id": "edge9", "@about": "#edge9"}, {"@length": 0.006803, "@source": "node3", "@target": "node5", "@id": "edge4", "@about": "#edge4"}, {"@length": 0.025799, "@source": "node5", "@target": "node6", "@id": "edge5", "@about": "#edge5"}, {"@length": 0.010357, "@source": "node5", "@target": "node7", "@id": "edge6", "@about": "#edge6"}], "@id": "tree1", "@about": "#tree1", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthDescription", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthMode", "@datatype": "xsd:string", "$": "ot:undefined"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:curatedType", "@datatype": "xsd:string", "$": "Bayesian inference "}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:inGroupClade", "@datatype": "xsd:string", "$": "node8"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:nodeLabelMode", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:nodeLabelTimeUnit", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:outGroupEdge", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:specifiedRoot", "@datatype": "xsd:string", "$": "tree1_ROOT"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:unrootedTree", "@datatype": "xsd:boolean", "$": false}]}], "@about": "#trees1"}, "meta": [{"agent": [{"@description": "Open Tree NexSON validation", "@id": "peyotl-validator", "@name": "api.opentreeoflife.org/validate", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": [], "otherProperty": [{"name": "pythonVersion", "value": "2.7.9"}, {"name": "pythonImplementation", "value": "CPython"}]}, "@about": "#peyotl-validator"}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0", "@about": "#opentree-curation-webapp"}], "@xsi:type": "nex:LiteralMeta", "@property": "ot:agents"}, {"annotation": [{"@dateCreated": "2018-08-02T15:49:10.161Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"searchContext": {"$": "All life"}, "substitutions": {"substitution": [{"@active": true, "@valid": true, "new": {"$": "Trupanea "}, "old": {"$": "T"}}]}, "useFuzzyMatching": false}, "refersTo": {"@top": {"$": "meta"}}}], "@about": "#otu-mapping-hints"}, {"@dateCreated": "2018-08-02T15:49:10.160Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": [{"@filename": "16s.nex.con.txt", "@size": 17277, "@type": "nexus", "@url": "/curator/download/supporting_files.doc.af2721765c077332.3136732e6e65782e636f6e2e747874.txt", "description": {"$": "Source data for tree(s) 'tree1'"}, "sourceForTree": [{"$": "tree1"}]}]}}, "refersTo": {"@top": {"$": "meta"}}}], "@about": "#supporting-files-metadata"}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu11", "otu12"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu14", "otu15"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu16", "otu17", "otu18"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu20", "otu21", "otu22"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu23", "otu24"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu26", "otu31", "otu4", "otu5"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu29", "otu30"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:branchLengthTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit", "^ot:reasonsToExcludeFromSynthesis"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:ottId"], "refersTo": {"@top": "otus", "@idref": ["otu26", "otu31", "otu4", "otu5"], "@otusID": "otus1", "@otuID": ["otu26", "otu31", "otu4", "otu5"]}, "@severity": "WARNING"}], "@about": "#peyotl-validator-event"}], "@xsi:type": "nex:LiteralMeta", "@property": "ot:annotationEvents"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:comment", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:curatorName", "@datatype": "xsd:string", "$": "Pietro de Mello"}, {"@href": "", "@xsi:type": "nex:ResourceMeta", "@rel": "ot:dataDeposit"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:focalClade", "@datatype": "xsd:int", "$": 34898}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:focalCladeOTTTaxonName", "@datatype": "xsd:string", "$": "Tephritidae"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:studyId", "@datatype": "xsd:string", "$": "ot_1588"}, {"@href": "http://dx.doi.org/10.1016/j.ympev.2015.04.025", "@xsi:type": "nex:ResourceMeta", "@rel": "ot:studyPublication"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:studyPublicationReference", "@datatype": "xsd:string", "$": "E. Viale, I. Martinez-Sa\u00f1udo, J.M. Brown, M. Simonato, V. Girolami, A. Squartini, A. Bressan, M. Faccoli, L. Mazzon, 2015, 'Pattern of association between endemic Hawaiian fruit flies (Diptera, Tephritidae) and their symbiotic bacteria: Evidence of cospeciation events and proposal of \u201cCandidatus Stammerula trupaneae\u201d', Molecular Phylogenetics and Evolution, vol. 90, pp. 67-79"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:studyYear", "@datatype": "xsd:int", "$": 2015}]}}, "branch2sha": {"master": "c33806c9ee11db205ee8c02a42e31b1c3128e299"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "35ab78366335d305dc283d31a0a6a7c266e4f44c", "author_name": "Pietro de Mello", "author_email": "ANONYMOUS", "date": "Thu, 2 Aug 2018 16:17:33 +0000", "date_ISO_8601": "2018-08-02 16:17:33 +0000", "relative_date": "8 years ago", "message_subject": "Update document 'ot_1588' via OpenTree API"}, {"id": "13dc51f228d77cd8b9db2e67978b1fb469ca4c61", "author_name": "Pietro de Mello", "author_email": "ANONYMOUS", "date": "Thu, 2 Aug 2018 15:49:09 +0000", "date_ISO_8601": "2018-08-02 15:49:09 +0000", "relative_date": "8 years ago", "message_subject": "Update document 'ot_1588' via OpenTree API"}]}