pythonVersion 2.7.9 pythonImplementation CPython false Animals ^(\S*)\s+\b false Source data for tree(s) 'tree1' tree1 otu131 otu145 otu16 otu2 otu302 otu59 otu97 ^ot:comment ^ot:nodeLabelMode ^ot:nodeLabelTimeUnit ^ot:reasonsToExcludeFromSynthesis rootedge ^ot:ottId Matt Girard Emily Jane McTavish Mark T. Holder 773483 Actinopterygii ot_1699 Lily C. Hughes, Guillermo Ortí, Yu Huang, Ying Sun, Carole C. Baldwin, Andrew W. Thompson, Dahiana Arcila, Ricardo Betancur-R., Chenhong Li, Leandro Becker, Nicolás Bellora, Xiaomeng Zhao, Xiaofeng Li, Min Wang, Chao Fang, Bing Xie, Zhuocheng Zhou, Hai Huang, Songlin Chen, Byrappa Venkatesh, Qiong Shi, 2018, 'Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data', Proceedings of the National Academy of Sciences, vol. 115, no. 24, pp. 6249-6254 2018 Latimeriidae Latimeria chalumnae 773491 Latimeria chalumnae Amiidae Amia calva 329623 Amia calva Trachyrincidae Trachyrincus murrayi 476239 Trachyrincus murrayi Moridae Mora moro 349846 Mora moro Moridae Laemonema laureysi 3630581 Laemonema laureysi Bathygadidae Bathygadus melanobranchus 656570 Bathygadus melanobranchus Macrouridae Macrourus berglax 155845 Macrourus berglax Macrouridae Malacocephalus occidentalis 531076 Malacocephalus occidentalis Phycidae Phycis phycis 674591 Phycis phycis Phycidae Phycis blennoides 659843 Phycis blennoides Lotidae Lota lota 440414 Lota lota (species in Deuterostomia) Lotidae Molva molva 659849 Molva molva (species in Deuterostomia) Lepisosteidae Atractosteus spatula 904117 Atractosteus spatula Lotidae Brosme brosme 863699 Brosme brosme (species in Deuterostomia) Gadidae Trisopterus minutus 926143 Trisopterus minutus Gadidae Gadiculus argenteus 1014044 Gadiculus argenteus Gadidae Pollachius virens 62649 Pollachius virens Gadidae Merlangius merlangus 635911 Merlangius merlangus Gadidae Melanogrammus aeglefinus 635904 Melanogrammus aeglefinus Gadidae Arctogadus glacialis 1014041 Arctogadus glacialis Gadidae Boreogadus saida 877055 Boreogadus saida Gadidae Theragra chalcogramma 1056842 Gadus chalcogrammus Gadidae Gadus morhua 114170 Gadus morhua (species in domain Eukaryota) Lepisosteidae Lepisosteus oculatus 1028028 Lepisosteus oculatus Regalecidae Regalecus glesne 617751 Regalecus glesne Lampridae Lampris guttatus 788076 Lampris guttatus Monocentridae Monocentris japonica 837716 Monocentris japonicus Berycidae Beryx splendens 118780 Beryx splendens Stephanoberycidae Acanthochaenus luetkenii 781203 Acanthochaenus luetkenii Rondeletiidae Rondeletia loricata 765014 Rondeletia loricata Holocentridae Myripristis berndti 375898 Myripristis berndti Holocentridae Myripristis jacobus 505430 Myripristis jacobus Holocentridae Sargocentron rubrum 837700 Sargocentron rubrum Holocentridae Holocentrus rufus 511304 Holocentrus rufus Lepisosteidae Lepisosteus platyrhincus 804455 Lepisosteus platyrhincus Holocentridae Neoniphon sammara 63608 Neoniphon sammara Holocentridae Neoniphon vexillarium Ophidiidae Brotula barbata 24387 Brotula barbata Ophidiidae Carapus acus 3629882 Carapus acus Ophidiidae Lamprogrammus exutus 3629623 Lamprogrammus exutus Batrachoididae Chatrabus melanurus 728762 Chatrabus melanurus Batrachoididae Porichthys notatus 720409 Porichthys notatus Batrachoididae Batrachomoeus trispinosus 713029 Batrachomoeus trispinosus Apogonidae Apogonichthyoides cathetogramma 309336 Apogon cathetogrammus Apogonidae Phaeoptyx conklini 515610 Phaeoptyx conklini Megalopidae Megalops cyprinoides 586610 Megalops cyprinoides Gobiidae Periophthalmodon schlosseri 3638005 Periophthalmodon schlosseri Gobiidae Periophthalmus magnuspinnatus 638255 Periophthalmus magnuspinnatus Gobiidae Scartelaos histophorus 284782 Scartelaos histophorus Gobiidae Boleophthalmus pectinirostris 47553 Boleophthalmus pectinirostris Gobiidae Coryphopterus lipernes 740167 Coryphopterus lipernes Gobiidae Lesueurigobius cf sanzoi Gobiidae Glossogobius aureus 618747 Glossogobius aureus Gobiidae Exyrias puntang 898400 Exyrias puntang Gobiidae Istigobius decoratus 17363 Istigobius decoratus Nomeidae Nomeus gronovii 408209 Nomeus gronovii Muraenidae Gymnothorax reevesii 143751 Gymnothorax reevesii Stromateidae Pampus argenteus 446839 Pampus argenteus Scombridae Scomberomorus regalis 266392 Scomberomorus regalis Scombridae Scomber scombrus 70561 Scomber scombrus Scombridae Thunnus albacares 833188 Thunnus albacares Scombridae Thunnus orientalis 833202 Thunnus orientalis Aulostomidae Aulostomus maculatus 231977 Aulostomus maculatus Aulostomidae Aulostomus sp 282709 Aulostomus Mullidae Parupeneus indicus 160649 Parupeneus indicus Callionymidae Foetorepus agassizii 3632745 Foetorepus agassizii Syngnathidae Syngnathoides biaculeatus 763321 Syngnathoides biaculeatus Chlopsidae Kaupichthys hyporoides Syngnathidae Syngnathus scovelli 251400 Syngnathus scovelli Syngnathidae Hippocampus erectus 630161 Hippocampus erectus Percidae Perca fluviatilis 186488 Perca fluviatilis Percophidae Chrionema squamentum 3639743 Chrionema squamentum Serranidae Pronotogrammus martinicensis 3633910 Pronotogrammus martinicensis Nototheniidae Lepidonotothen nudifrons 260052 Lepidonotothen nudifrons Nototheniidae Notothenia coriiceps 258643 Notothenia coriiceps Bathydraconidae Gymnodraco acuticeps 781785 Gymnodraco acuticeps Channichthydae Chaenocephalus aceratus 708977 Chaenocephalus aceratus Peristediidae Peristedion brevirostre 3631567 Peristedion brevirostre Congridae Conger cinereus 364618 Conger cinereus Anoplopomatidae Anoplopoma fimbria 441856 Anoplopoma fimbria Gasterosteidae Gasterosteus aculeatus 401066 Gasterosteus aculeatus Cyclopteridae Cyclopterus lumpus 237344 Cyclopterus lumpus Cottidae Cottus rhenanus 795369 Cottus rhenanus Cottidae Myoxocephalus scorpius 942655 Myoxocephalus scorpius Scorpaenidae Scorpaenopsis cirrosa 137645 Scorpaenopsis cirrosa Synanceiidae Synanceia verrucosa 98143 Synanceia verrucosa Scorpaenidae Dendrochirus zebra 1013556 Dendrochirus zebra Scorpaenidae Pontinus castor 3632374 Pontinus castor Sebastidae Sebastes norvegicus 1088441 Sebastes norvegicus Anguillidae Anguilla japonica 854198 Anguilla japonica Sebastidae Sebastes rubrivinctus 212780 Sebastes rubrivinctus Sebastidae Sebastes nigrocinctus 9619 Sebastes nigrocinctus Epigonidae Epigonus sp 78408 Epigonus Lateolabracidae Lateolabrax maculatus 331155 Lateolabrax maculatus Gerreidae Gerres filamentosus 132687 Gerres filamentosus Gerreidae Eucinostomus jonesi 763956 Eucinostomus jonesii Pinguipedidae Parapercis xanthozona 3635256 Parapercis xanthozona Labridae Thalassoma bifasciatum 907850 Thalassoma bifasciatum Scaridae Scarus iseri 686634 Scarus iseri Scaridae Scarus ghobban 548878 Scarus ghobban Anguillidae Anguilla rostrata 854212 Anguilla rostrata Labridae Symphodus melops 553191 Symphodus melops Labridae Labrus bergylta 292710 Labrus bergylta Terapontidae Terapon jarbua 711787 Terapon jarbua Oplegnathidae Oplegnathus punctatus 711805 Oplegnathus punctatus Cirrhitidae Amblycirrhitus pinos 1087028 Amblycirrhitus pinos Centrarchidae Micropterus floridanus 535343 Micropterus floridanus Percichthyidae Siniperca scherzeri 114857 Siniperca scherzeri Percichthyidae Coreoperca whiteheadi 114862 Coreoperca whiteheadi Moronidae Morone saxatilis 223669 Morone saxatilis Moronidae Dicentrarchus labrax 3549 Dicentrarchus labrax Xenopus tropicalis Anguillidae Anguilla anguilla 854201 Anguilla anguilla Ephippidae Chaetodipterus faber 824736 Chaetodipterus faber Drepaneidae Drepane punctata 250267 Drepane punctata Datnioididae Datnioides microlepis 3634563 Datnioides microlepis Lutjanidae Lutjanus sebae 7434 Lutjanus sebae Lutjanidae Lutjanus fulviflamma 616721 Lutjanus fulviflamma Haemulidae Haemulon flavolineatum 432196 Haemulon flavolineatum Haemulidae Haemulon chrysargyreum 716554 Haemulon chrysargyreum Sciaenidae Equetus punctatus 702680 Equetus punctatus Sciaenidae Larimichthys crocea 679823 Larimichthys crocea Sciaenidae Miichthys miiuy 1066036 Miichthys miiuy Pantodontidae Pantodon buchholzi 108350 Pantodon buchholzi Acanthuridae Acanthurus tractus 4135120 Acanthurus tractus Pomacanthidae Pomacanthus paru 351289 Pomacanthus paru Leiognathidae Photopectoralis bindus 654582 Photopectoralis bindus Chaetodontidae Chaetodon auriga 766703 Chaetodon auriga Siganidae Siganus guttatus 830765 Siganus guttatus Sparidae Evynnis cardinalis 1060516 Evynnis cardinalis Sparidae Spondyliosoma cantharus 271156 Spondyliosoma cantharus Sparidae Acanthopagrus latus 760733 Acanthopagrus latus Sparidae Acanthopagrus schlegelii 380194 Acanthopagrus schlegelii Caproidae Antigonia capros 917944 Antigonia capros Osteoglossidae Osteoglossum bicirrhosum 279997 Osteoglossum bicirrhosum Priacanthidae Priacanthus tayenus 752890 Priacanthus tayenus Chaunacidae Chaunax pictus 726666 Chaunax pictus Antennariidae Antennarius striatus 496400 Antennarius striatus Ostraciidae Lactoria cornuta 1068742 Lactoria cornuta Ostraciidae Ostracion rhinorhynchos 385730 Ostracion rhinorhynchos Balistidae Pseudobalistes fuscus 1090836 Pseudobalistes fuscus Molidae Mola mola 457786 Mola mola Diodontidae Diodon holocanthus 166940 Diodon holocanthus Tetraodontidae Tetraodon nigroviridis 1085993 Tetraodon nigroviridis Tetraodontidae Takifugu flavidus 465404 Takifugu flavidus Osteoglossidae Scleropages formosus 335717 Scleropages formosus Tetraodontidae Takifugu rubripes 65341 Takifugu rubripes Synbranchidae Monopterus albus 655999 Monopterus albus Mastacembelidae Macrognathus aculeatus 758692 Macrognathus aculeatus Mastacembelidae Mastacembelus armatus 394575 Mastacembelus armatus Channidae Channa micropeltes 332862 Channa micropeltes Channidae Channa argus 229205 Channa argus Channidae Channa gachua 589530 Channa gachua Osphronemidae Osphronemus goramy 612525 Osphronemus goramy Helostomatidae Helostoma temminckii 754856 Helostoma temminkii Anabantidae Anabas testudineus 896431 Anabas testudineus Notopteridae Papyrocranus afer 239121 Papyrocranus afer Centropomidae Centropomus undecimalis 317368 Centropomus undecimalis Centropomidae Lates calcarifer 437601 Lates calcarifer (species in Deuterostomia) Toxotidae Toxotes jaculatrix 712588 Toxotes jaculatrix Coryphaenidae Coryphaena hippurus 223663 Coryphaena hippurus Carangidae Trachinotus ovatus 130358 Trachinotus ovatus Carangidae Seriola lalandi 597848 Seriola lalandi Carangidae Selene dorsalis 637344 Selene dorsalis Carangidae Caranx ignobilis 423847 Caranx ignobilis Polynemidae Polynemus dubius 3633146 Polynemus dubius Soleidae Solea ovata 346570 Solea ovata Morymridae Gnathonemus petersii 115478 Gnathonemus petersii Cynoglossidae Cynoglossus semilaevis 906506 Cynoglossus semilaevis Scophthalmidae Scophthalmus maximus 778695 Scophthalmus maximus Paralichthydae Paralichthys olivaceus 883392 Paralichthys olivaceus Pleuronectidae Hippoglossus hippoglossus 408328 Hippoglossus hippoglossus Pleuronectidae Pseudopleuronectes yokohamae 608831 Pseudopleuronectes yokohamae Ambassidae Parambassis pulcinella 3634779 Parambassis pulcinella Mugilidae Liza haematocheila 963124 Liza haematocheila Mugilidae Mugil cephalus 418648 Mugil cephalus Pseudochromidae Pseudochromis fuscus 1030717 Pseudochromis fuscus Pomacentridae Stegastes partitus 345269 Stegastes partitus Mormyridae Mormyrus tapirus 415379 Mormyrus tapirus Pomacentridae Amphiprion melanopus 45635 Amphiprion melanopus Pomacentridae Dascyllus trimaculatus 312258 Dascyllus trimaculatus Pomacentridae Chromis chromis 845473 Chromis chromis Grammatidae Lipogramma evides 3635321 Lipogramma evides Opistognathidae Opistognathus aurifrons 459858 Opistognathus aurifrons Gobiesocidae Tomicodon sp 41459 Tomicodon Gobiesocidae Acyrtus rubiginosus 3638715 Acyrtus rubiginosus Tripterygiidae Enneanectes sp 423198 Enneanectes Blenniidae Parablennius parvicornis 880516 Parablennius parvicornis Chaenopsidae Acanthemblemaria spinosa 57346 Acanthemblemaria spinosa Engraulidae Coilia nasus 39750 Coilia nasus Cichlidae Parachromis managuensis 797202 Parachromis managuensis Cichlidae Amphilophus citrinellus 358037 Amphilophus citrinellus Cichlidae Oreochromis niloticus 288063 Oreochromis niloticus Cichlidae Neolamprologus brichardi 279935 Neolamprologus brichardi Cichlidae Haplochromis burtoni 710025 Haplochromis burtoni Cichlidae Pundamilia nyererei 7106 Pundamilia nyererei Cichlidae Maylandia zebra 677719 Maylandia zebra Cichlidae Mchenga conophoros 42526 Mchenga conophoros Cichlidae Labeotropheus fuelleborni 1018144 Labeotropheus fuelleborni Cichlidae Rhamphochromis esox 594280 Rhamphochromis esox Engraulidae Engraulis encrasicolus 222963 Engraulis encrasicolus Cichlidae Melanochromis auratus 855526 Melanochromis auratus Hemiramphidae Hyporhamphus intermedius 3641217 Hyporhamphus intermedius Adrianichthyidae Oryzias mekongensis 270077 Oryzias mekongensis Adrianichthyidae Oryzias latipes 942673 Oryzias latipes Pseudomugilidae Pseudomugil paskai 3641091 Pseudomugil paskai Melanotaeniidae Glossolepis incisus 976546 Glossolepis incisus Melanotaeniidae Melanotaenia praecox 872013 Melanotaenia praecox Atherinopsidae Menidia menidia 189767 Menidia menidia Atherinopsidae Basilichthys microlepidotus 267657 Basilichthys microlepidotus Atherinopsidae Odontesthes bonariensis 960735 Odontesthes bonariensis Clupeidae Clupea harengus 1005932 Clupea harengus Aplocheilidae Pachypanchax sakaramyi 816990 Pachypanchax sakaramyi Nothobranchiidae Nothobranchius furzeri 513643 Nothobranchius furzeri Aplocheilidae Aplocheilus lineatus 890292 Aplocheilus lineatus Rivulidae Austrofundulus limnaeus 495268 Austrofundulus limnaeus Rivulidae Kryptolebias marmoratus 229709 Kryptolebias marmoratus Goodeidae Ameca splendens 840804 Ameca splendens Fundulidae Fundulus heteroclitus 583633 Fundulus heteroclitus Cyprinodontidae Cyprinodon variegatus 82335 Cyprinodon variegatus Cyprinodontidae Cyprinodon nevadensis pectoralis 619264 Cyprinodon nevadensis pectoralis Poeciliidae Poecilia reticulata 312452 Poecilia reticulata Protopteridae Protopterus aethiopicus 199355 Protopterus aethiopicus Clupeidae Amblygaster clupeoides 836327 Amblygaster clupeoides Poeciliidae Poecilia formosa 998168 Poecilia formosa Poeciliidae Poeciliopsis prolifica 515285 Poeciliopsis prolifica Poeciliidae Gambusia affinis whole Poeciliidae Xiphophorus hellerii 312435 Xiphophorus hellerii Poeciliidae Xiphophorus maculatus 416852 Xiphophorus maculatus Poeciliidae Xiphophorus couchianus 1026718 Xiphophorus couchianus Clupeidae Alosa alosa 994167 Alosa alosa Chanidae Chanos chanos 575844 Chanos chanos Gyrinocheilidae Gyrinocheilus aymonieri 341392 Gyrinocheilus aymonieri Botiidae Sinibotia superciliaris 994172 Sinibotia superciliaris Nemacheilidae Homatula potanini 856242 Homatula potanini Cobitidae Misgurnus anguillicaudatus 312382 Misgurnus anguillicaudatus Danionidae Danio rerio 1005914 Danio rerio Tincidae Tinca tinca 753550 Tinca tinca Leuciscidae Pimephales promelas 564459 Pimephales promelas Polypteridae Erpetoichthys calabaricus 451269 Erpetoichthys calabaricus Leuciscidae Leuciscus waleckii 631543 Leuciscus waleckii Cyprinidae Cyprinus carpio 429083 Cyprinus carpio Cyprinidae Sinocyclocheilus rhinocerous 905012 Sinocyclocheilus rhinocerous Cyprinidae Sinocyclocheilus anshuiensis 5839047 Sinocyclocheilus anshuiensis Cyprinidae Sinocyclocheilus grahami 211553 Sinocyclocheilus grahami Distichodontidae Distichodus sexfasciatus 185780 Distichodus sexfasciatus Serrasalmidae Pygocentrus nattereri 649803 Pygocentrus nattereri Erythrinidae Erythrinus erythrinus 183753 Erythrinus erythrinus Hepsetidae Hepsetus odoe 128234 Hepsetus odoe Gasteropelecidae Gasteropelecus sp 783048 Gasteropelecus Polypteridae Polypterus bichir 735234 Polypterus bichir Characidae Astyanax mexicanus 701518 Astyanax mexicanus Characidae Thayeria boehlkei 625998 Thayeria boehlkei Characidae Hemigrammus bleheri 440378 Hemigrammus bleheri Apteronotidae Apteronotus albifrons 789557 Apteronotus albifrons Gymnotidae Electrophorus electricus 216168 Electrophorus electricus Rhamphichthyidae Rhamphichthys rostratus 748412 Rhamphichthys rostratus Callichthyidae Corydoras julii 431076 Corydoras julii Loricariidae Pterygoplichthys pardalis 904626 Pterygoplichthys pardalis Plotosidae Plotosus lineatus 949069 Plotosus lineatus Pangasiidae Pangasianodon hypophthalamus Polypteridae Polypterus endlicheri 536720 Polypterus endlicherii Siluridae Silurus asotus 967323 Silurus asotus Ictaluridae Ictalurus punctatus 701523 Ictalurus punctatus Bagridae Hemibagrus guttatus 734370 Hemibagrus guttatus Sisoridae Glyptothorax sinensis 785868 Glyptothorax sinensis Amblycipitidae Liobagrus styani 516685 Liobagrus styani Lepidogalaxiidae Lepidogalaxias salamandroides 1043388 Lepidogalaxias salamandroides Esocidae Esox lucius 739941 Esox lucius Umbridae Umbra pygmae 586177 Umbra pygmaea Salmonidae Coregonus clupeaformis 629345 Coregonus clupeaformis Salmonidae Thymallus thymallus 3887 Thymallus thymallus Polyodontidae Polyodon spathula 904101 Polyodon spathula Salmonidae Salmo salar 688328 Salmo salar Salmonidae Oncorhynchus mykiss 165368 Oncorhynchus mykiss (species in domain Eukaryota) Salmonidae Salvelinus fontinalis 688339 Salvelinus fontinalis Argentinidae Argentina sp 43670 Argentina Galaxiidae Galaxias maculatus 77073 Galaxias maculatus Galaxiidae Galaxiella nigrostriata 1043396 Galaxiella nigrostriata Stomiidae Borostomias antarcticus 258156 Borostomias antarcticus Osmeridae Osmerus eperlanus 987406 Osmerus eperlanus Plecoglossidae Plecoglossus altivelis 486933 Plecoglossus altivelis Salangidae Protosalanx hyalocranius 429728 Protosalanx hyalocranius Acipenseridae Acipenser sinensis 751883 Acipenser sinensis Synodontidae Synodus intermedius 758202 Synodus intermedius Chlorophthalmidae Parasudis fraserbrunneri 3629293 Parasudis fraserbrunneri Chlorophthalmidae Chlorophthalmus agassizi 867427 Chlorophthalmus agassizi Ateleopodidae Guentherus altivela 3629161 Guentherus altivela Myctophidae Benthosema glaciale 80726 Benthosema glaciale Polymixiidae Polymixia japonica 617740 Polymixia japonica Amblyopsidae Typhlichthys subterraneus 998455 Typhlichthys subterraneus Percopsidae Percopsis transmontana 342732 Percopsis transmontana Percopsidae Percopsis omiscomaycus 358581 Percopsis omiscomaycus Zeidae Zeus faber 918920 Zeus faber Acipenseridae Acipenser naccarii 860194 Acipenser naccarii Parazenidae Cyttopsis roseus 331284 Cyttopsis rosea Parazenidae Cyttopsis sp 331283 Cyttopsis Stylephoridae Stylephorus chordatus 146678 Stylephorus chordatus Bregmacerotidae Bregmaceros cantori 656564 Bregmaceros cantori Merlucciidae Merluccius polli 834108 Merluccius polli Merlucciidae Merluccius capensis 757328 Merluccius capensis Merlucciidae Merluccius merluccius 62642 Merluccius merluccius Melanonidae Melanorus zugmayeri Muraenolepididae Muraenolepis marmoratus 357752 Muraenolepis marmoratus Trachyrincidae Trachyrincus scabrus 562470 Trachyrincus scabrus None ot:other Bayesian inference node7 node1 false true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true