Hyde K.D. Moncalvo J. He M. Wu F. Zhou J. Cui B. He S. Dai Y.C. Wu G. Yang Z. Stata M. S�nchez-ram�rez S. Li G. Zhao R. Zhao R., Li G., S�nchez-ram�rez S., Stata M., Yang Z., Wu G., Dai Y.C., He S., Cui B., Zhou J., Wu F., He M., Moncalvo J., & Hyde K.D. 2017-09-20 Fungal Diversity Wallemiomycotina taxonomy systematics Fungi A six-gene phylogenetic overview of Basidiomycota and allied phyla with estimated divergence times of higher taxa and a phyloproteomics perspective. Zhao R., Li G., S�nchez-ram�rez S., Stata M., Yang Z., Wu G., Dai Y.C., He S., Cui B., Zhou J., Wu F., He M., Moncalvo J., & Hyde K.D. 2017. A six-gene phylogenetic overview of Basidiomycota and allied phyla with estimated divergence times of higher taxa and a phyloproteomics perspective. 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A six-gene phylogenetic overview of Basidiomycota and allied phyla with estimated divergence times of higher taxa and a phyloproteomics perspective. Fungal Diversity, 84(1): 43-74. 2017 2017-04-01 10.1007/s13225-017-0381-5 74 2017-09-20 1 43-74 2017 Fungal Diversity Study 43 84 Generated on Thu Sep 27 18:02:14 UTC 2018 Mapped from TreeBASE schema using org.cipres.treebase.domain.nexus.nexml.NexmlDocumentWriter@62f7fed6 $Rev$ 20837 A six-gene phylogenetic overview of Basidiomycota and allied phyla with estimated divergence times of higher taxa and a phyloproteomics perspective. 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Ustacystis waldsteiniae Insolibasidium deformans 1071761 Insolibasidium deformans Panaeolina foenisecii 263337 Panaeolina foenisecii Panaeolus foenisecii Leucocybe candicans Derxomyces pseudoschimicola CBS7354T 115511 Derxomyces pseudoschimicola Peltula umbilicata AFTOLID891 132432 Peltula umbilicata Bullera hannae CBS8286 512987 Bullera hannae Chlorophyllum agaricoides AFTOLID440 96219 Chlorophyllum agaricoides Megacollybia platyphylla AFTOLID560 292755 Megacollybia platyphylla Nolanea sp ZRL20151219 Gautieria crispa 61308 640665 Gautieria crispa Lycoperdon perlatum ZRL20151173 397715 Lycoperdon perlatum Filobasidium globisporum CBS7642 132163 Filobasidium globisporum Urocystis eranthidis hmk292 671327 Urocystis eranthidis Piskurozyma capsuligenum CBS1906T Leucocoprinus fragilissimus ZRL20151466 163796 Leucocoprinus fragilissimus Coleosporium asterum 309216 Coleosporium asterum Hymenagaricus sp AFTOLID1383 980105 Hymenagaricus Sterigmatomyces hyphaenes CBS7811 Lentaria Lentaria pinicola_M89 Thelephora ganbajun ZRL20151295 245765 Thelephora ganbajun Veluticeps abietina GBB_398 757941 Veluticeps abietina Gloeocystidiellum clavuligerum He2209 1050074 Gloeocystidiellum clavuligerum Gummiglobus agglutinosporus OSC58784 42088 Gummiglobus agglutinosporus Armillaria mellea AFTOLID449 1047949 Armillaria mellea Gymnopilus picreus ZRL2015011 566261 Gymnopilus picreus Phallus hadriani 107658 984161 Phallus hadriani Sporobolomyces sasicola AS_2_1933 871554 Sporobolomyces sasicola Polyporoletus sublividus JA030918 904068 Polyporoletus sublividus Chaenotheca phaeocephala AFUA_7G01920 964330 Chaenotheca phaeocephala Chlorophyllum sp ZRL20151862 1010493 Chlorophyllum Cortinarius aurilicis 882837 Cortinarius aurilicis Kockovaella chinensis CBS8278 Gloeohypochnicium analogum 503790 Gloeohypochnicium analogum Puccinia hordei 42577 Puccinia hordei Tremella flava CBS8471 269696 Tremella flava Udeniomyces pyricola CBS6754 63850 Udeniomyces pyricola Gloeophyllum subferrugineum 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ZRL20151405 181976 Nidula (genus in Opisthokonta) Derxomyces anomala CBS9607T Goffeauzyma agrionensis CBS10799T Gymnopus contrarius PBM_2711 560700 Gymnopus contrarius Xeromphalina campanella AFTOLID1524 918135 Xeromphalina campanella Pluteus hongoi ZRL20151600 3832780 Pluteus hongoi Ustilago maydis CBS504_76_MS_115 285447 Ustilago maydis Ustilago maydis 521 Scleroderma areolatum AWW211 672877 Scleroderma areolatum Tricholomopsis decora AFTOLID537 835499 Tricholomopsis decora Saitozyma podzolica CBS6819 Mycogloea sp TUBFO40962 979592 Mycogloea Chrysomphalina chrysophylla AFTOLID1523 464135 Chrysomphalina chrysophylla Ramaria araiospora M739 207778 Ramaria araiospora Climacodon septentrionalis ZW 284555 Climacodon septentrionalis Phragmotaenium indicum HUV_18022 3839814 Phragmotaenium indicum Typhula phacorrhiza 148742 Typhula phacorrhiza Pholiota nubigena AFTOLID1500 Multifurca ochricompacta BB02_107 5299521 Multifurca ochricompacta Micropsalliota globocystis zrl2013465 394324 Micropsalliota globocystis Entorrhiza aschersoniana KRAM_F_56778 1045807 Entorrhiza aschersoniana Cortinarius iodes 735799 Cortinarius iodes Trichosporon inkin CBS5585 73136 Trichosporon inkin Tausonia pullulans CBS2532 Nidularia farcta Nidularia farcta ZRL2015047 Coprinus comatus AFTOLID626 789172 Coprinus comatus Erythrobasidium hasegawianum AS_2_1923T 90102 Erythrobasidium hasegawianum Leucosporidium intermedium Inocybe flocculosa ZRL20151789 827847 Inocybe flocculosa Clitocybe dealbata 5687005 Clitocybe dealbata Carcinomyces arundinariae CBS9931T Cytidia salicina Haikonen24631 808036 Cytidia salicina Inocybe unicolor 705228 Inocybe unicolor Mallocybe unicolor Gallacea scleroderma OSC59621 929421 Gallacea scleroderma Hyalopsora polypodii 519969 Hyalopsora polypodii Entorrhiza parvula TUB021488 3840396 Entorrhiza parvula Laccaria ochropurpurea 760430 Laccaria ochropurpurea Artomyces microspora Artomyces microspora ZRL2015014 Gomphus brunneus 034190_46 109814 Gomphus brunneus Lentinus 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OSC122590 Gomphidius roseus MB95_038 1025503 Gomphidius roseus Microbotryum reticulatum 162054 Microbotryum reticulatum Heinemannomyces sp zrl185 785541 Heinemannomyces Phyllotopsis sp MB35 487011 Phyllotopsis Austroboletus aff fusisporus_HKAS52683 5475524 Austroboletus aff. fusisporus HKAS 52683 Neurospora crassa OR74A 572462 Neurospora crassa Schizosaccharomyces pombe 990004 Schizosaccharomyces pombe Wallemia sebi EXF483 1076517 Wallemia sebi Boletus edulis HMJAU4637 110737 Boletus edulis Trametes versicolor ZRL20151477 581141 Trametes versicolor Russula cyanoxantha HMAS253220 611410 Russula cyanoxantha Gymnopus dryophilus ZRL20151666 368138 Gymnopus dryophilus Neolentinus adhaerens DAOM214911 982764 Neolentinus adhaerens Vanrija musci CBS8899 Kavinia alboviridis 102140 279602 Kavinia alboviridis Macrolepiota dolichaula xml2013058 929295 Macrolepiota dolichaula Chondrogaster angustisporus OSC62041 462106 Chondrogaster angustisporus Russula rosea HMAS253340 489992 Russula rosea Armillaria cepistipes ZRL20151654 65592 Armillaria cepistipes Gomphus clavatus 97587 731258 Gomphus clavatus Tritirachium roseum CBS183_42 198221 Tritirachium roseum Serpula lacrymans REG_383 161913 Serpula lacrymans Anthurus archeri Anthurus archeri REB_2182 Russula griseocarnosa HMAS251548 5299329 Russula griseocarnosa Trechispora alnicola CBS577_83 211567 Trechispora alnicola Russula chiui HMAS268992 5684033 Russula chiui Dacrymyces chrysospermus TUFC13115 985688 Dacrymyces chrysospermus Capnodium coffeae CBS147_52 162102 Capnodium coffeae Gymnopus confluens ZRL20151148 1069360 Gymnopus confluens Ampulloclitocybe clavipes AFTOLID542 454800 Ampulloclitocybe clavipes Mycaureola dilseae BM1785 948701 Mycaureola dilseae Ganoderma australe ZRL20151500 413026 Ganoderma australe Heterogastridium pycnidioideum 585407 Heterogastridium pycnidioideum Platygloea vestita Cutaneotrichosporon cutaneum CBS2466 Callistosporium sp AFTOLID978 943808 Callistosporium Collybia tuberosa AFTOLID557 165991 Collybia tuberosa Ustilago hordei CBS131470 785363 Ustilago hordei Cystofilobasidium bisporidii CBS6346 90111 Cystofilobasidium bisporidii Multifurca furcata RH7804 5299522 Multifurca furcata Lactarius scrobiculatus HMAS264940 561237 Lactarius scrobiculatus Chionosphaera apobasidialis 1085833 Chionosphaera apobasidialis Simocybe serrulata AFTOLID970 489165 Simocybe serrulata Cyptotrama asprata ZRL2015093 1096213 Cyptotrama asprata Hygrophorus sp ZRL20151871 135578 Hygrophorus Ustanciosporium gigantosporum HRK023 105039 Ustanciosporium gigantosporum Lepista sordida ZRL20151906 154545 Lepista sordida Aroramyces radiatus OSCVerbeken99_062 891334 Aroramyces radiatus Tremellodendron pallidum PBM2324 5437022 Tremellodendron pallidum Wallemia muriae EXF1054 344407 Wallemia muriae Rhynchogastrema noutii CBS8364T Lacrymaria lacrymabunda AFTOLID478 128546 Lacrymaria lacrymabunda Melanotaenium euphorbiae HUV17733 469131 Melanotaenium euphorbiae Lepiota cristata ZRL20151133 20519 Lepiota cristata Ertzia akagerae BR Mycena amicta AFTOLID1908 812157 Mycena amicta Rhamphospora nymphaeae CBS72_38 13095 Rhamphospora nymphaeae Malajczukia amicosum OSC59295 Agrocybe praecox AFTOLID728 887971 Agrocybe praecox Kwoniella dendrophila CBS6074 Urocystis colchici RB2041 995707 Urocystis colchici Leucogaster citrnus OSC117691 Naematelia aurantia CBS6965R Lyophyllum decastes M8716 25198 Lyophyllum decastes Megacollybia marginata ZRL20151245 557098 Megacollybia marginata Suillus pictus MB03_093 793740 Suillus pictus Amylostereum aeroletum He1674 Ileodictyon gracile 2024221 82150 Ileodictyon gracile Thanatophytum crocorum Helicobasidium purpureum Malassezia restricta CBS7877T 604329 Malassezia restricta Volvocisporium triumfetticola RB2070 573127 Volvocisporium triumfetticola Tricholoma terreum HDT53510 382617 Tricholoma terreum Sebacina incrustans AFTOLID1626 274152 Sebacina incrustans Coniophora arida FP_104367 429071 Coniophora arida Pterula cf echo_ZRL20151311 Clavariadelphus truncatus 67280 262333 Clavariadelphus truncatus Astraeus hygrometricus Bneil_MB_05_029 1002805 Astraeus hygrometricus Botryobasidium botryosum Botryobasidium botryosum AFTOLID604 Buckleyzyma armeniaca JCM8977T Calicium salicium CBS100898 Lyophyllum sp PBM_2688 5344824 Lyophyllum Sympodiomycopsis paphiopedili CBS7429 901891 Sympodiomycopsis paphiopedili Schizonella melanogramma CBS174_42 469133 Schizonella melanogramma Amanita griseofolia ZRL20151138 330512 Amanita griseofolia Mixia osmundae 85979 Mixia osmundae Cintractia axicola HUV_17460 1045803 Cintractia axicola Gyrodontium sacchari MUCL40589 542883 Gyrodontium sacchari Cheimonophyllum candidissimum AFTOLID1765 387031 Cheimonophyllum candidissimum Neolentinus lepideus DAOM208724 982765 Neolentinus lepideus Singerocybe alboinfundibuliformis ZRL20151998 Scytinostromella nannfeldtii NH7476 453502 Scytinostromella nannfeldtii Solicoccozyma aerius CBS155 Chamonixia sp Muroi_361 429077 Chamonixia Gautieria pterosperma 69649 484310 Gautieria pterosperma Limnoperdon incarnatum 801487 Limnoperdon incarnatum Hysterangium sp RMSS_Miller10100 789776 Hysterangium Exobasidium rhododendri CBS101457 1045812 Exobasidium rhododendri Hebeloma angustilamellatum AFTOLID543 717380 Hebeloma angustilamellatum Bensingtonia ciliata TAS2.1945 722151 Bensingtonia ciliata Clavariadelphus ligula 67068 243515 Clavariadelphus ligula Tricholoma saponaceum 213944 Tricholoma saponaceum Agaricus augustus ZRl2012598 869659 Agaricus augustus Amylocorticium cebennense HHB2808 508970 Amylocorticium cebennense Heliocybe sulcata IBUG_9930 685636 Heliocybe sulcata Endocronartium harknessii 563422 Endocronartium harknessii Termitomyces sp AFTOLID1384 865693 Termitomyces Pleuroflammula flammea 811488 Pleuroflammula flammea Turbinellus floccosus 69167 283252 Turbinellus floccosus Russula laricina HMAS267755 185643 Russula laricina Tritirachium oryzae CBS164_67 317238 Tritirachium oryzae Sakaguchia lamellibrachiae CBS9598T Aleurocystidiellum disciforme Roccella fuciformis AFTOLID126 753808 Roccella fuciformis Asterophora lycoperdoides CBS170_86 434500 Asterophora lycoperdoides Chondrogaster pachysporus OSC49298 583076 Chondrogaster pachysporus Muribasidiospora indica FO_47397 573124 Muribasidiospora indica Kondoa malvinella TAS2.1946 1084584 Kondoa malvinella Anthracophyllum archeri AFTOLID973 1002030 Anthracophyllum archeri Borofutus dhakanus HKAS73789 482022 Borofutus dhakanus Clathrus chrysomycelinus 75096 583025 Clathrus chrysomycelinus Bondarzewia montana Bondarzewia montana DAOM415 Cerinomyces ceraceus HHB8969 197278 Cerinomyces ceraceus Mycena haematopus ZRL20151471 755361 Mycena haematopus Lysurus borealis 39531 134411 Lysurus borealis Dioszegia cryoxerica CBS10919T 441981 Dioszegia cryoxerica Phragmidium sp 948696 Phragmidium Rhopalogaster transversarium 81680 551710 Rhopalogaster transversarium Cystobasidium benthicum JCM10901 Gerronema nemorale ZRL2015063_1 1048349 Gerronema nemorale Clitopilus sp VHAs0702 438739 Clitopilus Anomoloma myceliosum MJL_4413 793055 Anomoloma myceliosum Rhamphospora nymphaeae RB862 13095 Rhamphospora nymphaeae Takashimella formosensis CBS9812 Crepidotus cf applanatus 539160 Crepidotus applanatus Mrakia frigida CBS5266 761626 Mrakia frigida Doassansia hygrophilae Doassansia hygrophilae HUV_15474 Urocystis eranthidis hmk292.2 671327 Urocystis eranthidis Vuilleminia comedens 715822 Vuilleminia comedens Veluticeps berkeleyi HHB8594 362539 Veluticeps berkeleyi Ustilentyloma graminis Radiigera taylorii 59760 5689022 Radiigera taylorii Gloeophyllum striatum ARIZAN027866 183600 Gloeophyllum striatum Xerula sinopudens ZRL20151504 3832338 Xerula sinopudens Auricularia heimuer Heishan 5683504 Auricularia heimuer Chaetocalathus liliputianus 38799 Chaetocalathus liliputianus Erratomyces patelii MP_1991_M 1045811 Erratomyces patelii Heterobasidion annosum DAOM73191 1072058 Heterobasidion annosum Tomentella sp AFTOLID1016 86142 Tomentella Laccaria sp ZRL20151663 985684 Laccaria Quambalaria cyanescens CBS876_73 392046 Quambalaria cyanescens Protubera hautuensis OSC59673 82156 Protubera hautuensis Holtermanniella festucosa CBS10162T 945392 Holtermanniella festucosa Hannaell asinensis CBS7238 Gymnosporangium juniperi virginianae Pseudobensingtonia ingoldii JCM7445 Pisolithus tinctorius AWW219 1075181 Pisolithus tinctorius Bannoa bischofiae JCM10338T Apiotrichum dulcitum CBS8257 Mythicomyces corneipes 83322 Mythicomyces corneipes Hymenopellis raphanipes ZRL20151386 438997 Hymenopellis raphanipes Clitopilus prunulus ZRL20151516 438742 Clitopilus prunulus Symmetrospora coprosmae JCM8772T Lanmaoa asiatica HKAS63603 5686042 Lanmaoa asiatica Phaeomarasmius proximans AFTOLID979 487937 Phaeomarasmius proximans Protubera jamaicensis T28248 82157 Protubera jamaicensis Amanita phalloides 545199 Amanita phalloides Nothocastoreum cretaceum OSC79925 603842 Nothocastoreum cretaceum Leptosporomyces raunkiaerii HHB7628 Grifola frondosa DSH_s_n 868676 Grifola frondosa Dictyophora indusiata 36088 986314 Dictyophora indusiata (merged with Phallus) Hebeloma olympianum 982626 Hebeloma olympianum Genolevuria armeniacus CBS10050T Agaricus bisporus AFTOLID448 564405 Agaricus bisporus Craterocolla cerasi TUB020203 274156 Craterocolla cerasi Austrogautieria sp1 OSC80139 462103 Austrogautieria sp. OSC80139 Classicula fluitans 664206 Classicula fluitans Hydropus marginellus AFTOLID1720 94186 Hydropus marginellus Hydnum repandum BB07_341 160851 Hydnum repandum Kriegeria eriophori Tubaria confragosa 494109 Tubaria confragosa Unilacryma unisporus TNS_F_38904 Stereopsis sp OKHL15544 465128 Stereopsis Conocybe filaris AFTOLID1498 624814 Conocybe filaris Trappea pinyonensis OSFAHF530 30568 Trappea pinyonensis Kuehneola uredinis 184983 Kuehneola Gloeodontia discolor 1080443 Gloeodontia Campanella sp MCA1689NN 831970 Campanella (genus in Opisthokonta) Punctulariopsis obducens 38460 Punctulariopsis Porotheleum fimbriatum AFTOLID1725 83319 Porotheleum fimbriatum Leccinum extremiorientale HKAS63635 455400 Leccinum extremiorientale Sterigmatomyces halophilus CBS4609T 293763 Sterigmatomyces halophilus Flammula alnicola Marasmius oreades ZRL2015086 351351 Marasmius oreades Leotia lubrica AFTOLID1 339442 Leotia lubrica Microstroma juglandis FO_39211 124568 Microstroma juglandis Melanoleuca communis ZRL20151882 5306545 Melanoleuca communis Aseroe rubra 122632 4100307 Aseroe rubra Ustilago tritici CBS669_70 514513 Ustilago tritici Boletopsis leucomelaena PBM2678 455404 Boletopsis leucomelaena Inonotus linteus Inonotus linteus MUCL47139 Tubaria vinicolor AFTOLID499 926447 Tubaria vinicolor Cintractia limitata HAJB_10488 495215 Cintractia limitata Cuphophyllus basidiosus AFTOLID1759 865677 Cuphophyllus basidiosus Flammulina velutipes AFTOLID558 189792 Flammulina velutipes Cystofilobasidium capitatum CBS6358 90112 Cystofilobasidium capitatum Melampsora lini Pleurotus tuberregium 581152 Pleurotus Pleurotus tuber-regium Cyrenella elegans CBS274_82 947909 Cyrenella elegans Mutinus elegans 107657 354052 Mutinus elegans Podoserpula pusio 125091 Podoserpula Irpex lacteus DO_421951208 60033 Irpex lacteus Phanerochaete chrysosporium Phanerochaete chrysosporium FPL5175 Beenakia fricta 2083 432905 Beenakia fricta Pholiota spumosa ZRL20151729 326480 Pholiota spumosa Pleurotus pulmonarius ZRL20151671 17230 Pleurotus pulmonarius Aureoboletus thibetanus HKAS76655 821619 Aureoboletus thibetanus Byssoporia terrestris Hjm18172 429079 Byssoporia terrestris Gymnopilus spectabilis Mapped from TreeBASE schema using org.cipres.treebase.domain.nexus.nexml.NexmlTreeBlockWriter@56ccd254 $Rev$ ot:undefined Maximum Clade Credibility Tn16776440 Tr106951_ROOT false Species Tree 534 Unrated Single true true true true true true true true true true true true true true true true true true true true true false true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true false true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true