pythonVersion
2.7.15+
pythonImplementation
CPython
Amphibians
\b\s+(\S*)$
false
Source data for tree(s) 'tree1'
tree1
otu147
otu151
otu195
otu201
otu247
otu269
otu148
otu150
^ot:comment
^ot:nodeLabelMode
^ot:nodeLabelTimeUnit
^ot:reasonsToExcludeFromSynthesis
^ot:ottId
otu163
otu164
otu165
otu167
otu168
otu169
otu170
otu173
otu17
otu18
otu19
otu20
otu171
otu172
otu174
otu175
otu196
otu197
otu199
otu200
otu204
otu205
otu223
otu225
otu237
otu238
otu263
otu264
otu265
otu27
otu28
otu273
otu274
otu275
otu276
otu277
otu279
otu280
otu281
^ot:branchLengthTimeUnit
__Supermatrix phylogeny using species tree constraint__
_Supermatrix construction_: We created a supermatrix that included all available published sequence data of Afrobatrachian frogs, using five nuclear loci included in our captures (FICD, KIAA2013, POMC, TYR, and RAG-1) and the mtDNA marker 16S. Nuclear loci were aligned using MUSCLE (Edgar 2004), and 16S sequences were aligned using MAFFT with the E-INS-i strategy (Katoh et al. 2002; Katoh et al. 2005). The final concatenated alignment consisted of 283 taxa and 3,991 bp, with 36% total missing data.
_Phylogenetic methods_: We reconstructed the phylogenetic relationships of Afrobatrachian frogs from the five nuclear gene and mtDNA data set using a maximum likelihood (ML) approach in RAXML v8 (Stamatakis 2014). To preserve the relationships inferred with our species tree analyses of sequence capture loci, the sequence capture hyperoliid species tree containing 153 taxa (143 ingroup and 10 outgroup taxa) was used as a partial constraint tree for the ML analysis of the 283-taxon alignment of six loci.
rcballer
RaynaCBell
1062201
Microhyloidea
ot_1969
Daniel M Portik, Rayna C Bell, David C Blackburn, Aaron M Bauer, Christopher D Barratt, William R Branch, Marius Burger, Alan Channing, Timothy J Colston, Werner Conradie, J Maximilian Dehling, Robert C Drewes, Raffael Ernst, Eli Greenbaum, Václav Gvoždík, James Harvey, Annika Hillers, Mareike Hirschfeld, Gregory FM Jongsma, Jos Kielgast, Marcel T Kouete, Lucinda P Lawson, Adam D Leaché, Simon P Loader, Stefan Lötters, Arie Van Der Meijden, Michele Menegon, Susanne Müller, Zoltán T Nagy, Caleb Ofori-Boateng, Annemarie Ohler, Theodore J Papenfuss, Daniela Rößler, Ulrich Sinsch, Mark-Oliver Rödel, Michael Veith, Jens Vindum, Ange-Ghislain Zassi-Boulou, Jimmy A McGuire. (2019). Sexual Dichromatism Drives Diversification within a Major Radiation of African Amphibians. Systematic Biology, 68(6), 859–875. doi:10.1093/sysbio/syz023
2019
Phrynomantis microps
980664
Phrynomantis microps
Breviceps macrops
442319
Breviceps macrops
Arthroleptis nikeae
362850
Arthroleptis nikeae
Arthroleptis tanneri
628807
Arthroleptis tanneri
Arthroleptis francei
362853
Arthroleptis francei
Arthroleptis stenodactylus
628832
Arthroleptis stenodactylus
Arthroleptis perreti
1090640
Arthroleptis perreti
Arthroleptis palava
1090643
Arthroleptis palava
Arthroleptis variabilis
968555
Arthroleptis variabilis
Arthroleptis adelphus
362846
Arthroleptis adelphus
Arthroleptis brevipes
745286
Arthroleptis brevipes
Arthroleptis bioko
616092
Arthroleptis bioko
Breviceps namaquensis
836560
Breviceps namaquensis
Arthroleptis poecilonotus
257572
Arthroleptis poecilonotus
Acanthixalus spinosus
532105
Acanthixalus spinosus
Acanthixalus sonjae
738552
Acanthixalus sonjae
Semnodactylus wealii
369244
Semnodactylus wealii
Paracassina obscura
3619072
Paracassina obscura
Paracassina kounhiensis
3619079
Paracassina kounhiensis
Phlyctimantis maculata
7070465
Phlyctimantis maculatus
Phlyctimantis keithae
3618963
Phlyctimantis keithae
Phlyctimantis verrucosus
750032
Phlyctimantis verrucosus
Phlyctimantis boulengeri
3618962
Phlyctimantis boulengeri
Breviceps branchi
836563
Breviceps branchi
Phlyctimantis leonardi
462982
Phlyctimantis leonardi
Kassina kuvangensis
3618955
Kassina kuvangensis
Kassina fusca
3618949
Kassina fusca
Kassina lamottei
3618950
Kassina lamottei
Kassina schioetzi
3618953
Kassina schioetzi
Kassina cassinoides
3618957
Kassina cassinoides
Kassina senegalensis
535805
Kassina senegalensis
Kassina decorata
3618946
Kassina decorata
Kassina maculosa
3618956
Kassina maculosa
Kassina arboricola
3618954
Kassina arboricola
Spelaeophryne methneri
111202
Spelaeophryne methneri
Kassina cochranae
3618952
Kassina cochranae
Opisthothylax immaculatus
645884
Opisthothylax immaculatus
Afrixalus enseticola
3618974
Afrixalus enseticola
Tachycnemis seychellensis
750023
Tachycnemis seychellensis
Heterixalus madagascariensis
709700
Heterixalus madagascariensis
Heterixalus boettgeri
770752
Heterixalus boettgeri
Heterixalus alboguttatus
635557
Heterixalus alboguttatus
Heterixalus punctatus
482610
Heterixalus punctatus
Heterixalus andrakata
710650
Heterixalus andrakata
Heterixalus tricolor
618280
Heterixalus tricolor
Probreviceps loveridgei
348127
Probreviceps loveridgei
Heterixalus variabilis
566318
Heterixalus variabilis
Heterixalus luteostriatus
135514
Heterixalus luteostriatus
Heterixalus betsileo
186161
Heterixalus betsileo
Heterixalus carbonei
49549
Heterixalus carbonei
Heterixalus rutenbergi
482601
Heterixalus rutenbergi
Afrixalus vibekensis
3618984
Afrixalus vibekensis
Afrixalus weidholzi
3618973
Afrixalus weidholzi
Afrixalus lacustris
Afrixalus dorsimaculatus 1
3618976
Afrixalus dorsimaculatus
Afrixalus morerei
3618977
Afrixalus morerei
Probreviceps uluguruensis
111210
Probreviceps uluguruensis
Afrixalus dorsimaculatus 2
3618976
Afrixalus dorsimaculatus
Afrixalus knysae
Afrixalus spinifrons
3618970
Afrixalus spinifrons
Afrixalus delicatus
56877
Afrixalus delicatus
Afrixalus brachycnemis
3618987
Afrixalus brachycnemis
Afrixalus stuhlmanni
7070431
Afrixalus stuhlmanni
Afrixalus sylvaticus
7070432
Afrixalus sylvaticus
Afrixalus laevis
520123
Afrixalus laevis
Afrixalus lacteus
3618980
Afrixalus lacteus
Afrixalus fornasini
750019
Afrixalus fornasini
Probreviceps durirostris
734040
Probreviceps durirostris
Afrixalus equatorialis
3618986
Afrixalus equatorialis
Afrixalus wittei
3618982
Afrixalus wittei
Afrixalus osorioi
3618979
Afrixalus osorioi
Afrixalus paradorsalis 3
362841
Afrixalus paradorsalis
Afrixalus paradorsalis 2
362841
Afrixalus paradorsalis
Afrixalus paradorsalis 1
362841
Afrixalus paradorsalis
Afrixalus nigeriensis
3618968
Afrixalus nigeriensis
Afrixalus vittiger 1
3618975
Afrixalus vittiger
Afrixalus vittiger 2
3618975
Afrixalus vittiger
Afrixalus dorsalis 3
320882
Afrixalus dorsalis
Probreviceps sp Nguru
283931
Probreviceps
Afrixalus dorsalis 1
320882
Afrixalus dorsalis
Afrixalus quadrivittatus 1
3618967
Afrixalus quadrivittatus
Afrixalus quadrivittatus 2
3618967
Afrixalus quadrivittatus
Afrixalus dorsalis 2
320882
Afrixalus dorsalis
Afrixalus fulvovittatus 2
3618983
Afrixalus fulvovittatus
Afrixalus fulvovittatus 1
3618983
Afrixalus fulvovittatus
Morerella cyanophthalma
85257
Morerella cyanophthalma
Cryptothylax greshoffii
186185
Cryptothylax greshoffii
Hyperolius semidiscus
63307
Hyperolius semidiscus
Hyperolius lupiroensis
4133661
Hyperolius lupiroensis
Probreviceps sp Rubeho
283931
Probreviceps
Hyperolius parkeri
3619065
Hyperolius parkeri
Hyperolius viridis
3619009
Hyperolius viridis
Hyperolius pusillus
510956
Hyperolius pusillus
Hyperolius benguellensis
526682
Hyperolius benguellensis
Hyperolius inyangae
4133665
Hyperolius inyangae
Hyperolius nasutus
635554
Hyperolius nasutus
Hyperolius dartevellei
4133667
Hyperolius dartevellei
Hyperolius rwandae
4133664
Hyperolius rwandae
Hyperolius friedemanni
4133662
Hyperolius friedemanni
Hyperolius howelli
4133663
Hyperolius howelli
Probreviceps sp Kigogo
283931
Probreviceps
Hyperolius acuticeps
830584
Hyperolius acuticeps
Hyperolius poweri
3619061
Hyperolius poweri
Hyperolius igbettensis
3619005
Hyperolius igbettensis
Hyperolius jacobseni
4133666
Hyperolius jacobseni
Hyperolius adspersus
978755
Hyperolius adspersus
Hyperolius pseudoargus
Hyperolius fusciventris 2
85268
Hyperolius fusciventris
Hyperolius fusciventris 1
85268
Hyperolius fusciventris
Hyperolius bolifambae
3619019
Hyperolius bolifambae
Hyperolius ocellatus 1
40418
Hyperolius ocellatus
Hemisus sudanensis
685277
Hemisus sudanensis
Probreviceps sp Udzungwa
283931
Probreviceps
Hyperolius ocellatus 2
40418
Hyperolius ocellatus
Hyperolius sp nov 1
Hyperolius camerunensis
3619006
Hyperolius camerunensis
Hyperolius riggenbachi
854672
Hyperolius riggenbachi
Hyperolius guttulatus 2
510964
Hyperolius guttulatus
Hyperolius guttulatus 1
510964
Hyperolius guttulatus
Hyperolius phantasticus
659593
Hyperolius phantasticus
Hyperolius pardalis
510961
Hyperolius pardalis
Hyperolius steindachneri
3619004
Hyperolius steindachneri
Hyperolius argus
78179
Hyperolius argus
Probreviceps rungwensis
734043
Probreviceps rungwensis
Hyperolius bocagei
3619063
Hyperolius bocagei
Hyperolius lamottei
505164
Hyperolius lamottei
Hyperolius tuberculatus
502268
Hyperolius tuberculatus
Hyperolius dintelmanni
3619027
Hyperolius dintelmanni
Hyperolius parallelus parallelus
7070450
Hyperolius parallelus parallelus
Hyperolius parallelus marginatus
3619051
Hyperolius marginatus
Hyperolius parallelus alborufus
7070449
Hyperolius parallelus alborufus
Hyperolius parallelus pyrrhodictyon
598822
Hyperolius pyrrhodictyon
Hyperolius marmoratus taeniatus
7070444
Hyperolius marmoratus taeniatus
Hyperolius marmoratus marmoratus
7070443
Hyperolius marmoratus marmoratus
Probreviceps macrodactylus
111206
Probreviceps macrodactylus
Hyperolius marmoratus swynnertoni
129571
Hyperolius swynnertoni
Hyperolius mariae
3618999
Hyperolius mariae
Hyperolius reesi
3619030
Hyperolius reesi
Hyperolius nitidulus 1
593338
Hyperolius nitidulus
Hyperolius spatzi
73599
Hyperolius spatzi
Hyperolius nitidulus 2
593338
Hyperolius nitidulus
Hyperolius viridiflavus pitmani
593345
Hyperolius viridiflavus pitmani
Hyperolius viridiflavus sp
652134
Hyperolius viridiflavus
Hyperolius viridiflavus destefanii
7070459
Hyperolius viridiflavus destefanii
Hyperolius viridiflavus variablilis
7070464
Hyperolius viridiflavus variablilis
Callulina shengena
962334
Callulina shengena
Hyperolius viridiflavus ngorongoriensis
7070460
Hyperolius viridiflavus ngorongoriensis
Hyperolius viridiflavus ommatostictus
593342
Hyperolius viridiflavus ommatostictus
Hyperolius viridiflavus pantherinus
593344
Hyperolius viridiflavus pantherinus
Hyperolius viridiflavus glandicolor
598826
Hyperolius viridiflavus glandicolor
Chlorolius koehleri
3619082
Hyperolius koehleri
Hyperolius tuberilinguis
165054
Hyperolius tuberilinguis
Hyperolius mosaicus
830587
Hyperolius mosaicus
Hyperolius endjami 2
3619043
Hyperolius endjami
Hyperolius endjami 1
3619043
Hyperolius endjami
Hyperolius cystocandicans
505158
Hyperolius cystocandicans
Callulina laphami
962328
Callulina laphami
Hyperolius jackie
4948226
Hyperolius jackie
Hyperolius discodactylus
3619022
Hyperolius discodactylus
Hyperolius lateralis
40389
Hyperolius lateralis
Hyperolius castaneus
681665
Hyperolius castaneus
Hyperolius frontalis
40421
Hyperolius frontalis
Hyperolius platyceps
3619047
Hyperolius platyceps
Hyperolius cinereus
452671
Hyperolius cinereus
Hyperolius raymondii
Hyperolius langi
3619024
Hyperolius langi
Hyperolius kuligae
3619002
Hyperolius kuligae
Callulina dawida
404211
Callulina dawida
Hyperolius ademetzi
3619015
Hyperolius ademetzi
Hyperolius tanneri
930201
Hyperolius tanneri
Hyperolius minitissimus
354708
Hyperolius minutissimus
Hyperolius burgessi
5810529
Hyperolius burgessi
Hyperolius spinigularis
930195
Hyperolius spinigularis
Hyperolius torrentis
877449
Hyperolius torrentis
Hyperolius chlorosteus
505143
Hyperolius chlorosteus
Hyperolius occidentalis
3618992
Hyperolius occidentalis
Hyperolius sylvaticus
1088575
Hyperolius sylvaticus
Hyperolius baumanni
85263
Hyperolius baumanni
Callulina kanga
973495
Callulina kanga
Hyperolius picturatus
660308
Hyperolius picturatus
Hyperolius zonatus
1014882
Hyperolius zonatus
Hyperolius bobirensis
854666
Hyperolius bobirensis
Hyperolius concolor 2
505134
Hyperolius concolor
Hyperolius concolor 1
505134
Hyperolius concolor
Hyperolius concolor 3
505134
Hyperolius concolor
Hyperolius montanus
659587
Hyperolius montanus
Hyperolius pictus
3619001
Hyperolius pictus
Hyperolius substriatus
3619039
Hyperolius substriatus
Hyperolius sp nov 2
Callulina sp lowland
51821
Callulina
Hyperolius mitchelli
354703
Hyperolius mitchelli
Hyperolius rubrovermiculatus
3619042
Hyperolius rubrovermiculatus
Hyperolius quinquevittatus
3618998
Hyperolius quinquevittatus
Hyperolius kivuensis 1
71965
Hyperolius kivuensis
Hyperolius kivuensis 3
71965
Hyperolius kivuensis
Hyperolius kivuensis 2
71965
Hyperolius kivuensis
Hyperolius balfouri 1
3619048
Hyperolius balfouri
Hyperolius balfouri 2
3619048
Hyperolius balfouri
Hyperolius veithi
854669
Hyperolius veithi
Hyperolius cinnamomeoventris 2
40386
Hyperolius cinnamomeoventris
Callulina sp Rubeho
51821
Callulina
Hyperolius cinnamomeoventris 1
40386
Hyperolius cinnamomeoventris
Hyperolius cinnamomeoventris 3
40386
Hyperolius cinnamomeoventris
Hyperolius thomensis
1035019
Hyperolius thomensis
Hyperolius molleri
1035013
Hyperolius molleri
Callulina hanseni
7666357
Callulina hanseni
Hemisus marmoratus
968537
Hemisus marmoratus
Callulina meteora
6158803
Callulina meteora
Callulina stanleyi
962331
Callulina stanleyi
Callulina kisiwamsitu
540104
Callulina kisiwamsitu
Callulina kreffti
51822
Callulina kreffti
Nyctibates corrugatus
475156
Nyctibates corrugatus
Scotobleps gabonicus
62327
Scotobleps gabonicus
Astylosternus laticephalus
4133673
Astylosternus laticephalus
Astylosternus occidentalis
3619117
Astylosternus occidentalis
Trichobatrachus robustus
780980
Trichobatrachus robustus
Astylosternus diadematus
910006
Astylosternus diadematus
Balebreviceps hillmani
348132
Balebreviceps hillmani
Astylosternus schioetzi
1028301
Astylosternus schioetzi
Astylosternus batesi
635421
Astylosternus batesi
Leptodactylodon mertensi
487654
Leptodactylodon mertensi
Leptodactylodon erythrogaster
3619127
Leptodactylodon erythrogaster
Leptodactylodon perreti
3619125
Leptodactylodon perreti
Leptodactylodon axillaris
3619128
Leptodactylodon axillaris
Leptodactylodon polyacanthus
3619129
Leptodactylodon polyacanthus
Leptodactylodon bicolor
605693
Leptodactylodon bicolor
Leptodactylodon bueanus
3619120
Leptodactylodon bueanus
Leptodactylodon ornatus
3619122
Leptodactylodon ornatus
Breviceps mossambicus
404462
Breviceps mossambicus
Leptodactylodon boulengeri
3619130
Leptodactylodon boulengeri
Leptodactylodon ventrimarmoratus
3619124
Leptodactylodon ventrimarmoratus
Leptodactylodon ovatus
3619131
Leptodactylodon ovatus
Leptopelis parkeri
3619167
Leptopelis parkeri
Leptopelis macrotis
3619169
Leptopelis macrotis
Leptopelis millsoni
707021
Leptopelis millsoni
Leptopelis rufus
3619161
Leptopelis rufus
Leptopelis argenteus
750001
Leptopelis argenteus
Leptopelis yaldeni
3619170
Leptopelis yaldeni
Leptopelis vannutellii
3619133
Leptopelis vannutellii
Breviceps adspersus
3618690
Breviceps adspersus
Leptopelis susanae
3619160
Leptopelis susanae
Leptopelis gramineus
3619166
Leptopelis gramineus
Leptopelis kivuensis
447448
Leptopelis kivuensis
Leptopelis ocellatus
3619136
Leptopelis ocellatus
Leptopelis spiritusnoctis
3619164
Leptopelis spiritusnoctis
Leptopelis viridis
3619152
Leptopelis viridis
Leptopelis aubryi
3619162
Leptopelis aubryi
Leptopelis natalensis
980655
Leptopelis natalensis
Leptopelis palmatus
1035029
Leptopelis palmatus
Leptopelis calcaratus
621
Leptopelis calcaratus
Breviceps montanus
3618685
Breviceps montanus
Leptopelis brevirostris
954728
Leptopelis brevirostris
Leptopelis notatus
3619168
Leptopelis notatus
Leptopelis modestus
980682
Leptopelis modestus
Leptopelis flavomaculatus
3619143
Leptopelis flavomaculatus
Leptopelis nordequatorialis
3619141
Leptopelis nordequatorialis
Leptopelis bocagii
917466
Leptopelis bocagii
Leptopelis vermiculatus
750011
Leptopelis vermiculatus
Leptopelis aubryioides
5926117
Leptopelis aubryioides
Leptopelis boulengeri
3619142
Leptopelis boulengeri
Leptopelis fiziensis
3619153
Leptopelis fiziensis
Breviceps fuscus
464972
Breviceps fuscus
Leptopelis karissimbensis
956255
Leptopelis karissimbensis
Cardioglossa melanogaster
635418
Cardioglossa melanogaster
Cardioglossa gracilis
1001464
Cardioglossa gracilis
Cardioglossa elegans
436870
Cardioglossa elegans
Cardioglossa leucomystax
1028307
Cardioglossa leucomystax
Cardioglossa occidentalis
436866
Cardioglossa occidentalis
Cardioglossa pulchra
282284
Cardioglossa pulchra
Cardioglossa oreas
107622
Cardioglossa oreas
Cardioglossa manengouba
963162
Cardioglossa manengouba
Cardioglossa escalerae
3619106
Cardioglossa escalerae
Breviceps gibbosus
3618684
Breviceps gibbosus
Cardioglossa trifasciata
3619110
Cardioglossa trifasciata
Cardioglossa annulata
5926115
Cardioglossa annulata
Cardioglossa nigromaculata
3619104
Cardioglossa nigromaculata
Arthroleptis schubotzi
635398
Arthroleptis schubotzi
Arthroleptis xenodactyloides
107609
Arthroleptis xenodactyloides
Arthroleptis fichika
1090647
Arthroleptis fichika
Arthroleptis sylvaticus
107603
Arthroleptis sylvaticus
Arthroleptis taeniatus
492493
Arthroleptis taeniatus
Arthroleptis reichei
107595
Arthroleptis reichei
Arthroleptis affinis
362842
Arthroleptis affinis
ot:changesCount
Maximum likelihood
node3
tree1_ROOT
false
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true