{"sha": "3f7bd72a0486fba3f756bbb61fabda2acf6c259f", "data": {"nexml": {"@about": "#study", "@generator": "Open Tree API", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xhtml": "http://www.w3.org/1999/xhtml/vocab#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "Open Tree NexSON validation", "@id": "peyotl-validator", "@name": "api.opentreeoflife.org/validate", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": [], "otherProperty": [{"name": "pythonVersion", "value": "2.7.16"}, {"name": "pythonImplementation", "value": "CPython"}]}}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0"}]}, "^ot:annotationEvents": {"annotation": [{"@dateCreated": "2021-06-17T11:31:16.407Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"autoAcceptExactMatches": false, "searchContext": {"$": "All life"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}]}, "useFuzzyMatching": false}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2021-06-17T11:31:16.407Z", "@description": "Describes external namesets merged into this study", "@id": "merged-namesets-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "MERGED_NAMESET_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"namesets": {"nameset": []}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2021-06-17T11:31:16.407Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": [{"@filename": "Hoeg2020.phy", "@size": 1063, "@type": "newick", "@url": "/curator/download/supporting_files.doc.93cb8a06119c69f7.486f6567323032302e706879.phy", "description": {"$": "Fig. 3"}, "sourceForTree": [{"$": "tree1"}]}]}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:branchLengthTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit", "^ot:reasonsToExcludeFromSynthesis"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": [], "^ot:comment": "", "^ot:curatorName": ["Christine Ewers-Saucedo"], "^ot:dataDeposit": {"@href": ""}, "^ot:focalCladeOTTTaxonName": "", "^ot:otusElementOrder": ["otus1"], "^ot:studyId": "ot_2032", "^ot:studyPublication": {"@href": "http://dx.doi.org/10.1093/zoolinnean/zlz140"}, "^ot:studyPublicationReference": "H\u00f8eg, J. T., Noever, C., Rees, D. A., Crandall, K. A., & Glenner, H. (2020). A new molecular phylogeny-based taxonomy of parasitic barnacles (Crustacea: Cirripedia: Rhizocephala). Zoological Journal of the Linnean Society, 190(2), 632\u2013653. doi:10.1093/zoolinnean/zlz140\n", "^ot:studyYear": 2020, "^ot:tag": [], "^ot:treesElementOrder": ["trees1"], "^xhtml:license": {"@href": "http://creativecommons.org/publicdomain/zero/1.0/"}, "otusById": {"otus1": {"otuById": {"otu1": {"^ot:originalLabel": "Sacculina carcini", "^ot:ottId": 664820, "^ot:ottTaxonName": "Sacculina carcini"}, "otu10": {"^ot:originalLabel": "Ptychascus barnwelli", "^ot:ottId": 2959105, "^ot:ottTaxonName": "Ptychascus barnwelli"}, "otu11": {"^ot:originalLabel": "Parthenopea subterranea", "^ot:ottId": 741744, "^ot:ottTaxonName": "Parthenopea subterranea"}, "otu12": {"^ot:originalLabel": "Polyascus planus", "^ot:ottId": 458840, "^ot:ottTaxonName": "Polyascus plana"}, "otu13": {"^ot:originalLabel": "Polyascus gregarius", "^ot:ottId": 458844, "^ot:ottTaxonName": "Polyascus gregaria"}, "otu14": {"^ot:originalLabel": "Polyascus polygeneus", "^ot:ottId": 458845, "^ot:ottTaxonName": "Polyascus polygenea"}, "otu15": {"^ot:originalLabel": "Parasacculina sinensis", "^ot:ottId": 414909, "^ot:ottTaxonName": "Sacculina sinensis"}, "otu16": {"^ot:originalLabel": "Parasacculina leptodiae", "^ot:ottId": 458842, "^ot:ottTaxonName": "Sacculina leptodiae"}, "otu17": {"^ot:originalLabel": "Parasacculina compressa", "^ot:ottId": 2958995, "^ot:ottTaxonName": "Sacculina compressa"}, "otu18": {"^ot:originalLabel": "Parasacculina oblonga", "^ot:ottId": 777759, "^ot:ottTaxonName": "Sacculina oblonga"}, "otu19": {"^ot:originalLabel": "Parasacculina yatsui", "^ot:ottId": 855396, "^ot:ottTaxonName": "Sacculina yatsui"}, "otu2": {"^ot:originalLabel": "Sacculina upogiae", "^ot:ottId": 5521185, "^ot:ottTaxonName": "Sacculina upogebiae"}, "otu20": {"^ot:originalLabel": "Parasacculina bicuspidata", "^ot:ottId": 2959031, "^ot:ottTaxonName": "Sacculina bicuspidata"}, "otu21": {"^ot:originalLabel": "Parasacculina shiinoi", "^ot:ottId": 5781936, "^ot:ottTaxonName": "Sacculina shiinoi"}, "otu22": {"^ot:originalLabel": "Chthamalophilus delagei", "^ot:ottId": 1049749, "^ot:ottTaxonName": "Chthamalophilus delagei"}, "otu23": {"^ot:originalLabel": "Boschmaella japonica", "^ot:ottId": 468105, "^ot:ottTaxonName": "Boschmaella japonica"}, "otu24": {"^ot:originalLabel": "Duplorbidae", "^ot:ottId": 2959479, "^ot:ottTaxonName": "Duplorbidae"}, "otu25": {"^ot:originalLabel": "Pirusaccus socialis", "^ot:ottId": 4678445, "^ot:ottTaxonName": "Pirusaccus socialis"}, "otu26": {"^ot:originalLabel": "Thompsonia littoralis", "^ot:ottId": 167276, "^ot:ottTaxonName": "Thompsonia littoralis"}, "otu27": {"^ot:originalLabel": "Diplothylacus sinensis", "^ot:ottId": 741748, "^ot:ottTaxonName": "Diplothylacus sinensis"}, "otu28": {"^ot:originalLabel": "Thylacoplethus magellani", "^ot:ottId": 849595, "^ot:ottTaxonName": "Thompsonia magellani"}, "otu29": {"^ot:originalLabel": "Jensia serenei", "^ot:ottId": 7115392, "^ot:ottTaxonName": "Jensia serenei"}, "otu3": {"^ot:originalLabel": "Loxothylacus panopaei", "^ot:ottId": 458843, "^ot:ottTaxonName": "Loxothylacus panopaei"}, "otu30": {"^ot:originalLabel": "Polysaccus japonicus", "^ot:ottId": 269135, "^ot:ottTaxonName": "Polysaccus japonicus"}, "otu31": {"^ot:originalLabel": "Sylon hippolytes", "^ot:ottId": 502933, "^ot:ottTaxonName": "Sylon hippolytes"}, "otu32": {"^ot:originalLabel": "Clistosaccus paguri", "^ot:ottId": 245803, "^ot:ottTaxonName": "Clistosaccus paguri"}, "otu33": {"^ot:originalLabel": "Cyphosaccus norvegicus", "^ot:ottId": 2959159, "^ot:ottTaxonName": "Cyphosaccus norvegicus"}, "otu34": {"^ot:originalLabel": "Peltogasterella sulcata", "^ot:ottId": 167279, "^ot:ottTaxonName": "Peltogasterella sulcata"}, "otu35": {"^ot:originalLabel": "Tortugaster boschmai", "^ot:ottId": 2959167, "^ot:ottTaxonName": "Tortugaster boschmai"}, "otu36": {"^ot:originalLabel": "Lernaeodiscus porcellanae", "^ot:ottId": 218054, "^ot:ottTaxonName": "Lernaeodiscus porcellanae"}, "otu37": {"^ot:originalLabel": "Lernaeodiscus ingolfi", "^ot:ottId": 2959118, "^ot:ottTaxonName": "Lernaeodiscus ingolfi"}, "otu38": {"^ot:originalLabel": "Briarosaccus auratus", "^ot:ottId": 5781959, "^ot:ottTaxonName": "Briarosaccus auratum"}, "otu39": {"^ot:originalLabel": "Peltogaster paguri", "^ot:ottId": 971344, "^ot:ottTaxonName": "Peltogaster paguri"}, "otu4": {"^ot:originalLabel": "Loxothylacus texanus", "^ot:ottId": 579399, "^ot:ottTaxonName": "Loxothylacus texanus"}, "otu40": {"^ot:originalLabel": "Peltogaster curvata", "^ot:ottId": 2959139, "^ot:ottTaxonName": "Peltogaster curvata"}, "otu41": {"^ot:originalLabel": "Galatheascus striatus", "^ot:ottId": 2959148, "^ot:ottTaxonName": "Galatheascus striatus"}, "otu42": {"^ot:originalLabel": "Septosaccus rodriguezii", "^ot:ottId": 167281, "^ot:ottTaxonName": "Septosaccus rodriguezii"}, "otu43": {"^ot:originalLabel": "Paratriangulus galatheae", "^ot:ottId": 2959116, "^ot:ottTaxonName": "Triangulus galatheae"}, "otu44": {"^ot:originalLabel": "Mycetomorpha vancouverensis", "^ot:ottId": 2959339, "^ot:ottTaxonName": "Mycetomorpha vancouverensis"}, "otu45": {"^ot:originalLabel": "Triangulus munidae", "^ot:ottId": 2959125, "^ot:ottTaxonName": "Triangulus munidae"}, "otu46": {"^ot:originalLabel": "Ibla cumingi", "^ot:ottId": 143508, "^ot:ottTaxonName": "Ibla cumingi"}, "otu5": {"^ot:originalLabel": "Heterosaccus californicus", "^ot:ottId": 251974, "^ot:ottTaxonName": "Heterosaccus californicus"}, "otu6": {"^ot:originalLabel": "Heterosaccus lunatus", "^ot:ottId": 859010, "^ot:ottTaxonName": "Heterosaccus lunatus"}, "otu7": {"^ot:originalLabel": "Heterosaccus dollfusi", "^ot:ottId": 791782, "^ot:ottTaxonName": "Heterosaccus dollfusi"}, "otu8": {"^ot:originalLabel": "Sesarmaxenos gedehensis", "^ot:ottId": 2959111, "^ot:ottTaxonName": "Sesarmaxenos gedehensis"}, "otu9": {"^ot:originalLabel": "Sacculina insueta", "^ot:ottId": 2959051, "^ot:ottTaxonName": "Sacculina insueta"}}}}, "treesById": {"trees1": {"@otus": "otus1", "^ot:treeElementOrder": ["tree1"], "treeById": {"tree1": {"@label": "Fig. 3 (composite phylogeny)", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:undefined", "^ot:curatedType": "", "^ot:inGroupClade": "node2", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:reasonsToExcludeFromSynthesis": [], "^ot:rootNodeId": "node1", "^ot:specifiedRoot": "node1", "^ot:tag": [], "^ot:unrootedTree": false, "edgeBySourceId": {"node1": {"edge1": {"@source": "node1", "@target": "node2"}, "edge85": {"@source": "node1", "@target": "node86"}}, "node11": {"edge11": {"@source": "node11", "@target": "node12"}, "edge12": {"@source": "node11", "@target": "node13"}}, "node13": {"edge13": {"@source": "node13", "@target": "node14"}, "edge14": {"@source": "node13", "@target": "node15"}}, "node16": {"edge16": {"@source": "node16", "@target": "node17"}, "edge19": {"@source": "node16", "@target": "node20"}}, "node17": {"edge17": {"@source": "node17", "@target": "node18"}, "edge18": {"@source": "node17", "@target": "node19"}}, "node2": {"edge2": {"@source": "node2", "@target": "node3"}, "edge84": {"@source": "node2", "@target": "node85"}}, "node20": {"edge20": {"@source": "node20", "@target": "node21"}, "edge21": {"@source": "node20", "@target": "node22"}}, "node22": {"edge22": {"@source": "node22", "@target": "node23"}, "edge23": {"@source": "node22", "@target": "node24"}}, "node26": {"edge26": {"@source": "node26", "@target": "node27"}, "edge44": {"@source": "node26", "@target": "node45"}}, "node27": {"edge27": {"@source": "node27", "@target": "node28"}, "edge42": {"@source": "node27", "@target": "node43"}, "edge43": {"@source": "node27", "@target": "node44"}}, "node28": {"edge28": {"@source": "node28", "@target": "node29"}, "edge33": {"@source": "node28", "@target": "node34"}}, "node29": {"edge29": {"@source": "node29", "@target": "node30"}, "edge32": {"@source": "node29", "@target": "node33"}}, "node3": {"edge3": {"@source": "node3", "@target": "node4"}, "edge68": {"@source": "node3", "@target": "node69"}}, "node30": {"edge30": {"@source": "node30", "@target": "node31"}, "edge31": {"@source": "node30", "@target": "node32"}}, "node34": {"edge34": {"@source": "node34", "@target": "node35"}, "edge35": {"@source": "node34", "@target": "node36"}}, "node36": {"edge36": {"@source": "node36", "@target": "node37"}, "edge37": {"@source": "node36", "@target": "node38"}}, "node38": {"edge38": {"@source": "node38", "@target": "node39"}, "edge41": {"@source": "node38", "@target": "node42"}}, "node39": {"edge39": {"@source": "node39", "@target": "node40"}, "edge40": {"@source": "node39", "@target": "node41"}}, "node4": {"edge25": {"@source": "node4", "@target": "node26"}, "edge4": {"@source": "node4", "@target": "node5"}, "edge65": {"@source": "node4", "@target": "node66"}}, "node45": {"edge45": {"@source": "node45", "@target": "node46"}, "edge52": {"@source": "node45", "@target": "node53"}}, "node46": {"edge46": {"@source": "node46", "@target": "node47"}, "edge51": {"@source": "node46", "@target": "node52"}}, "node47": {"edge47": {"@source": "node47", "@target": "node48"}, "edge50": {"@source": "node47", "@target": "node51"}}, "node48": {"edge48": {"@source": "node48", "@target": "node49"}, "edge49": {"@source": "node48", "@target": "node50"}}, "node5": {"edge24": {"@source": "node5", "@target": "node25"}, "edge5": {"@source": "node5", "@target": "node6"}}, "node53": {"edge53": {"@source": "node53", "@target": "node54"}, "edge62": {"@source": "node53", "@target": "node63"}}, "node54": {"edge54": {"@source": "node54", "@target": "node55"}, "edge61": {"@source": "node54", "@target": "node62"}}, "node55": {"edge55": {"@source": "node55", "@target": "node56"}, "edge60": {"@source": "node55", "@target": "node61"}}, "node56": {"edge56": {"@source": "node56", "@target": "node57"}, "edge57": {"@source": "node56", "@target": "node58"}}, "node58": {"edge58": {"@source": "node58", "@target": "node59"}, "edge59": {"@source": "node58", "@target": "node60"}}, "node6": {"edge15": {"@source": "node6", "@target": "node16"}, "edge6": {"@source": "node6", "@target": "node7"}}, "node63": {"edge63": {"@source": "node63", "@target": "node64"}, "edge64": {"@source": "node63", "@target": "node65"}}, "node66": {"edge66": {"@source": "node66", "@target": "node67"}, "edge67": {"@source": "node66", "@target": "node68"}}, "node69": {"edge69": {"@source": "node69", "@target": "node70"}, "edge80": {"@source": "node69", "@target": "node81"}, "edge83": {"@source": "node69", "@target": "node84"}}, "node7": {"edge7": {"@source": "node7", "@target": "node8"}, "edge8": {"@source": "node7", "@target": "node9"}}, "node70": {"edge70": {"@source": "node70", "@target": "node71"}, "edge75": {"@source": "node70", "@target": "node76"}, "edge76": {"@source": "node70", "@target": "node77"}, "edge79": {"@source": "node70", "@target": "node80"}}, "node71": {"edge71": {"@source": "node71", "@target": "node72"}, "edge72": {"@source": "node71", "@target": "node73"}}, "node73": {"edge73": {"@source": "node73", "@target": "node74"}, "edge74": {"@source": "node73", "@target": "node75"}}, "node77": {"edge77": {"@source": "node77", "@target": "node78"}, "edge78": {"@source": "node77", "@target": "node79"}}, "node81": {"edge81": {"@source": "node81", "@target": "node82"}, "edge82": {"@source": "node81", "@target": "node83"}}, "node9": {"edge10": {"@source": "node9", "@target": "node11"}, "edge9": {"@source": "node9", "@target": "node10"}}}, "nodeById": {"node1": {"@root": true}, "node10": {"@otu": "otu2"}, "node11": {}, "node12": {"@otu": "otu3"}, "node13": {}, "node14": {"@otu": "otu4"}, "node15": {"@otu": "otu5"}, "node16": {}, "node17": {}, "node18": {"@otu": "otu6"}, "node19": {"@otu": "otu7"}, "node2": {}, "node20": {}, "node21": {"@otu": "otu8"}, "node22": {}, "node23": {"@otu": "otu9"}, "node24": {"@otu": "otu10"}, "node25": {"@otu": "otu11"}, "node26": {}, "node27": {}, "node28": {}, "node29": {}, "node3": {}, "node30": {}, "node31": {"@otu": "otu12"}, "node32": {"@otu": "otu13"}, "node33": {"@otu": "otu14"}, "node34": {}, "node35": {"@otu": "otu15"}, "node36": {}, "node37": {"@otu": "otu16"}, "node38": {}, "node39": {}, "node4": {}, "node40": {"@otu": "otu17"}, "node41": {"@otu": "otu18"}, "node42": {"@otu": "otu19"}, "node43": {"@otu": "otu20"}, "node44": {"@otu": "otu21"}, "node45": {}, "node46": {}, "node47": {}, "node48": {}, "node49": {"@otu": "otu22"}, "node5": {}, "node50": {"@otu": "otu23"}, "node51": {"@otu": "otu24"}, "node52": {"@otu": "otu25"}, "node53": {}, "node54": {}, "node55": {}, "node56": {}, "node57": {"@otu": "otu26"}, "node58": {}, "node59": {"@otu": "otu27"}, "node6": {}, "node60": {"@otu": "otu28"}, "node61": {"@otu": "otu29"}, "node62": {"@otu": "otu30"}, "node63": {}, "node64": {"@otu": "otu31"}, "node65": {"@otu": "otu32"}, "node66": {}, "node67": {"@otu": "otu33"}, "node68": {"@otu": "otu34"}, "node69": {}, "node7": {}, "node70": {}, "node71": {}, "node72": {"@otu": "otu35"}, "node73": {}, "node74": {"@otu": "otu36"}, "node75": {"@otu": "otu37"}, "node76": {"@otu": "otu38"}, "node77": {}, "node78": {"@otu": "otu39"}, "node79": {"@otu": "otu40"}, "node8": {"@otu": "otu1"}, "node80": {"@otu": "otu41"}, "node81": {}, "node82": {"@otu": "otu42"}, "node83": {"@otu": "otu43"}, "node84": {"@otu": "otu44"}, "node85": {"@otu": "otu45"}, "node86": {"@otu": "otu46"}, "node9": {}}}}}}}}, "branch2sha": {"master": "3f7bd72a0486fba3f756bbb61fabda2acf6c259f"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "5e921d850d8aea221007155acd9bdfed73fe3652", "author_name": "Christine Ewers-Saucedo", "author_email": "ewers.christine@gmail.com", "date": "Thu, 17 Jun 2021 11:41:33 +0000", "date_ISO_8601": "2021-06-17 11:41:33 +0000", "relative_date": "4 years, 11 months ago", "message_subject": "Added tree", "message_body": "changed study year\n\n(Update document 'ot_2032' via OpenTree API)"}, {"id": "b72e15589db7b10d91ce8f96f132b9f49d4f250a", "author_name": "Christine Ewers-Saucedo", "author_email": "ewers.christine@gmail.com", "date": "Thu, 17 Jun 2021 11:40:27 +0000", "date_ISO_8601": "2021-06-17 11:40:27 +0000", "relative_date": "4 years, 11 months ago", "message_subject": "Added tree", "message_body": "(Update document 'ot_2032' via OpenTree API)"}, {"id": "d2728fae7f10f64e2add86d5dc64b002987d6da1", "author_name": "Christine Ewers-Saucedo", "author_email": "ewers.christine@gmail.com", "date": "Thu, 17 Jun 2021 11:31:14 +0000", "date_ISO_8601": "2021-06-17 11:31:14 +0000", "relative_date": "4 years, 11 months ago", "message_subject": "Update document 'ot_2032' via OpenTree API"}]}