pythonVersion
2.7.16
pythonImplementation
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Birds
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^(\S*\s+\S*).*
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Source data for tree(s) 'tree1'
tree1
Source data for tree(s) 'tree2'
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Source data for tree(s) 'tree3'
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The files associated with this dataset are licensed under a Creative Commons Attribution 4.0 International license.
Randy Posada
eliotmiller
Emily Jane McTavish
837585
Galliformes
ot_2072
Chen, D., Hosner, P. A., Dittmann, D. L., O’Neill, J. P., Birks, S. M., Braun, E. L., & Kimball, R. T. (2021). Divergence time estimation of Galliformes based on the best gene shopping scheme of ultraconserved elements. BMC Ecology and Evolution, 21(1). https://doi.org/10.1186/s12862-021-01935-1
2021
Apteryx australis genome SAMEA
241834
Apteryx australis
Alectura lathami UWBM 55907 T
570956
Alectura lathami
Polyplectron napoleonis RTK485
352746
Polyplectron napoleonis
Polyplectron malacense RTK488
580471
Polyplectron malacense
Polyplectron germaini RTK486 T
1058436
Polyplectron germaini
Polyplectron bicalcaratum RTK4
102705
Polyplectron bicalcaratum
Polyplectron chalcurum RTK484
110936
Polyplectron chalcurum
Polyplectron inopinatum RTK487
658122
Polyplectron inopinatum
Dendroperdix sephanea FMHN 484
55595
Dendroperdix sephaena
Francolinus francolinus RTK413
676796
Francolinus francolinus
Scleroptila afra LSUMZ B34277
681156
Scleroptila afra
Peliperdix coqui ZMUC 113945 T
676785
Francolinus coqui
Aepypodius arfakianus ANWC B26
352749
Aepypodius arfakianus
Bambusicola thoracicus RTK389
521334
Bambusicola thoracicus
Gallus varius RTK438 T
153572
Gallus varius
Gallus gallus Genome SAMN02981
153563
Gallus gallus
Gallus lafayettii RTK432 T
153554
Gallus lafayetii
Gallus sonneratii RTK433 T
153560
Gallus sonneratii
Tetraogallus himalayensis FLMN
849558
Tetraogallus himalayensis
Tetraogallus altaicus UWBM 756
1033589
Tetraogallus altaicus
Alectoris rufa RTK384 T
51360
Alectoris rufa
Alectoris chukar RTK383 T
51358
Alectoris chukar
Perdicula erythrorhyncha LSUMZ
3596063
Perdicula erythrorhyncha
Penelopina nigra UWBM 70138 T
80424
Penelopina nigra
Pternistis ahantensis LSUMZ B4
3596042
Pternistis ahantensis
Pternistis bicalcaratus LSUMZ
681145
Francolinus bicalcaratus
Pternistis swainsonii UWBM 531
55577
Francolinus swainsonii
Pternistis leucoscepus FLMNH 4
914709
Francolinus leucoscepus
Pternistis afer FLMNH 46699 T
676791
Francolinus afer
Ammoperdix heyi LSUMZ B20815 T
124997
Ammoperdix heyi
Coturnix ypsilophora ANSP 2296
520554
Synoicus ypsilophorus
Anurophasis monorthonyx YPM 73
3596096
Anurophasis monorthonyx
Excalfactoria adansonii FMNH 4
3596045
Synoicus adansonii
Excalfactoria chinensis RTK413
144486
Coturnix chinensis
Chamaepetes goudotii KU 16739
488154
Chamaepetes goudotii
Margaroperdix madagarensis FMN
681154
Margaroperdix madagarensis
Coturnix japonica YPM 140056 U
803622
Coturnix japonica
Coturnix afra FMNH 467848 UQB
1098760
Coturnix coturnix
Coturnix pectoralis UWBM 57615
602029
Coturnix pectoralis
Coturnix delegorguei ZMUC 1364
1098762
Coturnix delegorguei
Coturnix coromandelica FMNH 42
3596047
Coturnix coromandelica
Oxyura jamaicensis FMNH 397634 T
88378
Oxyura jamaicensis
Penelope pileata USNM 572502 T
1024688
Penelope pileata
Anas platyrhynchos Genome SAMN00011637
765167
Anas platyrhynchos
Struthio camelus genome SAMN02316164
647692
Struthio camelus
Apteryx australis genome SAMEA2560515
241834
Apteryx australis
Macrocephalon maleo AMNH DOT11013 T
750781
Macrocephalon maleo
Megapodius layardi UWBM 90539 T
227314
Megapodius layardi
Tallegalla fuscirostris KU 7404 T
176333
Talegalla fuscirostris
Aepypodius arfakianus ANWC B26789 T
352749
Aepypodius arfakianus
Aburria aburri LSUMZ B27864 T
963344
Aburria aburri
Guttera pucherani LSUMZ B20771 T
684048
Guttera pucherani
Ithaginis cruentus FMNH 423572 UQ
979426
Ithaginis cruentus
Tetraophasis obscurus FMNH 109173 T
438396
Tetraophasis obscurus
Pipile cumanensis B7500 T
157739
Pipile cumanensis
Rhizothera longirostris YPM 62670 UQ
781248
Rhizothera longirostris
Rhizothera longirostris YPM 042099 UQ
781248
Rhizothera longirostris
Meleagris ocellata FLMNH 45111 T
446490
Meleagris ocellata
Meleagris gallopavo Genome SAMN02981253
446482
Meleagris gallopavo
Tetrastes bonasia ZMUC 139306 T
259105
Tetrastes bonasia
Pipile jacutinga YPM 80237 UQB
1014142
Pipile jacutinga
Falcipennis falcipennis UWBM 56980 T
55929
Falcipennis falcipennis
Tetrao urogalloides UWBM 47363 UQB
5925680
Tetrao urogalloides
Lyrurus mlokosiewiczi UWBM 64762 T
168727
Lyrurus mlokosiewiczi
Falcipennis canadensis FLMNH 45718 T
55937
Falcipennis canadensis
Tympanuchus phasianellus RTK533 T
979422
Tympanuchus phasianellus
Tympanuchus cupido FLMNH 46137 T
728073
Tympanuchus cupido
Dendragapus fuliginosus LSUMZ B61919 UQB
754431
Dendragapus fuliginosus
Centrocercus urophasianus FLMNH 47008 T
728077
Centrocercus urophasianus
Oreophasis derbianus DZ HGB2 T
488145
Oreophasis derbianus
Syrmaticus soemmerringii RTK497 T
572172
Syrmaticus soemmerringii
Crossoptilon crossoptilon RTK419 T
352760
Crossoptilon crossoptilon
Ortalis vetula RTK476 T
109882
Ortalis vetula
Chrysolophus amherstiae RTK409 T
943883
Chrysolophus amherstiae
Rheinardia ocellata FMNH 105281 T
727334
Rheinardia ocellata
Argusianus argus LSUMZ B13314 T
521339
Argusianus argus
Struthio camelus genome SAMN02
647692
Struthio camelus
Crax rubra LSUMZ B14200 T
132829
Crax rubra
Tropicoperdix chloropus KU 25432 T
3596057
Tropicoperdix chloropus
Haematortyx sanguiniceps LSUMZ B52646 T
401527
Haematortyx sanguiniceps
Galloperdix spadicea LSUMZ 39646 T
3596069
Galloperdix spadicea
Polyplectron napoleonis RTK485 T
352746
Polyplectron napoleonis
Polyplectron malacense RTK488 T
580471
Polyplectron malacense
Polyplectron bicalcaratum RTK481 T
102705
Polyplectron bicalcaratum
Crax daubentoni FLMNH 45536 T
654723
Crax daubentoni
Polyplectron inopinatum RTK487 T
658122
Polyplectron inopinatum
Polyplectron chalcurum RTK484 T
110936
Polyplectron chalcurum
Tetraogallus altaicus UWBM 75676 T
1033589
Tetraogallus altaicus
Tetraogallus himalayensis FLMNH B26339 T
849558
Tetraogallus himalayensis
Margaroperdix madagarensis FMNH384730 T
681154
Margaroperdix madagarensis
Coturnix pectoralis UWBM 57615 UQB
602029
Coturnix pectoralis
Coturnix delegorguei ZMUC 136472 UQB
1098762
Coturnix delegorguei
Coturnix coromandelica FMNH 423162 UQB
3596047
Coturnix coromandelica
Crax globulosa FLMNH 45537 T
654700
Crax globulosa
Coturnix japonica YPM 140056 UQB
803622
Coturnix japonica
Excalfactoria chinensis RTK413 T
144486
Coturnix chinensis
Excalfactoria adansonii FMNH 423163 UQB
3596045
Synoicus adansonii
Coturnix ypsilophora ANSP 22960 UQB
520554
Synoicus ypsilophorus
Anurophasis monorthonyx YPM 73050 UQB
3596096
Anurophasis monorthonyx
Pternistis ahantensis LSUMZ B45279 T
3596042
Pternistis ahantensis
Pternistis leucoscepus FLMNH 45712 T
914709
Francolinus leucoscepus
Pternistis swainsonii UWBM 53121 T
55577
Francolinus swainsonii
Pternistis bicalcaratus LSUMZ B39312 T
681145
Francolinus bicalcaratus
Pauxi pauxi LSUMZ B26971 T
1014138
Pauxi pauxi
Perdicula erythrorhyncha LSUMZ 51339 T
3596063
Perdicula erythrorhyncha
Francolinus francolinus RTK413 T
676796
Francolinus francolinus
Dendroperdix sephanea FMHN 484654 T
55595
Dendroperdix sephaena
Scleroptila afra LSUMZ B34277 T
681156
Scleroptila afra
Bambusicola thoracicus RTK389 T
521334
Bambusicola thoracicus
Gallus gallus Genome SAMN02981218
153563
Gallus gallus
Nothocrax urumutum LSUMZ B1013
488148
Nothocrax urumutum
Arborophila rufogularis LSUMZ B51357 T
74933
Arborophila rufogularis
Caloperdix oculeus LSUMZ B20715 T
136466
Caloperdix oculeus
Rollulus rouloul LSUMZ B24971 T
352755
Rollulus rouloul
Melanoperdix niger FMNH 405025 T
3596095
Melanoperdix niger
Xenoperdix udzungwensis ZMUC 114233 T
54195
Xenoperdix udzungwensis
Ptilopachus petrosus FMNH B45101 T
867023
Ptilopachus petrosus
Rhynchortyx cinctus LSUMZ B30000 T
3596005
Rhynchortyx cinctus
Mitu salvini FMNH 410793 UQB
786420
Mitu salvini
Dactylortyx thoracicus FMNH 433981 T
3596014
Dactylortyx thoracicus
Odontophorus leucolaemus RTK470 T
594190
Odontophorus leucolaemus
Dendrortyx macroura UWBM 113664 T
3596009
Dendrortyx macroura
Colinus virginianus Genome SAMN00010210
204709
Colinus virginianus
Callipepla californica RTK391 T
340882
Callipepla californica
Philortyx fasciatus OMNH 19137 T
3596012
Philortyx fasciatus
Acryllium vulturinum RTK534 T
684040
Acryllium vulturinum
Nothocrax urumutum LSUMZ B10132 T
488148
Nothocrax urumutum
Chamaepetes goudotii KU 16739 T
488154
Chamaepetes goudotii
Guttera pucherani LSUMZ B20771
684048
Guttera pucherani
Agelastes niger FMNH 433377 T
3596015
Agelastes niger
Numida meleagris RTK466 T
684046
Numida meleagris
Anas platyrhynchos Genome SAMN
765167
Anas platyrhynchos
Ptilopachus petrosus FMNH B451
867023
Ptilopachus petrosus
Rhynchortyx cinctus LSUMZ B300
3596005
Rhynchortyx cinctus
Cyrtonyx montezumae RTK420 T
204716
Cyrtonyx montezumae
Odontophorus leucolaemus RTK47
594190
Odontophorus leucolaemus
Dactylortyx thoracicus FMNH 43
3596014
Dactylortyx thoracicus
Oreortyx pictus RTK474 T
676779
Oreortyx pictus
Dendrortyx macroura UWBM 11366
3596009
Dendrortyx macroura
Philortyx fasciatus OMNH 19137
3596012
Philortyx fasciatus
Colinus virginianus Genome SAM
204709
Colinus virginianus
Callipepla californica RTK391
340882
Callipepla californica
Oxyura jamaicensis FMNH 397634
88378
Oxyura jamaicensis
Callipepla douglasi RTK392 T
340885
Callipepla douglasii
Callipepla squamata RTK393 T
728092
Callipepla squamata
Xenoperdix udzungwensis ZMUC 1
54195
Xenoperdix udzungwensis
Arborophila rufogularis LSUMZ
74933
Arborophila rufogularis
Arborophila torqueola TC257 T
991317
Arborophila torqueola
Caloperdix oculeus LSUMZ B2071
136466
Caloperdix oculeus
Melanoperdix niger FMNH 405025
3596095
Melanoperdix niger
Rollulus rouloul LSUMZ B24971
352755
Rollulus rouloul
Lerwa lerwa FMNH 424697 T
3596087
Lerwa lerwa
Ithaginis cruentus FMNH 423572
979426
Ithaginis cruentus
Macrocephalon maleo AMNH DOT11
750781
Macrocephalon maleo
Lophophorus impejanus RTK484 T
624442
Lophophorus impejanus
Tetraophasis obscurus FMNH 109
438396
Tetraophasis obscurus
Tragopan blythii RTK502 T
352751
Tragopan blythii
Tragopan satyra RTK504 T
51354
Tragopan satyra
Tragopan temminckii RTK527 T
51356
Tragopan temminckii
Tragopan caboti RTK503 T
250898
Tragopan caboti
Rhizothera longirostris YPM 62
781248
Rhizothera longirostris
Rhizothera longirostris YPM 04
781248
Rhizothera longirostris
Pucrasia macrolopha RTK490 T
572162
Pucrasia macrolopha
Meleagris ocellata FLMNH 45111
446490
Meleagris ocellata
Megapodius layardi UWBM 90539
227314
Megapodius layardi
Meleagris gallopavo Genome SAM
446482
Meleagris gallopavo
Bonasa umbellus RTK390 T
728082
Bonasa umbellus
Tetrastes bonasia ZMUC 139306
259105
Tetrastes bonasia
Centrocercus urophasianus FLMN
728077
Centrocercus urophasianus
Dendragapus fuliginosus LSUMZ
754431
Dendragapus fuliginosus
Tympanuchus phasianellus RTK53
979422
Tympanuchus phasianellus
Tympanuchus cupido FLMNH 46137
728073
Tympanuchus cupido
Lagopus muta UWBM 51660 T
504006
Lagopus muta
Falcipennis falcipennis UWBM 5
55929
Falcipennis falcipennis
Falcipennis canadensis FLMNH 4
55937
Falcipennis canadensis
Eulipoa wallacei NMR 117407 T
750774
Eulipoa wallacei
Tetrao urogalloides UWBM 47363
5925680
Tetrao urogalloides
Lyrurus mlokosiewiczi UWBM 647
168727
Lyrurus mlokosiewiczi
Perdix dauurica UWBM 66631 T
520561
Perdix dauurica
Perdix perdix RTK480 T
102712
Perdix perdix
Syrmaticus soemmerringii RTK49
572172
Syrmaticus soemmerringii
Syrmaticus reevesii RTK 496 T
572176
Syrmaticus reevesii
Syrmaticus mikado RTK495 T
572168
Syrmaticus mikado
Syrmaticus humiae RTK494 T
572170
Syrmaticus humiae
Syrmaticus ellioti RTK493 T
572165
Syrmaticus ellioti
Chrysolophus amherstiae RTK409
943883
Chrysolophus amherstiae
Leipoa ocellata UWBM 62959 T
109888
Leipoa ocellata
Chrysolophus pictus RTK410 T
521325
Chrysolophus pictus
Phasianus colchicus RTK481 T
102719
Phasianus colchicus
Catreus wallichii RTK408 T
521329
Catreus wallichii
Crossoptilon auritum RTK418 T
1098756
Crossoptilon auritum
Crossoptilon crossoptilon RTK4
352760
Crossoptilon crossoptilon
Lophura edwardsi FLMNH 45547 T
821600
Lophura edwardsi
Lophura swinhoii RTK453 T
53709
Lophura swinhoii
Lophura leucomelanos RTK454 T
53700
Lophura leucomelanos
Lophura nycthemera RTK452 T
624446
Lophura nycthemera
Lophura diardi RTK445 T
352745
Lophura diardi
Tallegalla fuscirostris KU 740
176333
Talegalla fuscirostris
Lophura inornata RTK450 T
53708
Lophura inornata
Lophura ignita RTK449 T
624448
Lophura ignita
Rheinardia ocellata FMNH 10528
727334
Rheinardia ocellata
Argusianus argus LSUMZ B13314
521339
Argusianus argus
Afropavo congensis RTK382 T
51349
Afropavo congensis
Pavo cristatus RTK477 T
453575
Pavo cristatus
Pavo muticus RTK478 T
102708
Pavo muticus
Tropicoperdix chloropus KU 254
3596057
Tropicoperdix chloropus
Haematortyx sanguiniceps LSUMZ
401527
Haematortyx sanguiniceps
Galloperdix spadicea LSUMZ 396
3596069
Galloperdix spadicea
ot:other
Maximum likelihood
node9
node1
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true
true
true
true
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true
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true
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true
true
true
ot:other
Maximum likelihood
node280
ot:bootstrapValues
tree2_ROOT
false
true
true
true
true
true
true
true
true
true
true
true
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100
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ot:other
Myr
SVD Quartets
node763
tree3_ROOT
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