pythonVersion 2.7.16 pythonImplementation CPython false Birds $1 ^(\S*\s+\S*).* true Source data for tree(s) 'tree1' tree1 Source data for tree(s) 'tree2' tree2 Source data for tree(s) 'tree3' tree3 ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:isTaxonExemplar ^ot:isTaxonExemplar otu162 otu163 otu56 otu57 ^ot:comment ^ot:branchLengthTimeUnit ^ot:nodeLabelMode ^ot:nodeLabelTimeUnit ^ot:reasonsToExcludeFromSynthesis ^ot:branchLengthTimeUnit ^ot:nodeLabelDescription ^ot:nodeLabelMode ^ot:nodeLabelTimeUnit ^ot:reasonsToExcludeFromSynthesis ^ot:bootstrapValues ^ot:nodeLabelMode ^ot:nodeLabelTimeUnit ^ot:reasonsToExcludeFromSynthesis The files associated with this dataset are licensed under a Creative Commons Attribution 4.0 International license. Randy Posada eliotmiller Emily Jane McTavish 837585 Galliformes ot_2072 Chen, D., Hosner, P. A., Dittmann, D. L., O’Neill, J. P., Birks, S. M., Braun, E. L., & Kimball, R. T. (2021). Divergence time estimation of Galliformes based on the best gene shopping scheme of ultraconserved elements. BMC Ecology and Evolution, 21(1). https://doi.org/10.1186/s12862-021-01935-1 2021 Apteryx australis genome SAMEA 241834 Apteryx australis Alectura lathami UWBM 55907 T 570956 Alectura lathami Polyplectron napoleonis RTK485 352746 Polyplectron napoleonis Polyplectron malacense RTK488 580471 Polyplectron malacense Polyplectron germaini RTK486 T 1058436 Polyplectron germaini Polyplectron bicalcaratum RTK4 102705 Polyplectron bicalcaratum Polyplectron chalcurum RTK484 110936 Polyplectron chalcurum Polyplectron inopinatum RTK487 658122 Polyplectron inopinatum Dendroperdix sephanea FMHN 484 55595 Dendroperdix sephaena Francolinus francolinus RTK413 676796 Francolinus francolinus Scleroptila afra LSUMZ B34277 681156 Scleroptila afra Peliperdix coqui ZMUC 113945 T 676785 Francolinus coqui Aepypodius arfakianus ANWC B26 352749 Aepypodius arfakianus Bambusicola thoracicus RTK389 521334 Bambusicola thoracicus Gallus varius RTK438 T 153572 Gallus varius Gallus gallus Genome SAMN02981 153563 Gallus gallus Gallus lafayettii RTK432 T 153554 Gallus lafayetii Gallus sonneratii RTK433 T 153560 Gallus sonneratii Tetraogallus himalayensis FLMN 849558 Tetraogallus himalayensis Tetraogallus altaicus UWBM 756 1033589 Tetraogallus altaicus Alectoris rufa RTK384 T 51360 Alectoris rufa Alectoris chukar RTK383 T 51358 Alectoris chukar Perdicula erythrorhyncha LSUMZ 3596063 Perdicula erythrorhyncha Penelopina nigra UWBM 70138 T 80424 Penelopina nigra Pternistis ahantensis LSUMZ B4 3596042 Pternistis ahantensis Pternistis bicalcaratus LSUMZ 681145 Francolinus bicalcaratus Pternistis swainsonii UWBM 531 55577 Francolinus swainsonii Pternistis leucoscepus FLMNH 4 914709 Francolinus leucoscepus Pternistis afer FLMNH 46699 T 676791 Francolinus afer Ammoperdix heyi LSUMZ B20815 T 124997 Ammoperdix heyi Coturnix ypsilophora ANSP 2296 520554 Synoicus ypsilophorus Anurophasis monorthonyx YPM 73 3596096 Anurophasis monorthonyx Excalfactoria adansonii FMNH 4 3596045 Synoicus adansonii Excalfactoria chinensis RTK413 144486 Coturnix chinensis Chamaepetes goudotii KU 16739 488154 Chamaepetes goudotii Margaroperdix madagarensis FMN 681154 Margaroperdix madagarensis Coturnix japonica YPM 140056 U 803622 Coturnix japonica Coturnix afra FMNH 467848 UQB 1098760 Coturnix coturnix Coturnix pectoralis UWBM 57615 602029 Coturnix pectoralis Coturnix delegorguei ZMUC 1364 1098762 Coturnix delegorguei Coturnix coromandelica FMNH 42 3596047 Coturnix coromandelica Oxyura jamaicensis FMNH 397634 T 88378 Oxyura jamaicensis Penelope pileata USNM 572502 T 1024688 Penelope pileata Anas platyrhynchos Genome SAMN00011637 765167 Anas platyrhynchos Struthio camelus genome SAMN02316164 647692 Struthio camelus Apteryx australis genome SAMEA2560515 241834 Apteryx australis Macrocephalon maleo AMNH DOT11013 T 750781 Macrocephalon maleo Megapodius layardi UWBM 90539 T 227314 Megapodius layardi Tallegalla fuscirostris KU 7404 T 176333 Talegalla fuscirostris Aepypodius arfakianus ANWC B26789 T 352749 Aepypodius arfakianus Aburria aburri LSUMZ B27864 T 963344 Aburria aburri Guttera pucherani LSUMZ B20771 T 684048 Guttera pucherani Ithaginis cruentus FMNH 423572 UQ 979426 Ithaginis cruentus Tetraophasis obscurus FMNH 109173 T 438396 Tetraophasis obscurus Pipile cumanensis B7500 T 157739 Pipile cumanensis Rhizothera longirostris YPM 62670 UQ 781248 Rhizothera longirostris Rhizothera longirostris YPM 042099 UQ 781248 Rhizothera longirostris Meleagris ocellata FLMNH 45111 T 446490 Meleagris ocellata Meleagris gallopavo Genome SAMN02981253 446482 Meleagris gallopavo Tetrastes bonasia ZMUC 139306 T 259105 Tetrastes bonasia Pipile jacutinga YPM 80237 UQB 1014142 Pipile jacutinga Falcipennis falcipennis UWBM 56980 T 55929 Falcipennis falcipennis Tetrao urogalloides UWBM 47363 UQB 5925680 Tetrao urogalloides Lyrurus mlokosiewiczi UWBM 64762 T 168727 Lyrurus mlokosiewiczi Falcipennis canadensis FLMNH 45718 T 55937 Falcipennis canadensis Tympanuchus phasianellus RTK533 T 979422 Tympanuchus phasianellus Tympanuchus cupido FLMNH 46137 T 728073 Tympanuchus cupido Dendragapus fuliginosus LSUMZ B61919 UQB 754431 Dendragapus fuliginosus Centrocercus urophasianus FLMNH 47008 T 728077 Centrocercus urophasianus Oreophasis derbianus DZ HGB2 T 488145 Oreophasis derbianus Syrmaticus soemmerringii RTK497 T 572172 Syrmaticus soemmerringii Crossoptilon crossoptilon RTK419 T 352760 Crossoptilon crossoptilon Ortalis vetula RTK476 T 109882 Ortalis vetula Chrysolophus amherstiae RTK409 T 943883 Chrysolophus amherstiae Rheinardia ocellata FMNH 105281 T 727334 Rheinardia ocellata Argusianus argus LSUMZ B13314 T 521339 Argusianus argus Struthio camelus genome SAMN02 647692 Struthio camelus Crax rubra LSUMZ B14200 T 132829 Crax rubra Tropicoperdix chloropus KU 25432 T 3596057 Tropicoperdix chloropus Haematortyx sanguiniceps LSUMZ B52646 T 401527 Haematortyx sanguiniceps Galloperdix spadicea LSUMZ 39646 T 3596069 Galloperdix spadicea Polyplectron napoleonis RTK485 T 352746 Polyplectron napoleonis Polyplectron malacense RTK488 T 580471 Polyplectron malacense Polyplectron bicalcaratum RTK481 T 102705 Polyplectron bicalcaratum Crax daubentoni FLMNH 45536 T 654723 Crax daubentoni Polyplectron inopinatum RTK487 T 658122 Polyplectron inopinatum Polyplectron chalcurum RTK484 T 110936 Polyplectron chalcurum Tetraogallus altaicus UWBM 75676 T 1033589 Tetraogallus altaicus Tetraogallus himalayensis FLMNH B26339 T 849558 Tetraogallus himalayensis Margaroperdix madagarensis FMNH384730 T 681154 Margaroperdix madagarensis Coturnix pectoralis UWBM 57615 UQB 602029 Coturnix pectoralis Coturnix delegorguei ZMUC 136472 UQB 1098762 Coturnix delegorguei Coturnix coromandelica FMNH 423162 UQB 3596047 Coturnix coromandelica Crax globulosa FLMNH 45537 T 654700 Crax globulosa Coturnix japonica YPM 140056 UQB 803622 Coturnix japonica Excalfactoria chinensis RTK413 T 144486 Coturnix chinensis Excalfactoria adansonii FMNH 423163 UQB 3596045 Synoicus adansonii Coturnix ypsilophora ANSP 22960 UQB 520554 Synoicus ypsilophorus Anurophasis monorthonyx YPM 73050 UQB 3596096 Anurophasis monorthonyx Pternistis ahantensis LSUMZ B45279 T 3596042 Pternistis ahantensis Pternistis leucoscepus FLMNH 45712 T 914709 Francolinus leucoscepus Pternistis swainsonii UWBM 53121 T 55577 Francolinus swainsonii Pternistis bicalcaratus LSUMZ B39312 T 681145 Francolinus bicalcaratus Pauxi pauxi LSUMZ B26971 T 1014138 Pauxi pauxi Perdicula erythrorhyncha LSUMZ 51339 T 3596063 Perdicula erythrorhyncha Francolinus francolinus RTK413 T 676796 Francolinus francolinus Dendroperdix sephanea FMHN 484654 T 55595 Dendroperdix sephaena Scleroptila afra LSUMZ B34277 T 681156 Scleroptila afra Bambusicola thoracicus RTK389 T 521334 Bambusicola thoracicus Gallus gallus Genome SAMN02981218 153563 Gallus gallus Nothocrax urumutum LSUMZ B1013 488148 Nothocrax urumutum Arborophila rufogularis LSUMZ B51357 T 74933 Arborophila rufogularis Caloperdix oculeus LSUMZ B20715 T 136466 Caloperdix oculeus Rollulus rouloul LSUMZ B24971 T 352755 Rollulus rouloul Melanoperdix niger FMNH 405025 T 3596095 Melanoperdix niger Xenoperdix udzungwensis ZMUC 114233 T 54195 Xenoperdix udzungwensis Ptilopachus petrosus FMNH B45101 T 867023 Ptilopachus petrosus Rhynchortyx cinctus LSUMZ B30000 T 3596005 Rhynchortyx cinctus Mitu salvini FMNH 410793 UQB 786420 Mitu salvini Dactylortyx thoracicus FMNH 433981 T 3596014 Dactylortyx thoracicus Odontophorus leucolaemus RTK470 T 594190 Odontophorus leucolaemus Dendrortyx macroura UWBM 113664 T 3596009 Dendrortyx macroura Colinus virginianus Genome SAMN00010210 204709 Colinus virginianus Callipepla californica RTK391 T 340882 Callipepla californica Philortyx fasciatus OMNH 19137 T 3596012 Philortyx fasciatus Acryllium vulturinum RTK534 T 684040 Acryllium vulturinum Nothocrax urumutum LSUMZ B10132 T 488148 Nothocrax urumutum Chamaepetes goudotii KU 16739 T 488154 Chamaepetes goudotii Guttera pucherani LSUMZ B20771 684048 Guttera pucherani Agelastes niger FMNH 433377 T 3596015 Agelastes niger Numida meleagris RTK466 T 684046 Numida meleagris Anas platyrhynchos Genome SAMN 765167 Anas platyrhynchos Ptilopachus petrosus FMNH B451 867023 Ptilopachus petrosus Rhynchortyx cinctus LSUMZ B300 3596005 Rhynchortyx cinctus Cyrtonyx montezumae RTK420 T 204716 Cyrtonyx montezumae Odontophorus leucolaemus RTK47 594190 Odontophorus leucolaemus Dactylortyx thoracicus FMNH 43 3596014 Dactylortyx thoracicus Oreortyx pictus RTK474 T 676779 Oreortyx pictus Dendrortyx macroura UWBM 11366 3596009 Dendrortyx macroura Philortyx fasciatus OMNH 19137 3596012 Philortyx fasciatus Colinus virginianus Genome SAM 204709 Colinus virginianus Callipepla californica RTK391 340882 Callipepla californica Oxyura jamaicensis FMNH 397634 88378 Oxyura jamaicensis Callipepla douglasi RTK392 T 340885 Callipepla douglasii Callipepla squamata RTK393 T 728092 Callipepla squamata Xenoperdix udzungwensis ZMUC 1 54195 Xenoperdix udzungwensis Arborophila rufogularis LSUMZ 74933 Arborophila rufogularis Arborophila torqueola TC257 T 991317 Arborophila torqueola Caloperdix oculeus LSUMZ B2071 136466 Caloperdix oculeus Melanoperdix niger FMNH 405025 3596095 Melanoperdix niger Rollulus rouloul LSUMZ B24971 352755 Rollulus rouloul Lerwa lerwa FMNH 424697 T 3596087 Lerwa lerwa Ithaginis cruentus FMNH 423572 979426 Ithaginis cruentus Macrocephalon maleo AMNH DOT11 750781 Macrocephalon maleo Lophophorus impejanus RTK484 T 624442 Lophophorus impejanus Tetraophasis obscurus FMNH 109 438396 Tetraophasis obscurus Tragopan blythii RTK502 T 352751 Tragopan blythii Tragopan satyra RTK504 T 51354 Tragopan satyra Tragopan temminckii RTK527 T 51356 Tragopan temminckii Tragopan caboti RTK503 T 250898 Tragopan caboti Rhizothera longirostris YPM 62 781248 Rhizothera longirostris Rhizothera longirostris YPM 04 781248 Rhizothera longirostris Pucrasia macrolopha RTK490 T 572162 Pucrasia macrolopha Meleagris ocellata FLMNH 45111 446490 Meleagris ocellata Megapodius layardi UWBM 90539 227314 Megapodius layardi Meleagris gallopavo Genome SAM 446482 Meleagris gallopavo Bonasa umbellus RTK390 T 728082 Bonasa umbellus Tetrastes bonasia ZMUC 139306 259105 Tetrastes bonasia Centrocercus urophasianus FLMN 728077 Centrocercus urophasianus Dendragapus fuliginosus LSUMZ 754431 Dendragapus fuliginosus Tympanuchus phasianellus RTK53 979422 Tympanuchus phasianellus Tympanuchus cupido FLMNH 46137 728073 Tympanuchus cupido Lagopus muta UWBM 51660 T 504006 Lagopus muta Falcipennis falcipennis UWBM 5 55929 Falcipennis falcipennis Falcipennis canadensis FLMNH 4 55937 Falcipennis canadensis Eulipoa wallacei NMR 117407 T 750774 Eulipoa wallacei Tetrao urogalloides UWBM 47363 5925680 Tetrao urogalloides Lyrurus mlokosiewiczi UWBM 647 168727 Lyrurus mlokosiewiczi Perdix dauurica UWBM 66631 T 520561 Perdix dauurica Perdix perdix RTK480 T 102712 Perdix perdix Syrmaticus soemmerringii RTK49 572172 Syrmaticus soemmerringii Syrmaticus reevesii RTK 496 T 572176 Syrmaticus reevesii Syrmaticus mikado RTK495 T 572168 Syrmaticus mikado Syrmaticus humiae RTK494 T 572170 Syrmaticus humiae Syrmaticus ellioti RTK493 T 572165 Syrmaticus ellioti Chrysolophus amherstiae RTK409 943883 Chrysolophus amherstiae Leipoa ocellata UWBM 62959 T 109888 Leipoa ocellata Chrysolophus pictus RTK410 T 521325 Chrysolophus pictus Phasianus colchicus RTK481 T 102719 Phasianus colchicus Catreus wallichii RTK408 T 521329 Catreus wallichii Crossoptilon auritum RTK418 T 1098756 Crossoptilon auritum Crossoptilon crossoptilon RTK4 352760 Crossoptilon crossoptilon Lophura edwardsi FLMNH 45547 T 821600 Lophura edwardsi Lophura swinhoii RTK453 T 53709 Lophura swinhoii Lophura leucomelanos RTK454 T 53700 Lophura leucomelanos Lophura nycthemera RTK452 T 624446 Lophura nycthemera Lophura diardi RTK445 T 352745 Lophura diardi Tallegalla fuscirostris KU 740 176333 Talegalla fuscirostris Lophura inornata RTK450 T 53708 Lophura inornata Lophura ignita RTK449 T 624448 Lophura ignita Rheinardia ocellata FMNH 10528 727334 Rheinardia ocellata Argusianus argus LSUMZ B13314 521339 Argusianus argus Afropavo congensis RTK382 T 51349 Afropavo congensis Pavo cristatus RTK477 T 453575 Pavo cristatus Pavo muticus RTK478 T 102708 Pavo muticus Tropicoperdix chloropus KU 254 3596057 Tropicoperdix chloropus Haematortyx sanguiniceps LSUMZ 401527 Haematortyx sanguiniceps Galloperdix spadicea LSUMZ 396 3596069 Galloperdix spadicea ot:other Maximum likelihood node9 node1 false true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true false true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true ot:other Maximum likelihood node280 ot:bootstrapValues tree2_ROOT false true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 94 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 62 100 100 46 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 ot:other Myr SVD Quartets node763 tree3_ROOT false true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true