pythonVersion 2.7.16 pythonImplementation CPython false Birds www ^(\S*)\s+\b ^(\S*)\s+\b $1 ^(\S*\s+\S*).* false Source data for tree(s) 'tree1' tree1 Source data for tree(s) 'tree2' tree2 Additional information about the different tree files (From Author) Source data for tree(s) 'tree3' tree3 ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues @label otu1 otu67 otu10 otu11 otu12 otu13 otu14 otu15 otu16 otu17 otu18 otu19 otu2 otu20 otu21 otu22 otu23 otu24 otu25 otu26 otu27 otu28 otu29 otu3 otu30 otu31 otu32 otu33 otu34 otu35 otu36 otu37 otu38 otu4 otu5 otu6 otu7 otu8 otu9 otu39 otu40 otu41 otu42 otu43 otu44 otu45 otu46 otu47 otu48 otu49 otu50 otu54 otu55 otu59 otu51 otu52 otu53 otu56 otu57 otu58 otu60 otu61 otu62 otu63 otu64 otu65 otu66 ^ot:comment ^ot:nodeLabelDescription ^ot:nodeLabelMode ^ot:nodeLabelTimeUnit ^ot:reasonsToExcludeFromSynthesis ^ot:nodeLabelDescription ^ot:nodeLabelMode ^ot:nodeLabelTimeUnit ^ot:reasonsToExcludeFromSynthesis ^ot:nodeLabelDescription ^ot:nodeLabelMode ^ot:nodeLabelTimeUnit ^ot:reasonsToExcludeFromSynthesis There is an error with the Dryad Data link, therefore all files have been placed in a Dropbox folder for the meantime. Dropbox links, with curation material, were provided directly by the study corresponding author Andre E. Moncrieff. All Dryad files: https://www.dropbox.com/sh/idw7w67ous3y80o/AAAntL5qsulsBw4ANzCIbrC9a?dl=0 PHYLIP files (for IQ-TREE analyses) and NEXUS files (for SVDquartets and SNAPP analyses) used in the study: https://www.dropbox.com/sh/6g960x4865uw06h/AAD36diwEePGdlR1OjSi0HNBa?dl=0 Randy Posada eliotmiller 881043 Pipridae ot_2098 Moncrieff, A. E., Faircloth, B. C., & Brumfield, R. T. (2022). Systematics of Lepidothrix manakins (Aves: Passeriformes: Pipridae) using RADcap markers. Molecular Phylogenetics and Evolution, 173, 107525. https://doi.org/10.1016/j.ympev.2022.107525 2022 LSUMNS 76683www Cryptopipo holochlora ..www Peruvvv North ridge of Quebrada Quirapokiari watershedqqq 22.86 km SW mouth of Rio Cohengua 3598411 Cryptopipo holochlora FMNH toepad251333www Lepidothrix coronata caquetaewww Colombiavvv Montanita 49248 Lepidothrix coronata LSUMNS toepad83398www Lepidothrix coronata coronatawww Ecuadorvvv Limoncocha 49248 Lepidothrix coronata FMNH P13-169www Lepidothrix coronata exquisitawww Peruvvv Prov. Tocacheqqq Cordilera Azul NPqqq Rio Pescaderoqqq northeast of Shapaja 49248 Lepidothrix coronata LSUMNS 95933www Lepidothrix coronata exquisitawww Peruvvv Comunidad Cushireniqqq 52.3 km S Atalayaqqq W. bank Rio Tambo 49248 Lepidothrix coronata LSUMNS 99418www Lepidothrix coronata exquisitawww Peruvvv 13 km W Tournavista 49248 Lepidothrix coronata LSUMNS 5450www Lepidothrix coronata exquisitawww Peruvvv 20 km by road NE Tarapoto on road to Yurimaguas 49248 Lepidothrix coronata FMNH 433692www Lepidothrix coronata caelestipileatawww Peruvvv Moskitaniaqqq 13.4 km NNW Atalayaqqq left bank Alto Madre de Dios 49248 Lepidothrix coronata LSUMNS 4882www Lepidothrix coronata coronatawww Peruvvv S Rio Amazonasqqq ca 10 km SSW mouth Rio Napo on E. bank of Quebrada Vainilla 49248 Lepidothrix coronata LSUMNS 95889www Lepidothrix coronata coronatawww Peruvvv Comunidad Nuevo San Martinqqq 65.6 km ENE Atalayaqqq S. bank Rio Inuya 49248 Lepidothrix coronata LSUMNS 99317www Lepidothrix coronata coronatawww Peruvvv 10.8 km SE Masisea 49248 Lepidothrix coronata AMNH 13937www Lepidothrix coronata carbonatawww Venezuelavvv Vicinity of Cerro de la Neblina base camp on Rio Mawarinuma 49248 Lepidothrix coronata LSUMNS 952www Lepidothrix coronata regaliswww Boliviavvv Rio Beniqqq ca 20 km by river N Puerto Linares 49248 Lepidothrix coronata LSUMNS 94835www Lepidothrix coronata regaliswww Boliviavvv 5.9 km SSE Villa Tunari 49248 Lepidothrix coronata MPEG T23371www Lepidothrix coronata coronatawww Brazilvvv Jutaiqqq ESEC Jutai-Solimoesqqq Capivara 49248 Lepidothrix coronata MPEG T8066www Lepidothrix coronata caelestipileatawww Brazilvvv Porto Acreqqq AC 010 linha 07qqq Reserva Humaita 49248 Lepidothrix coronata LSUMNS 98191www Lepidothrix coronata caelestipileatawww Brazilvvv Right bank Jurua Riverqqq ca 120 km SW Carauari 49248 Lepidothrix coronata MPEG T12282www Lepidothrix coronata coronatawww Brazilvvv Careiroqqq BR319 km 158qqq Tupana Lodge 49248 Lepidothrix coronata MPEG T13171www Lepidothrix coronata ..www Brazilvvv Humaitaqqq margem esquerda Rio Madeiraqqq Ipixuna 49248 Lepidothrix coronata MPEG T13220www Lepidothrix coronata caelestipileatawww Brazilvvv Humaitaqqq margem esquerda Rio Madeiraqqq Ipixuna 49248 Lepidothrix coronata LSUMNS 98099www Lepidothrix coronata coronatawww Brazilvvv Left bank Jurua Riverqqq ca 156 km SW Carauari 49248 Lepidothrix coronata LSUMNS 42703www Lepidothrix coronata coronatawww Peruvvv Ca 54 km NNW mouth of Morona on W. bank 49248 Lepidothrix coronata AMNH 11888www Lepidothrix coronata carbonatawww Venezuelavvv N side Cerro Guaiquinima Camp 1 49248 Lepidothrix coronata LSUMNS 3030www Lepidothrix coronata coronatawww Peruvvv 1.5 km S Libertadqqq S bank Rio Napo 80 km N Iquitos 49248 Lepidothrix coronata LSUMNS 16099www Lepidothrix coronata velutinawww Costa Ricavvv Rio Copeyqqq ca 4 km E Jaco 49248 Lepidothrix coronata LSUMNS 82117www Lepidothrix coronata velutinawww Costa Ricavvv Golfitoqqq Parque Nacional Piedras Blancas 49248 Lepidothrix coronata LSUMNS 16128www Lepidothrix coronata velutinawww Costa Ricavvv Marenco Biological Stationqqq Peninsula de Osa 49248 Lepidothrix coronata LSUMNS 2215www Lepidothrix coronata minusculawww Panamavvv About 6 km NW Cana on E slope Cerro Pirre 49248 Lepidothrix coronata LSUMNS 26553www Lepidothrix coronata minusculawww Panamavvv 17 km by road NW Gamboaqqq Rio Agua Salud 49248 Lepidothrix coronata LSUMNS 28460www Lepidothrix coronata minusculawww Panamavvv Parque National Soberaniaqqq 4 km SE Gamboaqqq along Rio Sardinilla 49248 Lepidothrix coronata FMNH toepad255669www Lepidothrix coronata minusculawww Colombiavvv Sabaletas 49248 Lepidothrix coronata ANSP 17140www Lepidothrix coronata minusculawww Ecuadorvvv 20 km NNW of Alto Tambo 49248 Lepidothrix coronata LSUMNS 76341www Lepidothrix coeruleocapilla ..www Peruvvv North ridge of Quebrada Quirapokiari watershedqqq 22.86 km SW mouth of Rio Cohengua 388714 Lepidothrix coeruleocapilla MPEG T2975www Lepidothrix coronata carbonatawww Brazilvvv Rio Aracaqqq Barcelos 49248 Lepidothrix coronata LSUMNS 88982www Lepidothrix coeruleocapilla ..www Peruvvv Santeni River Valleyqqq 9.5 km NE Oventeni 388714 Lepidothrix coeruleocapilla LSUMNS 1985www Lepidothrix coeruleocapilla ..www Peruvvv Puellasqqq km 41 on Villa Rica-Puerto Bermudez highway 388714 Lepidothrix coeruleocapilla LSUMNS 88972www Lepidothrix coeruleocapilla ..www Peruvvv Comunidad Nativa Kirahuanero 388714 Lepidothrix coeruleocapilla LSUMNS 5576www Lepidothrix isidorei leucopygiawww Peruvvv 15 km by trail NE Jirillo on trail to Balsapuerto 3599060 Lepidothrix isidorei LSUMNS 5587www Lepidothrix isidorei leucopygiawww Peruvvv 15 km by trail NE Jirillo on trail to Balsapuerto 3599060 Lepidothrix isidorei LSUMNS 6072www Lepidothrix isidorei isidoreiwww Ecuadorvvv West slope of Cordillera del Cutucu on trail from Lagrono to Yaupi-Yapitya 3599060 Lepidothrix isidorei LSUMNS 6077www Lepidothrix isidorei isidoreiwww Ecuadorvvv West slope of Cordillera del Cutucu on trail from Lagrono to Yaupi-Yapitya 3599060 Lepidothrix isidorei LSUMNS 36717www Lepidothrix nattereri graciliswww Brazilvvv Reserva Biologica Rio Ouro Pretoqqq ca 70 km E Guajara-Mirim 165537 Lepidothrix nattereri LSUMNS 14733www Lepidothrix nattereri graciliswww Boliviavvv Serrania de Huanchacaqqq 25 km SE Catarata Arco Iris 165537 Lepidothrix nattereri LSUMNS 18379www Lepidothrix nattereri graciliswww Boliviavvv Velascoqqq Parque Nacional Noel Kempff Mercado 86 km ESE Florida 165537 Lepidothrix nattereri MPEG T2567www Lepidothrix coronata carbonatawww Brazilvvv Novo Airaoqqq Igarape-Acu 49248 Lepidothrix coronata LSUMNS 80493www Lepidothrix nattereri nattereriwww Brazilvvv Right bank of Rio Sucunduri 165537 Lepidothrix nattereri INPA 10873www Lepidothrix iris eucephalawww Brazilvvv Margem direita do Rio Tapajosqqq 102 km sudoeste de Itaituba 49250 Lepidothrix iris INPA 14594www Lepidothrix iris eucephalawww Brazilvvv Margens direita do Rio Tapajos e direita do Jamanxinqqq 80 km SW Itaituba 49250 Lepidothrix iris INPA 11288www Lepidothrix iris eucephalawww Brazilvvv Margem direita do Rio Tapajosqqq 69 km sudoeste de Itaituba 49250 Lepidothrix iris LSUMNS 77608www Lepidothrix nattereri nattereriwww Brazilvvv Barra de Sao Manuel 165537 Lepidothrix nattereri LSUMNS 80509www Lepidothrix nattereri nattereriwww Brazilvvv Left bank of Rio Sucunduriqqq Right bank of lower Rio Acari 165537 Lepidothrix nattereri INPA 7031www Lepidothrix vilasboasi ..www Brazilvvv Margem direita do Rio Tapajosqqq margem esquerda do Rio Jamanximqqq Machadoqqq 146 km SO Itaituba 1097457 Lepidothrix vilasboasi INPA 14653www Lepidothrix vilasboasi ..www Brazilvvv Interflúvio Tapajos-Jamanxinqqq ca 140 km SW de Itaitubaqqq Machado 1097457 Lepidothrix vilasboasi INPA 11268www Lepidothrix vilasboasi ..www Brazilvvv Margem direita do Rio Tapajosqqq 82 km sudoeste de Itaituba 1097457 Lepidothrix vilasboasi LSUMNS 81325www Lepidothrix nattereri nattereriwww Brazilvvv Left Bank Rio Canuma 165537 Lepidothrix nattereri MPEG T2792www Lepidothrix coronata carbonatawww Brazilvvv Rio Cuiuniqqq margem direitaqqq Barcelos 49248 Lepidothrix coronata FMNH toepad344171www Lepidothrix coronataxsuavissima ..www Brazilvvv BV-8qqq 6 km Eqqq on Venezuela border 319677 Lepidothrix suavissima LSUMNS 48320www Lepidothrix suavissima ..www Guyanavvv Kopinang Riverqqq ca 7 km SW Kopinang Village 319677 Lepidothrix suavissima LSUMNS 48307www Lepidothrix suavissima ..www Guyanavvv S slope Kopinang Mountainqqq 9 km W Kopinang Village 319677 Lepidothrix suavissima LSUMNS 48322www Lepidothrix suavissima ..www Guyanavvv Kopinang Riverqqq ca 7 km SW Kopinang Village 319677 Lepidothrix suavissima LSUMNS 65823www Lepidothrix serena ..www Surinamevvv Lely Gebergte 1027024 Lepidothrix serena LSUMNS 71585www Lepidothrix serena ..www Surinamevvv Nassau Bebergte 1027024 Lepidothrix serena LSUMNS 20306www Lepidothrix serena ..www Brazilvvv Munic. 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