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"trees1", "@treeID": "tree3"}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": [], "^ot:comment": "There is an error with the Dryad Data link, therefore all files have been placed in a Dropbox folder for the meantime. Dropbox links, with curation material, were provided directly by the study corresponding author Andre E. Moncrieff. \n\nAll Dryad files: \nhttps://www.dropbox.com/sh/idw7w67ous3y80o/AAAntL5qsulsBw4ANzCIbrC9a?dl=0\n\nPHYLIP files (for IQ-TREE analyses) and NEXUS files (for SVDquartets and SNAPP analyses) used in the study:\nhttps://www.dropbox.com/sh/6g960x4865uw06h/AAD36diwEePGdlR1OjSi0HNBa?dl=0\n ", "^ot:curatorName": ["Randy Posada", "eliotmiller"], "^ot:dataDeposit": {"@href": "https://doi.org/10.5061/dryad.j9kd51cds"}, "^ot:focalClade": 881043, "^ot:focalCladeOTTTaxonName": "Pipridae", "^ot:otusElementOrder": ["otus1"], "^ot:studyId": "ot_2098", "^ot:studyPublication": {"@href": "http://dx.doi.org/10.1016/j.ympev.2022.107525"}, "^ot:studyPublicationReference": "Moncrieff, A. E., Faircloth, B. C., & Brumfield, R. T. (2022). Systematics of Lepidothrix manakins (Aves: Passeriformes: Pipridae) using RADcap markers. Molecular Phylogenetics and Evolution, 173, 107525. https://doi.org/10.1016/j.ympev.2022.107525\n", "^ot:studyYear": 2022, "^ot:tag": [], "^ot:treesElementOrder": ["trees1"], "otusById": {"otus1": {"otuById": {"otu1": {"^ot:originalLabel": "LSUMNS 76683www Cryptopipo holochlora ..www Peruvvv North ridge of Quebrada Quirapokiari watershedqqq 22.86 km SW mouth of Rio Cohengua", "^ot:ottId": 3598411, "^ot:ottTaxonName": "Cryptopipo holochlora"}, "otu10": {"^ot:originalLabel": "FMNH toepad251333www Lepidothrix coronata caquetaewww Colombiavvv Montanita", "^ot:ottId": 49248, "^ot:ottTaxonName": "Lepidothrix coronata"}, "otu11": {"^ot:originalLabel": "LSUMNS toepad83398www Lepidothrix coronata coronatawww Ecuadorvvv Limoncocha", "^ot:ottId": 49248, "^ot:ottTaxonName": "Lepidothrix coronata"}, "otu12": {"^ot:originalLabel": "FMNH P13-169www Lepidothrix coronata exquisitawww Peruvvv Prov. 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Dropbox links, with curation material, were provided directly by the study corresponding author Andre E. Moncrieff. </p>\n<p>All Dryad files: \n<a target=\"_blank\" href=\"https://www.dropbox.com/sh/idw7w67ous3y80o/AAAntL5qsulsBw4ANzCIbrC9a?dl=0\">https://www.dropbox.com/sh/idw7w67ous3y80o/AAAntL5qsulsBw4ANzCIbrC9a?dl=0</a></p>\n<p>PHYLIP files (for IQ-TREE analyses) and NEXUS files (for SVDquartets and SNAPP analyses) used in the study:\n<a target=\"_blank\" href=\"https://www.dropbox.com/sh/6g960x4865uw06h/AAD36diwEePGdlR1OjSi0HNBa?dl=0\">https://www.dropbox.com/sh/6g960x4865uw06h/AAD36diwEePGdlR1OjSi0HNBa?dl=0</a></p>", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "ee8bec2ccad3be12a2e3fba869a94775c6de5bf4", "author_name": "eliotmiller", "author_email": "ANONYMOUS", "date": "Thu, 22 Dec 2022 19:47:50 +0000", "date_ISO_8601": "2022-12-22 19:47:50 +0000", "relative_date": "3 years, 4 months ago", "message_subject": "Update document 'ot_2098' via OpenTree API"}, {"id": "39489e59662116218c85d69135514864c117ceee", "author_name": "Randy Posada", "author_email": "ANONYMOUS", "date": "Tue, 7 Jun 2022 18:11:32 +0000", "date_ISO_8601": "2022-06-07 18:11:32 +0000", "relative_date": "3 years, 11 months ago", "message_subject": "Added curator note", "message_body": "Updating data availability\n\n(Update document 'ot_2098' via OpenTree API)"}, {"id": "10fdfb295643280b004d8639ad9b80f52b1ac1f6", "author_name": "Randy Posada", "author_email": "ANONYMOUS", "date": "Tue, 7 Jun 2022 17:56:49 +0000", "date_ISO_8601": "2022-06-07 17:56:49 +0000", "relative_date": "3 years, 11 months ago", "message_subject": "Third Tree (SVD) Curation", "message_body": "Added tree, added tree properties\n\n(Update document 'ot_2098' via OpenTree API)"}, {"id": "ef291190853a768a5408873d48e68ae33cc80f4a", "author_name": "Randy Posada", "author_email": "ANONYMOUS", "date": "Tue, 7 Jun 2022 17:36:42 +0000", "date_ISO_8601": "2022-06-07 17:36:42 +0000", "relative_date": "3 years, 11 months ago", "message_subject": "Adding 95 Tree", "message_body": "Added tree and added supplementary file that was emailed by the author.\n\n(Update document 'ot_2098' via OpenTree API)"}, {"id": "ed6130b3c0deb98d322380de639a652b07181bce", "author_name": "Randy Posada", "author_email": "ANONYMOUS", "date": "Tue, 7 Jun 2022 17:21:12 +0000", "date_ISO_8601": "2022-06-07 17:21:12 +0000", "relative_date": "3 years, 11 months ago", "message_subject": "OTU mapping and Tree rooting", "message_body": "noted tree parameters\n\n(Update document 'ot_2098' via OpenTree API)"}, {"id": "cc9bd6c5db13043fccf7167d3f05ea5e10bc670b", "author_name": "Randy Posada", "author_email": "ANONYMOUS", "date": "Tue, 7 Jun 2022 17:02:14 +0000", "date_ISO_8601": "2022-06-07 17:02:14 +0000", "relative_date": "3 years, 11 months ago", "message_subject": "Adding tree", "message_body": "(Update document 'ot_2098' via OpenTree API)"}, {"id": "90353c5e9da34585c2451d4c2f8c7e0523a63f88", "author_name": "Randy Posada", "author_email": "ANONYMOUS", "date": "Mon, 6 Jun 2022 00:53:28 +0000", "date_ISO_8601": "2022-06-06 00:53:28 +0000", "relative_date": "3 years, 11 months ago", "message_subject": "Providing Links and Establishing curation", "message_body": "Awaiting Dryad files from author*\n\n(Update document 'ot_2098' via OpenTree API)"}, {"id": "02e79d1d75d25e7cefb1402bd3b4ab6089ffb648", "author_name": "Randy Posada", "author_email": "ANONYMOUS", "date": "Mon, 6 Jun 2022 00:38:06 +0000", "date_ISO_8601": "2022-06-06 00:38:06 +0000", "relative_date": "3 years, 11 months ago", "message_subject": "Update document 'ot_2098' via OpenTree API"}]}