{"sha": "c33806c9ee11db205ee8c02a42e31b1c3128e299", "data": {"nexml": {"@about": "#study", "@generator": "Open Tree API", "@id": "study", "@nexml2json": "0.0.0", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xhtml": "http://www.w3.org/1999/xhtml/vocab#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "otus": {"@id": "otus1", "otu": [{"@id": "otu10", "@about": "#otu10", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Nyctibius jamaicensis"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 228481}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Nyctibius jamaicensis"}]}, {"@id": "otu11", "@about": "#otu11", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Nyctibius leucopterus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 178241}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Nyctibius leucopterus"}]}, {"@id": "otu12", "@about": "#otu12", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Nyctibius maculosus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 701553}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Nyctibius maculosus"}]}, {"@id": "otu13", "@about": "#otu13", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Nyctibius aethereus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 178251}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Nyctibius aethereus"}]}, {"@id": "otu14", "@about": "#otu14", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Phyllaemulor bracteatus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 178250}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Nyctibius bracteatus"}]}, {"@id": "otu15", "@about": "#otu15", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Podargus strigoides"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 313120}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Podargus strigoides"}]}, {"@id": "otu16", "@about": "#otu16", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Batrachostomus septimus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 624321}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Batrachostomus septimus"}]}, {"@id": "otu17", "@about": "#otu17", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Aegotheles cristatus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 540033}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Aegotheles cristatus"}]}, {"@id": "otu18", "@about": "#otu18", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Aegotheles insignis"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 331487}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Euaegotheles insignis"}]}, {"@id": "otu19", "@about": "#otu19", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Hemiprocne mystacea"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 174365}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Hemiprocne mystacea"}]}, {"@id": "otu20", "@about": "#otu20", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Aerodramus vanikorensis"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 332662}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Aerodramus vanikorensis"}]}, {"@id": "otu21", "@about": "#otu21", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Streptoprocne zonaris"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 697414}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Streptoprocne zonaris"}]}, {"@id": "otu22", "@about": "#otu22", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Topaza pella"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 664346}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Topaza pella"}]}, {"@id": "otu23", "@about": "#otu23", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Colibri coruscans"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 804120}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Colibri coruscans"}]}, {"@id": "otu24", "@about": "#otu24", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Anseranas semipalmata"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 714464}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Anseranas semipalmata"}]}, {"@id": "otu25", "@about": "#otu25", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Gallus gallus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 153563}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Gallus gallus"}]}, {"@id": "otu3", "@about": "#otu3", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Columba livia"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 938416}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Columba livia"}]}, {"@id": "otu4", "@about": "#otu4", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Eurostopodus mystacalis"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 798642}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Eurostopodus mystacalis"}]}, {"@id": "otu5", "@about": "#otu5", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Lyncornis macrotis"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 483809}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Lyncornis macrotis"}]}, {"@id": "otu6", "@about": "#otu6", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Hydropsalis rufiventris"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 102377}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Lurocalis rufiventris"}]}, {"@id": "otu7", "@about": "#otu7", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Steatornis caripensis"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 701548}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Steatornis caripensis"}]}, {"@id": "otu8", "@about": "#otu8", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Nyctibius grandis"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 178249}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Nyctibius grandis"}]}, {"@id": "otu9", "@about": "#otu9", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Nyctibius griseus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 178242}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Nyctibius griseus"}]}], "@about": "#otus1"}, "trees": {"@otus": "otus1", "@id": "trees1", "tree": [{"@label": "D4IU_Tree_(Figure_6) ", "@xsi:type": "nex:FloatTree", "rootedge": [{"@id": "enode2", "@length": "0.0", "@target": "node2", "@about": "#enode2"}], "node": [{"@label": "1.00000000", "@root": true, "@id": "node4", "@about": "#node4"}, {"@id": "node2", "@about": "#node2"}, {"@otu": "otu24", "@id": "node3", "@about": "#node3", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu25", "@id": "node45", "@about": "#node45", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node5", "@about": "#node5"}, {"@id": "node11", "@about": "#node11"}, {"@id": "node12", "@about": "#node12"}, {"@otu": "otu7", "@id": "node13", "@about": "#node13", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node14", "@about": "#node14"}, {"@id": "node15", "@about": "#node15"}, {"@otu": "otu8", "@id": "node16", "@about": "#node16", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node17", "@about": "#node17"}, {"@id": "node18", "@about": "#node18"}, {"@id": "node19", "@about": "#node19"}, {"@otu": "otu11", "@id": "node20", "@about": "#node20", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu12", "@id": "node21", "@about": "#node21", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node22", "@about": "#node22"}, {"@otu": "otu9", "@id": "node23", "@about": "#node23", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu10", "@id": "node24", "@about": "#node24", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu13", "@id": "node25", "@about": "#node25", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu14", "@id": "node26", "@about": "#node26", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node27", "@about": "#node27"}, {"@id": "node28", "@about": "#node28"}, {"@id": "node29", "@about": "#node29"}, {"@id": "node30", "@about": "#node30"}, {"@otu": "otu23", "@id": "node31", "@about": "#node31", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu22", "@id": "node32", "@about": "#node32", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node33", "@about": "#node33"}, {"@otu": "otu19", "@id": "node34", "@about": "#node34", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node35", "@about": "#node35"}, {"@otu": "otu20", "@id": "node36", "@about": "#node36", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu21", "@id": "node37", "@about": "#node37", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node38", "@about": "#node38"}, {"@otu": "otu17", "@id": "node39", "@about": "#node39", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu18", "@id": "node40", "@about": "#node40", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node41", "@about": "#node41"}, {"@otu": "otu15", "@id": "node42", "@about": "#node42", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu16", "@id": "node43", "@about": "#node43", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node6", "@about": "#node6"}, {"@id": "node7", "@about": "#node7"}, {"@otu": "otu6", "@id": "node8", "@about": "#node8", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu5", "@id": "node9", "@about": "#node9", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu4", "@id": "node10", "@about": "#node10", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu3", "@id": "node44", "@about": "#node44", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}], "edge": [{"@length": 0.039786, "@source": "node4", "@target": "node2", "@id": "edge3", "@about": "#edge3", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:bootstrapValues", "@datatype": "xsd:int", "$": 100}]}, {"@length": 0.034496, "@source": "node2", "@target": "node3", "@id": "edge2", "@about": "#edge2"}, {"@length": 0.071074, "@source": "node2", "@target": "node45", "@id": "edge44", "@about": "#edge44"}, {"@length": 0.003573, "@source": "node4", "@target": "node5", "@id": "edge4", "@about": "#edge4", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:bootstrapValues", "@datatype": "xsd:int", "$": 100}]}, {"@length": 0.001123, "@source": "node5", "@target": "node11", "@id": "edge10", "@about": "#edge10", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:bootstrapValues", "@datatype": "xsd:int", "$": 100}]}, {"@length": 0.001234, "@source": "node11", "@target": "node12", "@id": "edge11", "@about": "#edge11", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:bootstrapValues", "@datatype": "xsd:int", "$": 100}]}, {"@length": 0.038456, "@source": "node12", "@target": "node13", "@id": "edge12", "@about": "#edge12"}, {"@length": 0.02471, "@source": "node12", "@target": "node14", "@id": "edge13", "@about": "#edge13", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:bootstrapValues", "@datatype": "xsd:int", "$": 100}]}, {"@length": 0.005245, "@source": "node14", "@target": "node15", "@id": "edge14", "@about": "#edge14", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:bootstrapValues", "@datatype": "xsd:int", "$": 100}]}, {"@length": 0.010223, "@source": "node15", "@target": "node16", "@id": "edge15", "@about": "#edge15"}, {"@length": 0.000836, "@source": "node15", "@target": "node17", "@id": "edge16", "@about": "#edge16", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:bootstrapValues", "@datatype": "xsd:int", "$": 100}]}, {"@length": 0.001738, "@source": "node17", "@target": "node18", "@id": "edge17", "@about": "#edge17", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:bootstrapValues", "@datatype": "xsd:int", "$": 100}]}, {"@length": 0.003171, "@source": "node18", "@target": "node19", "@id": "edge18", "@about": "#edge18", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:bootstrapValues", "@datatype": "xsd:int", "$": 100}]}, {"@length": 0.007455, "@source": "node19", "@target": "node20", "@id": "edge19", "@about": "#edge19"}, {"@length": 0.008208, "@source": "node19", "@target": "node21", "@id": "edge20", "@about": "#edge20"}, {"@length": 0.006832, "@source": "node18", "@target": "node22", "@id": "edge21", "@about": "#edge21", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:bootstrapValues", "@datatype": "xsd:int", "$": 100}]}, {"@length": 0.003017, "@source": "node22", "@target": "node23", "@id": "edge22", "@about": "#edge22"}, {"@length": 0.003471, "@source": "node22", "@target": "node24", "@id": "edge23", "@about": "#edge23"}, {"@length": 0.010449, "@source": "node17", "@target": "node25", "@id": "edge24", "@about": "#edge24"}, {"@length": 0.022518, "@source": "node14", "@target": "node26", "@id": "edge25", "@about": "#edge25"}, {"@length": 0.001528, "@source": "node11", "@target": "node27", "@id": "edge26", "@about": "#edge26", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:bootstrapValues", "@datatype": "xsd:int", "$": 100}]}, {"@length": 0.006834, "@source": "node27", "@target": "node28", "@id": "edge27", "@about": "#edge27", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:bootstrapValues", "@datatype": "xsd:int", "$": 100}]}, {"@length": 0.008258, "@source": "node28", "@target": "node29", "@id": "edge28", "@about": "#edge28", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:bootstrapValues", "@datatype": "xsd:int", "$": 100}]}, {"@length": 0.047487, "@source": "node29", "@target": "node30", "@id": "edge29", "@about": "#edge29", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:bootstrapValues", "@datatype": "xsd:int", "$": 100}]}, {"@length": 0.015644, "@source": "node30", "@target": "node31", "@id": "edge30", "@about": "#edge30"}, {"@length": 0.014388, "@source": "node30", "@target": "node32", "@id": "edge31", "@about": "#edge31"}, {"@length": 0.01965, "@source": "node29", "@target": "node33", "@id": "edge32", "@about": "#edge32", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:bootstrapValues", "@datatype": "xsd:int", "$": 100}]}, {"@length": 0.02324, "@source": "node33", "@target": "node34", "@id": "edge33", "@about": "#edge33"}, {"@length": 0.006443, "@source": "node33", "@target": "node35", "@id": "edge34", "@about": "#edge34", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:bootstrapValues", "@datatype": "xsd:int", "$": 100}]}, {"@length": 0.025794, "@source": "node35", "@target": "node36", "@id": "edge35", "@about": "#edge35"}, {"@length": 0.018155, "@source": "node35", "@target": "node37", "@id": "edge36", "@about": "#edge36"}, {"@length": 0.036593, "@source": "node28", "@target": "node38", "@id": "edge37", "@about": "#edge37", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:bootstrapValues", "@datatype": "xsd:int", "$": 100}]}, {"@length": 0.013749, "@source": "node38", "@target": "node39", "@id": "edge38", "@about": "#edge38"}, {"@length": 0.009175, "@source": "node38", "@target": "node40", "@id": "edge39", "@about": "#edge39"}, {"@length": 0.02905, "@source": "node27", "@target": "node41", "@id": "edge40", "@about": "#edge40", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:bootstrapValues", "@datatype": "xsd:int", "$": 100}]}, {"@length": 0.018224, "@source": "node41", "@target": "node42", "@id": "edge41", "@about": "#edge41"}, {"@length": 0.042625, "@source": "node41", "@target": "node43", "@id": "edge42", "@about": "#edge42"}, {"@length": 0.018132, "@source": "node5", "@target": "node6", "@id": "edge5", "@about": "#edge5", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:bootstrapValues", "@datatype": "xsd:int", "$": 100}]}, {"@length": 0.002541, "@source": "node6", "@target": "node7", "@id": "edge6", "@about": "#edge6", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:bootstrapValues", "@datatype": "xsd:int", "$": 84}]}, {"@length": 0.025709, "@source": "node7", "@target": "node8", "@id": "edge7", "@about": "#edge7"}, {"@length": 0.021922, "@source": "node7", "@target": "node9", "@id": "edge8", "@about": "#edge8"}, {"@length": 0.02735, "@source": "node6", "@target": "node10", "@id": "edge9", "@about": "#edge9"}, {"@length": 0.054068, "@source": "node4", "@target": "node44", "@id": "edge43", "@about": "#edge43"}], "@id": "tree2", "@about": "#tree2", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthDescription", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthMode", "@datatype": "xsd:string", "$": "ot:bootstrapValues"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthTimeUnit", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:curatedType", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:inGroupClade", "@datatype": "xsd:string", "$": "node5"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:nodeLabelDescription", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:nodeLabelMode", "@datatype": "xsd:string", "$": "ot:bootstrapValues"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:nodeLabelTimeUnit", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:outGroupEdge", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:specifiedRoot", "@datatype": "xsd:string", "$": "node4"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:unrootedTree", "@datatype": "xsd:boolean", "$": false}]}], "@about": "#trees1"}, "meta": [{"agent": [{"@description": "Open Tree NexSON validation", "@id": "peyotl-validator", "@name": "api.opentreeoflife.org/validate", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": [], "otherProperty": [{"name": "pythonVersion", "value": "2.7.16"}, {"name": "pythonImplementation", "value": "CPython"}]}, "@about": "#peyotl-validator"}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0", "@about": "#opentree-curation-webapp"}], "@xsi:type": "nex:LiteralMeta", "@property": "ot:agents"}, {"annotation": [{"@dateCreated": "2022-08-08T02:37:25.999Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"autoAcceptExactMatches": false, "searchContext": {"$": "Birds"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}]}, "useFuzzyMatching": false}, "refersTo": {"@top": {"$": "meta"}}}], "@about": "#otu-mapping-hints"}, {"@dateCreated": "2022-08-08T02:37:25.998Z", "@description": "Describes external namesets merged into this study", "@id": "merged-namesets-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "MERGED_NAMESET_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"namesets": {"nameset": []}}, "refersTo": {"@top": {"$": "meta"}}}], "@about": "#merged-namesets-metadata"}, {"@dateCreated": "2022-08-08T02:37:25.998Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": [{"@filename": "PASTED.nex", "@size": 7670, "@type": "nexus", "@url": "/curator/download/supporting_files.doc.89b51d617c17368d.5041535445442e6e6578.nex", "description": {"$": "Source data for tree(s) 'tree2'"}, "sourceForTree": [{"$": "tree2"}]}]}}, "refersTo": {"@top": {"$": "meta"}}}], "@about": "#supporting-files-metadata"}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "UNRECOGNIZED_KEY", "data": ["^ot:bootstrapValues"], "refersTo": {"@top": "trees", "@idref": "edge10", "@treesID": "trees1", "@treeID": "tree2", "@edgeID": "edge10"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:bootstrapValues"], "refersTo": {"@top": "trees", "@idref": "edge11", "@treesID": "trees1", "@treeID": "tree2", "@edgeID": "edge11"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:bootstrapValues"], "refersTo": {"@top": "trees", "@idref": "edge13", "@treesID": "trees1", "@treeID": "tree2", "@edgeID": "edge13"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:bootstrapValues"], "refersTo": {"@top": "trees", "@idref": "edge14", "@treesID": "trees1", "@treeID": "tree2", "@edgeID": "edge14"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:bootstrapValues"], "refersTo": {"@top": "trees", "@idref": "edge16", "@treesID": "trees1", "@treeID": "tree2", "@edgeID": "edge16"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:bootstrapValues"], "refersTo": {"@top": "trees", "@idref": "edge17", "@treesID": "trees1", "@treeID": "tree2", "@edgeID": "edge17"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:bootstrapValues"], "refersTo": {"@top": "trees", "@idref": "edge18", "@treesID": "trees1", "@treeID": "tree2", "@edgeID": "edge18"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:bootstrapValues"], "refersTo": {"@top": "trees", "@idref": "edge21", "@treesID": "trees1", "@treeID": "tree2", "@edgeID": "edge21"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:bootstrapValues"], "refersTo": {"@top": "trees", "@idref": "edge26", "@treesID": "trees1", "@treeID": "tree2", "@edgeID": "edge26"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:bootstrapValues"], "refersTo": {"@top": "trees", "@idref": "edge27", "@treesID": "trees1", "@treeID": "tree2", "@edgeID": "edge27"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:bootstrapValues"], "refersTo": {"@top": "trees", "@idref": "edge28", "@treesID": "trees1", "@treeID": "tree2", "@edgeID": "edge28"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:bootstrapValues"], "refersTo": {"@top": "trees", "@idref": "edge29", "@treesID": "trees1", "@treeID": "tree2", "@edgeID": "edge29"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:bootstrapValues"], "refersTo": {"@top": "trees", "@idref": "edge3", "@treesID": "trees1", "@treeID": "tree2", "@edgeID": "edge3"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:bootstrapValues"], "refersTo": {"@top": "trees", "@idref": "edge32", "@treesID": "trees1", "@treeID": "tree2", "@edgeID": "edge32"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:bootstrapValues"], "refersTo": {"@top": "trees", "@idref": "edge34", "@treesID": "trees1", "@treeID": "tree2", "@edgeID": "edge34"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:bootstrapValues"], "refersTo": {"@top": "trees", "@idref": "edge37", "@treesID": "trees1", "@treeID": "tree2", "@edgeID": "edge37"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:bootstrapValues"], "refersTo": {"@top": "trees", "@idref": "edge4", "@treesID": "trees1", "@treeID": "tree2", "@edgeID": "edge4"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:bootstrapValues"], "refersTo": {"@top": "trees", "@idref": "edge40", "@treesID": "trees1", "@treeID": "tree2", "@edgeID": "edge40"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:bootstrapValues"], "refersTo": {"@top": "trees", "@idref": "edge5", "@treesID": "trees1", "@treeID": "tree2", "@edgeID": "edge5"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:bootstrapValues"], "refersTo": {"@top": "trees", "@idref": "edge6", "@treesID": "trees1", "@treeID": "tree2", "@edgeID": "edge6"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node4", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node4"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelDescription", "^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit", "^ot:reasonsToExcludeFromSynthesis"], "refersTo": {"@top": "trees", "@idref": "tree2", "@treesID": "trees1", "@treeID": "tree2"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["rootedge"], "refersTo": {"@top": "trees", "@idref": "tree2", "@treesID": "trees1", "@treeID": "tree2"}, "@severity": "WARNING"}], "@about": "#peyotl-validator-event"}], "@xsi:type": "nex:LiteralMeta", "@property": "ot:annotationEvents"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:comment", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:curatorName", "@datatype": "xsd:string", "$": "Randy Posada"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:curatorName", "@datatype": "xsd:string", "$": "eliotmiller"}, {"@href": "", "@xsi:type": "nex:ResourceMeta", "@rel": "ot:dataDeposit"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:focalClade", "@datatype": "xsd:int", "$": 609798}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:focalCladeOTTTaxonName", "@datatype": "xsd:string", "$": "Apodiformes"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:studyId", "@datatype": "xsd:string", "$": "ot_2132"}, {"@href": "http://dx.doi.org/10.1016/j.ympev.2019.106611", "@xsi:type": "nex:ResourceMeta", "@rel": "ot:studyPublication"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:studyPublicationReference", "@datatype": "xsd:string", "$": "White, N. D., & Braun, M. J. (2019). Extracting phylogenetic signal from phylogenomic data: Higher-level relationships of the nightbirds (Strisores). Molecular Phylogenetics and Evolution, 141, 106611. https://doi.org/10.1016/j.ympev.2019.106611\n"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:studyYear", "@datatype": "xsd:int", "$": 2019}]}}, "branch2sha": {"master": "c33806c9ee11db205ee8c02a42e31b1c3128e299"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "e46368be7feac579c6d39c8ae5db66680057263b", "author_name": "eliotmiller", "author_email": "ANONYMOUS", "date": "Thu, 22 Dec 2022 14:44:09 +0000", "date_ISO_8601": "2022-12-22 14:44:09 +0000", "relative_date": "3 years, 4 months ago", "message_subject": "Update document 'ot_2132' via OpenTree API"}, {"id": "c99a4a3c32a3250322188d575f7668718d61ed99", "author_name": "eliotmiller", "author_email": "ANONYMOUS", "date": "Thu, 22 Dec 2022 14:43:14 +0000", "date_ISO_8601": "2022-12-22 14:43:14 +0000", "relative_date": "3 years, 4 months ago", "message_subject": "Update document 'ot_2132' via OpenTree API"}, {"id": "181b01d4a2778bca54b98d35f09705604ea16dac", "author_name": "Randy Posada", "author_email": "ANONYMOUS", "date": "Tue, 9 Aug 2022 00:14:13 +0000", "date_ISO_8601": "2022-08-09 00:14:13 +0000", "relative_date": "3 years, 8 months ago", "message_subject": "Mapped Taxons", "message_body": "One genus \"Phyllaemulor\" is not in the synthetic tree but I believe it is used now instead of the genus mentioned in the tree curation. Therefore only 22/23 of the OTUs have been mapped.\n\n(Update document 'ot_2132' via OpenTree API)"}, {"id": "cf205a9e8140ffd0633439ca8766f4fa50c0e121", "author_name": "Randy Posada", "author_email": "ANONYMOUS", "date": "Tue, 9 Aug 2022 00:08:01 +0000", "date_ISO_8601": "2022-08-09 00:08:01 +0000", "relative_date": "3 years, 8 months ago", "message_subject": "Finalizing Tree properties", "message_body": "Tree D4IU was confirmed by the corresponding author to be the tree that most accurately represents the study.\n\n(Update document 'ot_2132' via OpenTree API)"}, {"id": "8a4ea0292fee6cd4e9749e51c9be30c69f7f442e", "author_name": "Randy Posada", "author_email": "ANONYMOUS", "date": "Mon, 8 Aug 2022 02:43:11 +0000", "date_ISO_8601": "2022-08-08 02:43:11 +0000", "relative_date": "3 years, 8 months ago", "message_subject": "Adding Figure 6 tree", "message_body": "(Update document 'ot_2132' via OpenTree API)"}, {"id": "ccf4025ebd938caaa738a90652cd38c87ed382f5", "author_name": "Randy Posada", "author_email": "ANONYMOUS", "date": "Mon, 8 Aug 2022 02:37:24 +0000", "date_ISO_8601": "2022-08-08 02:37:24 +0000", "relative_date": "3 years, 8 months ago", "message_subject": "Update document 'ot_2132' via OpenTree API"}]}