pythonVersion 2.7.16 pythonImplementation CPython false Birds false Source data for tree(s) 'tree1' tree1 otu104 otu80 otu162 otu163 otu29 otu30 otu93 otu95 ^ot:comment highestMintedElementIDs ^ot:branchLengthTimeUnit ^ot:nodeLabelMode ^ot:nodeLabelTimeUnit ^ot:reasonsToExcludeFromSynthesis ^ot:ottId eliotmiller Emily Jane McTavish jwaterford 1041547 Passeriformes ot_2143 Päckert, M., Favre, A., Schnitzler, J., Martens, J., Sun, Y., Tietze, D. T., Hailer, F., Michalak, I., & Strutzenberger, P. (2020). “Into and Out of” the Qinghai‐Tibet Plateau and the Himalayas: Centers of origin and diversification across five clades of Eurasian montane and alpine passerine birds. Ecology and Evolution, 10(17), 9283–9300. Portico. https://doi.org/10.1002/ece3.6615 2020 Acanthisitta chloris 1085740 Acanthisitta chloris Emberiza affinis 995746 Emberiza affinis Carpodacus thura 157599 Carpodacus thura Carpodacus trifasciatus 815421 Carpodacus trifasciatus Carpodacus verreauxii 3597378 Carpodacus verreauxii Carpodacus vinaceus 277037 Carpodacus vinaceus Carpodacus waltoni 6153321 Carpodacus waltoni Chaunoproctus ferreorostris 242220 Chaunoproctus ferreorostris Chlorophonia cyanea 1031948 Chlorophonia cyanea Coccothraustes coccothraustes 1083711 Coccothraustes coccothraustes Coccothraustes vespertinus 518149 Hesperiphona vespertina Eophona migratoria 341465 Eophona migratoria Emberiza aureola 45309 Schoeniclus aureolus Eophona personata 341474 Eophona personata Euphonia cayennensis 1031946 Euphonia cayennensis Euphonia chlorotica 885153 Euphonia chlorotica Euphonia finschi 998124 Euphonia finschi Euphonia fulvicrissa 761503 Euphonia fulvicrissa Euphonia laniirostris 495433 Euphonia laniirostris Euphonia minuta 917117 Euphonia minuta Euphonia musica 198161 Euphonia musica Euphonia rufiventris 1031942 Euphonia rufiventris Euphonia violacea 699786 Euphonia violacea Emberiza bruniceps 178473 Emberiza bruniceps Euphonia xanthogaster 1031954 Euphonia xanthogaster Fringilla coelebs 828694 Fringilla coelebs Fringilla montifringilla 28332 Fringilla montifringilla Geospiza conirostris 589953 Geospiza conirostris Geospiza difficilis 419376 Geospiza difficilis Geospiza fortis 589951 Geospiza fortis Geospiza fuliginosa 589956 Geospiza fuliginosa Geospiza magnirostris 589955 Geospiza magnirostris Geospiza scandens 589959 Geospiza scandens Haematospiza sipahi 341467 Haematospiza sipahi Emberiza buchanani 846937 Emberiza buchanani Haemorhous cassinii 664801 Haemorhous cassinii Haemorhous mexicanus 711865 Haemorhous mexicanus Haemorhous purpureus 641497 Haemorhous purpureus Hemignathus virens 157610 Hemignathus virens Leucosticte arctoa 178457 Leucosticte arctoa Leucosticte atrata 827285 Leucosticte atrata Leucosticte australis 235456 Leucosticte australis Leucosticte brandti 995755 Leucosticte brandti Leucosticte nemoricola 235457 Leucosticte nemoricola Leucosticte tephrocotis 236657 Leucosticte tephrocotis Emberiza cabanisi 846938 Emberiza cabanisi Linurgus olivaceus 657543 Linurgus olivaceus Loxia curvirostra 298778 Loxia curvirostra Loxia leucoptera 1060528 Loxia leucoptera Loxia pytyopsittacus 438238 Loxia pytyopsittacus Loxia scotica 682433 Loxia scotica Loxioides bailleui 221897 Loxioides bailleui Mycerobas affinis 947027 Mycerobas affinis Mycerobas carnipes 341476 Mycerobas carnipes Mycerobas icterioides 3597383 Mycerobas icterioides Mycerobas melanozanthos 3597382 Mycerobas melanozanthos Emberiza caesia 679086 Emberiza caesia Paroreomyza montana 823298 Paroreomyza montana Pinicola enucleator 341471 Pinicola enucleator Pyrrhoplectes epauletta 550156 Pyrrhoplectes epauletta Pyrrhula aurantiaca 977520 Pyrrhula aurantiaca Pyrrhula erythacaerythaca 653290 Pyrrhula erythaca erythaca Pyrrhula erythacaowstoni 368828 Pyrrhula erythaca owstoni Pyrrhula erythrocephala 901358 Pyrrhula erythrocephala Pyrrhula leucogenisleucogenis 1009956 Pyrrhula leucogenis leucogenis Pyrrhula leucogenissteerei 351893 Pyrrhula leucogenis steerei Pyrrhula murina 927470 Pyrrhula murina Emberiza calandra 6520265 Emberiza calandra Pyrrhula nipalensis 815423 Pyrrhula nipalensis Pyrrhula pyrrhulacineracea 526863 Pyrrhula pyrrhula cineracea Pyrrhula pyrrhulaeuropoea Pyrrhula pyrrhulagriseiventris Rhodopechys sanguineus 1031938 Rhodopechys sanguineus Rhodospiza obsoleta 1076199 Rhodospiza obsoleta Rhynchostruthus socotranus 455541 Rhynchostruthus socotranus Serinus alario 471169 Serinus alario Serinus albogularis 238143 Serinus albogularis Serinus atrogularis 328905 Serinus atrogularis Emberiza capensis 679088 Emberiza capensis Serinus burtoni 318589 Crithagra burtoni Serinus canaria 464865 Serinus canaria Serinus canicollis 903284 Serinus canicollis Serinus citrinella 119724 Carduelis citrinella Serinus citrinelloides 328908 Crithagra citrinelloides Serinus citrinipectus 328906 Serinus citrinipectus Serinus corsicanus 119725 Carduelis corsicana Serinus dorsostriatus 903274 Serinus dorsostriatus Serinus estherae 455544 Serinus estherae Serinus flaviventris 903271 Crithagra flaviventris Emberiza chrysophrys 846941 Emberiza chrysophrys Serinus flavivertex 969217 Serinus flavivertex Serinus gularis 903272 Serinus gularis Serinus leucopygius 559271 Serinus leucopygius Serinus mennelli 901362 Serinus mennelli Serinus mozambicus 1083721 Crithagra mozambica Serinus pusillus 328909 Serinus pusillus Serinus rufobrunneus 455546 Crithagra rufobrunnea Serinus scotops 760388 Serinus scotops Serinus serinus 1083724 Serinus serinus Serinus striolatus 471172 Serinus striolatus Emberiza ciacia 519722 Emberiza cia cia Serinus sulphuratus 903281 Crithagra sulphurata Serinus syriacus 399225 Serinus syriacus Serinus thibetanus 903269 Serinus thibetanus Serinus totta 399227 Serinus totta Spinus atratus 637971 Spinus atratus Spinus atriceps 3597384 Spinus atriceps Spinus barbatus 637970 Spinus barbatus Spinus crassirostris 559268 Spinus crassirostris Spinus cucullatus 1047669 Spinus cucullatus Spinus dominicensis 3597390 Spinus dominicensis Bombycilla garrulus 613881 Bombycilla garrulus Emberiza ciaflemingorum 5861434 Emberiza cia flemingorum Spinus lawrencei 913590 Spinus lawrencei Spinus magellanicus 38571 Spinus magellanicus Spinus notatus 559258 Spinus notatus Spinus olivaceus 238138 Spinus olivaceus Spinus pinus 559264 Spinus pinus Spinus psaltria 957575 Spinus psaltria Spinus spinescens 559266 Spinus spinescens Spinus spinus 167338 Spinus spinus Spinus tristis 559260 Spinus tristis Spinus xanthogastrus 381385 Spinus xanthogastrus Emberiza cineracea 699946 Emberiza cineracea Spinus yarellii 6375 Spinus yarrellii Sturnella superciliaris 7661299 Leistes superciliaris Anthus trivialis 695340 Anthus trivialis Motacilla alba 695336 Motacilla alba Motacilla citreola 842438 Motacilla citreola Arachnothera longirostra 865549 Arachnothera longirostra Arachnothera magna 842501 Arachnothera magna Cinnyris asiaticus 4131399 Cinnyris asiaticus Cacatua sulphurea 290348 Cacatua sulphurea Falco subbuteo 137527 Falco subbuteo Emberiza cioides 367092 Emberiza cioides Nestor notabilis 749203 Nestor notabilis Dendroica virens 1014098 Setophaga virens Parula pitiayumi 956236 Setophaga pitiayumi Montifringilla adamsi 96149 Montifringilla adamsi Montifringilla n alpicola 567983 Montifringilla nivalis Pyrgilauda blanfordi 871308 Pyrgilauda blanfordi Pyrgilauda davidiana 96152 Montifringilla davidiana Montifringilla henrici 96147 Montifringilla henrici Montifringilla n nivalis 96148 Montifringilla nivalis nivalis Pyrgilauda ruficollis 885160 Montifringilla ruficollis Emberiza cirlus 845178 Emberiza cirlus Onychostruthus taczanowskii 96150 Montifringilla taczanowskii Passer ammodendri 407763 Passer ammodendri Passer diffusus 3597488 Passer diffusus Passer domesticus 745175 Passer domesticus Passer eminibey 3597491 Passer eminibey Passer flaveolus 407764 Passer flaveolus Passer griseusgongonensis 3597494 Passer gongonensis Passer griseusgriseus 407761 Passer griseus Passer hispaniolensis 9416 Passer hispaniolensis Passer iagoensis 3597487 Passer iagoensis Emberiza citrinella 828708 Emberiza citrinella Passer italiae 995847 Passer italiae Passer luteus 710451 Passer luteus Passer melanurus 407762 Passer melanurus Passer motitensis 3597483 Passer motitensis Passer montanus 44870 Passer montanus Passer rutilans 7661508 Passer cinnamomeus Petronia dentata 749634 Gymnoris dentata Petronia petroniabrevirostris 407760 Petronia petronia Petronia petroniapetronia 7068473 Petronia petronia petronia Petronia superciliaris 3597469 Gymnoris superciliaris Emberiza eleganselegans 519716 Schoeniclus elegans elegans Petronia xanthocollis 3597468 Gymnoris xanthocollis Peucedramus taeniatus 370807 Peucedramus taeniatus Ploceus philippinus 865477 Ploceus philippinus Promerops cafer 843515 Promerops cafer Promerops gurneyi 638686 Promerops gurneyi Prunella atrogularis 626446 Prunella atrogularis Prunella collariserythropygia 5223339 Prunella collaris erythropygia Prunella collarismontana 5223338 Prunella collaris montana Prunella collaristibetana 699625 Prunella collaris Prunella fagani 3597472 Prunella fagani Emberiza eleganselegantula 5861123 Schoeniclus elegans elegantulus Prunella fulvescens 795160 Prunella fulvescens Prunella himalayana 795159 Prunella himalayana Prunella immaculata 3597475 Prunella immaculata Prunella koslowi 3597477 Prunella koslowi Prunella modularis 875990 Prunella modularis Prunella montanella 95302 Prunella montanella Prunella ocularis 3597476 Prunella ocularis Prunella rubeculoides 3597473 Prunella rubeculoides Prunella rubida 795158 Prunella rubida Prunella strophiata 3597474 Prunella strophiata Emberiza flaviventris 536142 Emberiza flaviventris Camarhynchus pallidus 963505 Camarhynchus pallidus Camarhynchus parvulus 419367 Camarhynchus parvulus Camarhynchus pauper 422530 Camarhynchus pauper Camarhynchus psittacula 419363 Camarhynchus psittacula Certhidea fusca 527327 Certhidea fusca Certhidea olivacea 589949 Certhidea olivacea Pinaroloxias inornata 992256 Pinaroloxias inornata Platyspiza crassirostris 589943 Platyspiza crassirostris Thraupis palmarum 516965 Tangara palmarum Urocynchramus pylzowi 469177 Urocynchramus pylzowi Emberiza fucata 802893 Emberiza fucata Emberiza godlewskiiNorth 972940 Emberiza godlewskii Cyanocompsa cyanoides 486842 Cyanoloxia cyanoides Emberiza godlewskiiSouth 972940 Emberiza godlewskii Emberiza goslingi 5267033 Fringillaria goslingi Emberiza hortulana 145223 Emberiza hortulana Emberiza impetuani 679099 Fringillaria impetuani Emberiza jankowskii 679102 Emberiza jankowskii Emberiza koslowi 3597245 Emberiza koslowi Emberiza lathami 922666 Melophus lathami Emberiza leucocephalos 46691 Emberiza leucocephalos Emberiza melanocephala 178468 Emberiza melanocephala Emberiza pallasi 1018614 Emberiza pallasi Passerina cyanea 939942 Passerina cyanea Emberiza poliopleura 3597241 Fringillaria poliopleura Emberiza pusilla 340338 Emberiza pusilla Emberiza rustica 28343 Schoeniclus rusticus Emberiza rutila 124457 Emberiza rutila Emberiza sahari 3597240 Emberiza sahari Emberiza schoeniclus 711856 Emberiza schoeniclus Emberiza siemsseni 516969 Schoeniclus siemsseni Emberiza socotrana 3597242 Emberiza socotrana Emberiza spodocephalapersonata 5861126 Schoeniclus spodocephala personatus Emberiza spodocephalaspodocephala 1097114 Schoeniclus spodocephala spodocephala Coereba flaveola 419369 Coereba flaveola Emberiza stewarti 972937 Emberiza stewarti Emberiza striolata 516966 Fringillaria striolata Emberiza sulphurata 1094118 Emberiza sulphurata Emberiza tahapisi 1094120 Fringillaria tahapisi Emberiza tristrami 441576 Emberiza tristrami Emberiza variabilis 28339 Emberiza variabilis Emberiza yessoensis 1094092 Schoeniclus yessoensis Junco hyemalis 989502 Junco hyemalis Passerculus sandwichensis 453758 Passerculus sandwichensis Plectrophenax mccownii 948132 Calcarius mccownii Ammodramus humeralis 1027172 Ammodramus humeralis Plectrophenax nivalis 453764 Plectrophenax nivalis Zonotrichia albicollis 265547 Zonotrichia albicollis Zonotrichia leucophrys 265553 Zonotrichia leucophrys Bucanetes githagineus 59188 Bucanetes githagineus Bucanetes mongolicus 235463 Eremopsaltria mongolica Callacanthis burtoni 405220 Callacanthis burtoni Cardinalis cardinalis 307364 Cardinalis cardinalis Carduelis ambigua 957580 Chloris ambigua Carduelis cannabina 637969 Linaria cannabina Carduelis carduelis 1083719 Carduelis carduelis Calcarius lapponicus 420995 Calcarius lapponicus Carduelis chloris 1083715 Chloris chloris Carduelis flammea 38566 Acanthis flammea Carduelis flavirostris 6379 Linaria flavirostris Carduelis hornemanni 6367 Acanthis hornemanni Carduelis monguilloti 405215 Chloris monguilloti Carduelis sinica 28346 Chloris sinica Carduelis spinoides 559262 Chloris spinoides Carpodacus davidianus 3597375 Carpodacus davidianus Carpodacus dubius 3597376 Carpodacus dubius Carpodacus edwardsii 473006 Carpodacus edwardsii Calcarius ornatus 765406 Calcarius ornatus Carpodacus eos 6153321 Carpodacus waltoni Carpodacus erythrinus 815418 Carpodacus erythrinus Carpodacus formosanus 977524 Carpodacus formosanus Carpodacus grandis 3597377 Carpodacus grandis Carpodacus nipalensis 815420 Carpodacus nipalensis Carpodacus pulcherrimus 563259 Carpodacus pulcherrimus Carpodacus puniceus 473007 Carpodacus puniceus Carpodacus rhodochlamys 405217 Carpodacus rhodochlamys Carpodacus rhodochroa 747629 Carpodacus rodochroa Carpodacus rhodopeplus 277039 Carpodacus rodopeplus Calcarius pictus 1002233 Calcarius pictus Carpodacus roborowskii 405224 Kozlowia roborowskii Carpodacus roseus 815419 Carpodacus roseus Carpodacus rubescens 242207 Carpodacus rubescens Carpodacus rubicilla 235455 Carpodacus rubicilla Carpodacus rubicilloides 815422 Carpodacus rubicilloides Carpodacus severtzovi 235455 Carpodacus rubicilla Carpodacus sibiricus 253382 Uragus sibiricus Carpodacus stoliczkae 6153320 Carpodacus stoliczkae Carpodacus subhimachalus 1031951 Pinicola subhimachala Carpodacus synoicus 873486 Carpodacus synoicus ot:undefined node7 node1 false true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true 0 0 556 0 557 279 1 1 1