pythonVersion 2.7.16 pythonImplementation CPython false Birds $1 ^(\S*\s+\S*).* false Source data for tree(s) 'tree1' tree1 otu10 otu11 otu100 otu101 otu102 otu103 otu96 otu97 otu98 otu99 otu105 otu106 otu108 otu109 otu110 otu111 otu112 otu113 otu114 otu115 otu116 otu117 otu118 otu119 otu120 otu121 otu122 otu12 otu13 otu14 otu125 otu126 otu127 otu128 otu129 otu130 otu131 otu16 otu17 otu18 otu19 otu20 otu21 otu22 otu23 otu24 otu25 otu26 otu27 otu28 otu29 otu30 otu31 otu32 otu33 otu34 otu3 otu4 otu5 otu6 otu7 otu35 otu36 otu37 otu38 otu39 otu40 otu41 otu42 otu43 otu44 otu45 otu46 otu47 otu48 otu49 otu50 otu51 otu52 otu53 otu54 otu55 otu56 otu58 otu59 otu60 otu61 otu62 otu63 otu64 otu65 otu66 otu67 otu68 otu69 otu70 otu71 otu72 otu73 otu75 otu76 otu77 otu78 otu79 otu80 otu81 otu8 otu9 otu83 otu84 otu85 otu86 otu87 otu88 otu89 otu90 otu91 otu92 otu93 otu94 otu95 ^ot:comment ^ot:nodeLabelMode ^ot:nodeLabelTimeUnit ^ot:reasonsToExcludeFromSynthesis eliotmiller 594197 Odontophoridae ot_2183 Salter, J. F., Hosner, P. A., Tsai, W. L. E., McCormack, J. E., Braun, E. L., Kimball, R. T., Brumfield, R. T., & Faircloth, B. C. (2022). Historical specimens and the limits of subspecies phylogenomics in the New World quails (Odontophoridae). Molecular Phylogenetics and Evolution, 175, 107559. https://doi.org/10.1016/j.ympev.2022.107559 2022 anas platyrhynchos 765167 Anas platyrhynchos callipepla gambelii fulvipectus 90862 340887 Callipepla gambelii odontophorus gujanensis medius 14437 329457 Odontophorus gujanensis odontophorus gujanensis pachyrhynchus 11238 329457 Odontophorus gujanensis odontophorus gujanensis rufogularis 40408 329457 Odontophorus gujanensis odontophorus gujanensis simonsi 15196 329457 Odontophorus gujanensis odontophorus guttatus 4312 3595992 Odontophorus guttatus odontophorus hyperythrus 418804 3595997 Odontophorus hyperythrus odontophorus hyperythrus 54500 3595997 Odontophorus hyperythrus odontophorus leucolaemus 652312 594190 Odontophorus leucolaemus odontophorus melanonotus 414494 3595996 Odontophorus melanonotus odontophorus melanonotus 419577 3595996 Odontophorus melanonotus callipepla gambelii gambelii 62399 340887 Callipepla gambelii odontophorus melanotis melanotis 412694 3595990 Odontophorus melanotis odontophorus melanotis verecundus 31069 3595990 Odontophorus melanotis odontophorus speciosus loricatus 433045 329460 Odontophorus speciosus odontophorus speciosus soderstromii 42447 329460 Odontophorus speciosus odontophorus speciosus speciosus 43621 329460 Odontophorus speciosus odontophorus stellatus 27503 3595999 Odontophorus stellatus odontophorus stellatus 9314 3595999 Odontophorus stellatus odontophorus strophium 176521 3595998 Odontophorus strophium odontophorus strophium 181791 3595998 Odontophorus strophium oreortyx pictus confinis 59654 676779 Oreortyx pictus callipepla squamata castanogastris 64166 728092 Callipepla squamata oreortyx pictus pictus 66924 676779 Oreortyx pictus oreortyx pictus plumifer 86733 676779 Oreortyx pictus oreortyx pictus russellii 6421 676779 Oreortyx pictus oxyura jamaicensis 88378 Oxyura jamaicensis philortyx fasciatus 27429 3596012 Philortyx fasciatus ptilopachus nahani 67857 554512 Francolinus nahani ptilopachus nahani 75763 554512 Francolinus nahani ptilopachus petrosus brehmi 41663 867023 Ptilopachus petrosus ptilopachus petrosus florentiae 80630 867023 Ptilopachus petrosus ptilopachus petrosus major 68965 867023 Ptilopachus petrosus callipepla squamata pallida 77730 728092 Callipepla squamata rhyncortyx cinctus australis 29992 3596005 Rhynchortyx cinctus rhyncortyx cinctus cinctus 1389 3596005 Rhynchortyx cinctus callipepla squamata squamata 29970 728092 Callipepla squamata chauna torquata 860132 Chauna torquata colinus cristatus badius 419219 520556 Colinus cristatus colinus cristatus barnesi 325203 520556 Colinus cristatus colinus cristatus bogotensis 103888 520556 Colinus cristatus colinus cristatus cristatus 414969 520556 Colinus cristatus anseranas semipalmata 714464 Anseranas semipalmata colinus cristatus decoratus 22004 520556 Colinus cristatus colinus cristatus horvathi 400048 520556 Colinus cristatus colinus cristatus leucotis 419663 520556 Colinus cristatus colinus cristatus littoralis 386764 520556 Colinus cristatus colinus cristatus mariae 400209 520556 Colinus cristatus colinus cristatus mocquerysi 35924 520556 Colinus cristatus colinus cristatus panamensis 233102 520556 Colinus cristatus colinus cristatus parvicristatus 425597 520556 Colinus cristatus colinus cristatus sonnini 391236 520556 Colinus cristatus colinus leucopogon dickeyi 80996 3596003 Colinus leucopogon callipepla californica achrustera 81488 340882 Callipepla californica colinus leucopogon hypoleucus 52857 3596003 Colinus leucopogon colinus leucopogon incanus 813158 3596003 Colinus leucopogon colinus leucopogon leucopogon 103378 3596003 Colinus leucopogon colinus leucopogon leylandi 30517 3596003 Colinus leucopogon colinus leucopogon sclateri 371183 3596003 Colinus leucopogon colinus nigrogularis caboti 18476 3596004 Colinus nigrogularis colinus nigrogularis nigrogularis 21000 3596004 Colinus nigrogularis colinus nigrogularis persiccus 577 3596004 Colinus nigrogularis colinus virginianus virginianus 204709 Colinus virginianus colinus virginianus aridus 77830 204709 Colinus virginianus callipepla californica brunnescens 29626 340882 Callipepla californica colinus virginianus atriceps 50749 204709 Colinus virginianus colinus virginianus coyoleos 30512 204709 Colinus virginianus colinus virginianus cubanensis 371181 204709 Colinus virginianus colinus virginianus floridanus 48982 204709 Colinus virginianus colinus virginianus godmani 768798 204709 Colinus virginianus colinus virginianus graysoni 573690 204709 Colinus virginianus colinus virginianus harrisoni 16994 204709 Colinus virginianus colinus virginianus insignis 30515 204709 Colinus virginianus colinus virginianus maculatus 415417 204709 Colinus virginianus colinus virginianus minor 8855 204709 Colinus virginianus callipepla californica californica 17959 340882 Callipepla californica colinus virginianus nigripectus 7776 204709 Colinus virginianus colinus virginianus pectoralis 23722 204709 Colinus virginianus colinus virginianus ridgwayi 70184 204709 Colinus virginianus colinus virginianus salvini 80966 204709 Colinus virginianus colinus virginianus taylori 62466 204709 Colinus virginianus colinus virginianus texanus 54856 204709 Colinus virginianus colinus virginianus thayeri 45784 204709 Colinus virginianus coturnix japonica 463188 803622 Coturnix japonica cyrtonyx montezumae mearnsi 45132 204716 Cyrtonyx montezumae cyrtonyx montezumae merriami 804738 204716 Cyrtonyx montezumae callipepla californica canfieldae 34531 340882 Callipepla californica cyrtonyx montezumae montezumae 22602 204716 Cyrtonyx montezumae cyrtonyx montezumae rowleyi 19138 204716 Cyrtonyx montezumae cyrtonyx montezumae sallei 778476 204716 Cyrtonyx montezumae cyrtonyx ocellatus 4315 3596002 Cyrtonyx ocellatus cyrtonyx ocellatus 56792 3596002 Cyrtonyx ocellatus dactylortyx thoracicus chiapensis 30054 3596014 Dactylortyx thoracicus dactylortyx thoracicus conoveri 412668 3596014 Dactylortyx thoracicus dactylortyx thoracicus devius 4577 3596014 Dactylortyx thoracicus dactylortyx thoracicus dolichonyx 36952 3596014 Dactylortyx thoracicus dactylortyx thoracicus fuscus 412669 3596014 Dactylortyx thoracicus callipepla californica catalinensis 19812 340882 Callipepla californica dactylortyx thoracicus melodus 45995 3596014 Dactylortyx thoracicus dactylortyx thoracicus paynteri 13023 3596014 Dactylortyx thoracicus dactylortyx thoracicus pettingilli 38766 3596014 Dactylortyx thoracicus dactylortyx thoracicus sharpei 215965 3596014 Dactylortyx thoracicus dendrortyx barbatus 24556 3596011 Dendrortyx barbatus dendrortyx leucophrys hypospodius 53075 3596007 Dendrortyx leucophrys dendrortyx leucophrys leucophrys 26402 3596007 Dendrortyx leucophrys dendrortyx macroura diversus 4576 3596009 Dendrortyx macroura dendrortyx macroura griseipectus 30358 3596009 Dendrortyx macroura dendrortyx macroura inesperatus 46105 3596009 Dendrortyx macroura callipepla douglasii bensoni 59474 340885 Callipepla douglasii dendrortyx macroura macroura 46880 3596009 Dendrortyx macroura dendrortyx macroura oaxacae 65301 3596009 Dendrortyx macroura gallus gallus 153563 Gallus gallus odontophorus atrifrons atrifrons 405057 3595995 Odontophorus atrifrons odontophorus atrifrons navai 372441 3595995 Odontophorus atrifrons odontophorus atrifrons variegatus 40827 3595995 Odontophorus atrifrons odontophorus balliviani 21312 3595991 Odontophorus balliviani odontophorus balliviani 38340 3595991 Odontophorus balliviani odontophorus capueira capueira 66400 329467 Odontophorus capueira odontophorus capueira plumbeicollis 395742 329467 Odontophorus capueira callipepla douglasii douglasii 81316 340885 Callipepla douglasii odontophorus columbianus 408566 3595994 Odontophorus columbianus odontophorus columbianus 483540 3595994 Odontophorus columbianus odontophorus dialeucos 484271 3596000 Odontophorus dialeucos odontophorus dialeucos 484272 3596000 Odontophorus dialeucos odontophorus erythrops erythrops 7868 3596001 Odontophorus erythrops odontophorus erythrops parambae 1412 3596001 Odontophorus erythrops odontophorus gujanensis buckleyi 186791 329457 Odontophorus gujanensis odontophorus gujanensis castigatus 408884 329457 Odontophorus gujanensis odontophorus gujanensis gujanensis 35494 329457 Odontophorus gujanensis odontophorus gujanensis marmoratus 40594 329457 Odontophorus gujanensis ot:undefined Maximum likelihood node13 node1 false true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true 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