{"sha": "6bed60428352c04d00341ad513a8efb9442e4d8a", "data": {"nexml": {"@about": "#study", "@generator": "Open Tree API", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xhtml": "http://www.w3.org/1999/xhtml/vocab#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "Open Tree NexSON validation", "@id": "peyotl-validator", "@name": "api.opentreeoflife.org/validate", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": [], "otherProperty": [{"name": "pythonVersion", "value": "3.10.12"}, {"name": "pythonImplementation", "value": "CPython"}]}}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0"}]}, "^ot:annotationEvents": {"annotation": [{"@dateCreated": "2024-01-31T10:16:41.708Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"autoAcceptExactMatches": false, "searchContext": {"$": "All life"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}]}, "useFuzzyMatching": true}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2024-01-31T10:16:41.708Z", "@description": "Describes external namesets merged into this study", "@id": "merged-namesets-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "MERGED_NAMESET_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"namesets": {"nameset": []}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2024-01-31T10:16:41.708Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": [{"@filename": "Kim2014.nwk", "@size": 78, "@type": "newick", "@url": "/curator/download/supporting_files.doc.8cd54e7c36e05b59.4b696d323031342e6e776b.nwk", "description": {"$": "Source data for tree(s) 'tree1'"}, "sourceForTree": [{"$": "tree1"}]}]}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["highestMintedElementIDs"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:branchLengthTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit", "^ot:reasonsToExcludeFromSynthesis"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": [], "^ot:comment": "", "^ot:curatorName": ["ElenaKochanova"], "^ot:dataDeposit": {"@href": ""}, "^ot:focalCladeOTTTaxonName": "", "^ot:otusElementOrder": ["otus1"], "^ot:studyId": "ot_2297", "^ot:studyPublication": {"@href": "http://dx.doi.org/10.2988/0006-324x-127.1.248"}, "^ot:studyPublicationReference": "Kim, K., Trebukhova, Y., Lee, W., & Karanovic, T. (2014). A new species ofEnhydrosoma(Copepoda: Harpacticoida: Cletodidae) from Korea, with redescription ofE. intermediaand establishment of a new genus. Proceedings of the Biological Society of Washington, 127(1), 248\u2013283. https://doi.org/10.2988/0006-324x-127.1.248\n", "^ot:studyYear": 2014, "^ot:tag": [], "^ot:treesElementOrder": ["trees1"], "highestMintedElementIDs": {"agent": 0, "annotation": 0, "edge": 6, "message": 0, "node": 7, "otu": 4, "otus": 2, "tree": 1, "trees": 2}, "otusById": {"otus1": {"otuById": {"otu1": {"^ot:originalLabel": "Enhydrosoma coreana", "^ot:ottId": 5781549, "^ot:ottTaxonName": "Enhydrosoma coreana"}, "otu2": {"^ot:originalLabel": "Stylicletodes sp", "^ot:ottId": 2949668, "^ot:ottTaxonName": "Stylicletodes"}, "otu3": {"^ot:originalLabel": "Enhydrosoma intermedia", "^ot:ottId": 2949680, "^ot:ottTaxonName": "Geehydrosoma intermedia"}, "otu4": {"^ot:originalLabel": "Coullana sp", "^ot:ottId": 41180, "^ot:ottTaxonName": "Coullana"}}}}, "treesById": {"trees1": {"@otus": "otus1", "^ot:treeElementOrder": ["tree1"], "treeById": {"tree1": {"@label": "Fig.20", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:undefined", "^ot:curatedType": "Maximum likelihood ", "^ot:inGroupClade": "node2", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:reasonsToExcludeFromSynthesis": [], "^ot:rootNodeId": "node1", "^ot:specifiedRoot": "node1", "^ot:tag": [], "^ot:unrootedTree": false, "edgeBySourceId": {"node1": {"edge1": {"@source": "node1", "@target": "node2"}, "edge6": {"@source": "node1", "@target": "node7"}}, "node2": {"edge2": {"@source": "node2", "@target": "node3"}, "edge5": {"@source": "node2", "@target": "node6"}}, "node3": {"edge3": {"@source": "node3", "@target": "node4"}, "edge4": {"@source": "node3", "@target": "node5"}}}, "nodeById": {"node1": {"@root": true}, "node2": {}, "node3": {}, "node4": {"@otu": "otu1"}, "node5": {"@otu": "otu2"}, "node6": {"@otu": "otu3"}, "node7": {"@otu": "otu4"}}}}}}}}, "branch2sha": {"master": "6bed60428352c04d00341ad513a8efb9442e4d8a"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "eb0f2a7ed7507ee828816a4015571f88d71757a1", "author_name": "ElenaKochanova", "author_email": "ANONYMOUS", "date": "Wed, 31 Jan 2024 10:18:38 +0000", "date_ISO_8601": "2024-01-31 10:18:38 +0000", "relative_date": "2 years, 2 months ago", "message_subject": "Update document 'ot_2297' via OpenTree API"}, {"id": "38b3ab78ec4686a2a5c5f5c2534e64ddef6a793e", "author_name": "ElenaKochanova", "author_email": "ANONYMOUS", "date": "Wed, 31 Jan 2024 10:16:39 +0000", "date_ISO_8601": "2024-01-31 10:16:39 +0000", "relative_date": "2 years, 2 months ago", "message_subject": "Update document 'ot_2297' via OpenTree API"}]}