{"sha": "2aa180baef3c5e313da1e7f09c83ce2c0467b457", "data": {"nexml": {"@about": "#study", "@generator": "Open Tree API", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xhtml": "http://www.w3.org/1999/xhtml/vocab#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "Open Tree NexSON validation", "@id": "peyotl-validator", "@name": "api.opentreeoflife.org/validate", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": [], "otherProperty": [{"name": "pythonVersion", "value": "3.10.12"}, {"name": "pythonImplementation", "value": "CPython"}]}}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0"}]}, "^ot:annotationEvents": {"annotation": [{"@dateCreated": "2025-02-17T23:59:03.110Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"autoAcceptExactMatches": true, "searchContext": {"$": "Arthropods"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}]}, "useFuzzyMatching": false}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2025-02-17T23:59:03.110Z", "@description": "Describes external namesets merged into this study", "@id": "merged-namesets-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "MERGED_NAMESET_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"namesets": {"nameset": []}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2025-02-17T23:59:03.110Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": [{"@filename": "DeoliveiraZeppelini2024Oncopodura.nwk", "@size": 1117, "@type": "newick", "@url": "/curator/download/supporting_files.doc.9e82f334fec5bb2e.44656f6c6976656972615a657070656c696e69323032344f6e636f706f647572612e6e776b.nwk", "description": {"$": "Source data for tree(s) 'tree1'"}, "sourceForTree": [{"$": "tree1"}]}, {"@filename": "image.png", "@size": 636, "@type": "", "@url": "/curator/supporting_files/download/supporting_files.doc.8d2c34590b3caa07.696d6167652e706e67.png", "description": {"$": ""}, "sourceForTree": []}, {"@filename": "image.png", "@size": 1019, "@type": "", "@url": "/curator/supporting_files/download/supporting_files.doc.b3295de575b67fe9.696d6167652e706e67.png", "description": {"$": ""}, "sourceForTree": []}, {"@filename": "image.png", "@size": 2339, "@type": "", "@url": "/curator/supporting_files/download/supporting_files.doc.890682eb77e6b6e6.696d6167652e706e67.png", "description": {"$": ""}, "sourceForTree": []}]}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu11", "otu13", "otu14", "otu15", "otu16", "otu17", "otu18", "otu2", "otu22", "otu23", "otu24", "otu25", "otu26", "otu27", "otu29", "otu3", "otu33", "otu36", "otu37", "otu39", "otu4", "otu41", "otu46", "otu47", "otu48", "otu49", "otu5", "otu50", "otu51", "otu6", "otu7"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["highestMintedElementIDs"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:branchLengthTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit", "^ot:reasonsToExcludeFromSynthesis"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:ottId"], "refersTo": {"@top": "otus", "@idref": ["otu11", "otu13", "otu14", "otu15", "otu16", "otu17", "otu18", "otu2", "otu22", "otu23", "otu24", "otu25", "otu26", "otu27", "otu29", "otu3", "otu33", "otu36", "otu37", "otu39", "otu4", "otu41", "otu46", "otu47", "otu48", "otu49", "otu5", "otu50", "otu51", "otu6", "otu7"], "@otusID": "otus1", "@otuID": ["otu11", "otu13", "otu14", "otu15", "otu16", "otu17", "otu18", "otu2", "otu22", "otu23", "otu24", "otu25", "otu26", "otu27", "otu29", "otu3", "otu33", "otu36", "otu37", "otu39", "otu4", "otu41", "otu46", "otu47", "otu48", "otu49", "otu5", "otu50", "otu51", "otu6", "otu7"]}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": [], "^ot:comment": "", "^ot:curatorName": ["dchesters"], "^ot:dataDeposit": {"@href": ""}, "^ot:focalClade": 526913, "^ot:focalCladeOTTTaxonName": "Oncopodura", "^ot:otusElementOrder": ["otus1"], "^ot:studyId": "ot_2452", "^ot:studyPublication": {"@href": "https://doi.org/10.1007/s13744-024-01203-z"}, "^ot:studyPublicationReference": "de Oliveira, J. V. L. C., & Zeppelini, D. (2024). A New Perspective to Oncopodura (Collembola: Oncopoduridae) Groups Based on Appendicular Morphology. Neotropical Entomology, 53(6), 1220\u20131259. https://doi.org/10.1007/s13744-024-01203-z\n", "^ot:studyYear": 2024, "^ot:tag": [], "^ot:treesElementOrder": ["trees1"], "highestMintedElementIDs": {"agent": 0, "annotation": 0, "edge": 76, "message": 0, "node": 77, "otu": 53, "otus": 2, "tree": 1, "trees": 2}, "otusById": {"otus1": {"otuById": {"otu1": {"^ot:originalLabel": "Harlomillsia oculata", "^ot:ottId": 937227, "^ot:ottTaxonName": "Harlomillsia oculata"}, "otu10": {"^ot:originalLabel": "Oncopodura egerszogensis", "^ot:ottId": 5010001, "^ot:ottTaxonName": "Oncopodura egerszogensis"}, "otu11": {"^ot:originalLabel": "Oncopodura czmur"}, "otu12": {"^ot:originalLabel": "Oncopodura crassicornis", "^ot:ottId": 526912, "^ot:ottTaxonName": "Oncopodura crassicornis"}, "otu13": {"^ot:originalLabel": "Oncopodura bidentata"}, "otu14": {"^ot:originalLabel": "Oncopodura atoyacensis"}, "otu15": {"^ot:originalLabel": "Oncopodura hematita"}, "otu16": {"^ot:originalLabel": "Oncopodura equatoriana"}, "otu17": {"^ot:originalLabel": "Oncopodura reyerdorfensis"}, "otu18": {"^ot:originalLabel": "Oncopodura hyleana"}, "otu19": {"^ot:originalLabel": "Oncopodura meridionalis", "^ot:ottId": 5010015, "^ot:ottTaxonName": "Oncopodura meridionalis"}, "otu2": {"^ot:originalLabel": "Oncopodura kuramaensis"}, "otu20": {"^ot:originalLabel": "Oncopodura cruciata", "^ot:ottId": 5010014, "^ot:ottTaxonName": "Oncopodura cruciata"}, "otu21": {"^ot:originalLabel": "Oncopodura hoffi", "^ot:ottId": 5010002, "^ot:ottTaxonName": "Oncopodura hoffi"}, "otu22": {"^ot:originalLabel": "Oncopodura subhoffi"}, "otu23": {"^ot:originalLabel": "Oncopodura dethiere"}, "otu24": {"^ot:originalLabel": "Oncopodura ambigua"}, "otu25": {"^ot:originalLabel": "Oncopodura tiegsi"}, "otu26": {"^ot:originalLabel": "Oncopodura itatiaiensis"}, "otu27": {"^ot:originalLabel": "Oncopodura nana"}, "otu28": {"^ot:originalLabel": "Oncopodura tunica", "^ot:ottId": 5010011, "^ot:ottTaxonName": "Oncopodura tunica"}, "otu29": {"^ot:originalLabel": "Oncopodura hubbardi"}, "otu3": {"^ot:originalLabel": "Oncopodura mala"}, "otu30": {"^ot:originalLabel": "Oncopodura prietoi", "^ot:ottId": 5010013, "^ot:ottTaxonName": "Oncopodura prietoi"}, "otu31": {"^ot:originalLabel": "Oncopodura tricuspidata", "^ot:ottId": 5010020, "^ot:ottTaxonName": "Oncopodura tricuspidata"}, "otu32": {"^ot:originalLabel": "Oncopodura vioreli", "^ot:ottId": 5010004, "^ot:ottTaxonName": "Oncopodura vioreli"}, "otu33": {"^ot:originalLabel": "Oncopodura japonica"}, "otu34": {"^ot:originalLabel": "Oncopodura jugoslavica", "^ot:ottId": 5010008, "^ot:ottTaxonName": "Oncopodura jugoslavica"}, "otu35": {"^ot:originalLabel": "Oncopodura iowae", "^ot:ottId": 5010009, "^ot:ottTaxonName": "Oncopodura iowae"}, "otu36": {"^ot:originalLabel": "Oncopodura arecibena"}, "otu37": {"^ot:originalLabel": "Oncopodura gledensis"}, "otu38": {"^ot:originalLabel": "Oncopodura alpa", "^ot:ottId": 5010010, "^ot:ottTaxonName": "Oncopodura alpa"}, "otu39": {"^ot:originalLabel": "Oncopodura kuramotoi"}, "otu4": {"^ot:originalLabel": "Oncopodura turmalina"}, "otu40": {"^ot:originalLabel": "Oncopodura occidentalis", "^ot:ottId": 5010007, "^ot:ottTaxonName": "Oncopodura occidentalis"}, "otu41": {"^ot:originalLabel": "Oncopodura siquierae"}, "otu42": {"^ot:originalLabel": "Oncopodura lebretoni", "^ot:ottId": 5010017, "^ot:ottTaxonName": "Oncopodura lebretoni"}, "otu43": {"^ot:originalLabel": "Oncopodura cavernarum", "^ot:ottId": 5010003, "^ot:ottTaxonName": "Oncopodura cavernarum"}, "otu44": {"^ot:originalLabel": "Oncopodura fadriquei", "^ot:ottId": 6192893, "^ot:ottTaxonName": "Oncopodura fadriquei"}, "otu45": {"^ot:originalLabel": "Oncopodura jauzioni", "^ot:ottId": 5010016, "^ot:ottTaxonName": "Oncopodura jauzioni"}, "otu46": {"^ot:originalLabel": "Oncopodura puncteola"}, "otu47": {"^ot:originalLabel": "Oncopodura dura"}, "otu48": {"^ot:originalLabel": "Oncopodura gul"}, "otu49": {"^ot:originalLabel": "Oncopodura frankeae"}, "otu5": {"^ot:originalLabel": "Oncopodura aurea"}, "otu50": {"^ot:originalLabel": "Oncopodura fenestra"}, "otu51": {"^ot:originalLabel": "Oncopodura susanae"}, "otu52": {"^ot:originalLabel": "Oncopodura hamata", "^ot:ottId": 5010012, "^ot:ottTaxonName": "Oncopodura hamata"}, "otu53": {"^ot:originalLabel": "Oncopodura delhezi", "^ot:ottId": 5010019, "^ot:ottTaxonName": "Oncopodura delhezi"}, "otu6": {"^ot:originalLabel": "Oncopodura bauxita"}, "otu7": {"^ot:originalLabel": "Oncopodura yosiiana"}, "otu8": {"^ot:originalLabel": "Oncopodura pelissiei", "^ot:ottId": 5010005, "^ot:ottTaxonName": "Oncopodura pelissiei"}, "otu9": {"^ot:originalLabel": "Oncopodura pegyi", "^ot:ottId": 5010018, "^ot:ottTaxonName": "Oncopodura pegyi"}}}}, "treesById": {"trees1": {"@otus": "otus1", "^ot:treeElementOrder": ["tree1"], "treeById": {"tree1": {"@label": "Fig. 31 left, MP", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:undefined", "^ot:curatedType": "Maximum parsimony ", "^ot:inGroupClade": "node3", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:reasonsToExcludeFromSynthesis": [], "^ot:rootNodeId": "node1", "^ot:specifiedRoot": "node1", "^ot:tag": [], "^ot:unrootedTree": false, "edgeBySourceId": {"node1": {"edge1": {"@source": "node1", "@target": "node2"}, "edge2": {"@source": "node1", "@target": "node3"}}, "node10": {"edge10": {"@source": "node10", "@target": "node11"}, "edge11": {"@source": "node10", "@target": "node12"}, "edge12": {"@source": "node10", "@target": "node13"}, "edge13": {"@source": "node10", "@target": "node14"}, "edge14": {"@source": "node10", "@target": "node15"}, "edge15": {"@source": "node10", "@target": "node16"}, "edge16": {"@source": "node10", "@target": "node17"}, "edge17": {"@source": "node10", "@target": "node18"}, "edge18": {"@source": "node10", "@target": "node19"}, "edge22": {"@source": "node10", "@target": "node23"}}, "node19": {"edge19": {"@source": "node19", "@target": "node20"}, "edge20": {"@source": "node19", "@target": "node21"}, "edge21": {"@source": "node19", "@target": "node22"}}, "node23": {"edge23": {"@source": "node23", "@target": "node24"}, "edge24": {"@source": "node23", "@target": "node25"}}, "node25": {"edge25": {"@source": "node25", "@target": "node26"}, "edge26": {"@source": "node25", "@target": "node27"}, "edge30": {"@source": "node25", "@target": "node31"}}, "node27": {"edge27": {"@source": "node27", "@target": "node28"}, "edge28": {"@source": "node27", "@target": "node29"}, "edge29": {"@source": "node27", "@target": "node30"}}, "node3": {"edge3": {"@source": "node3", "@target": "node4"}, "edge4": {"@source": "node3", "@target": "node5"}, "edge5": {"@source": "node3", "@target": "node6"}, "edge6": {"@source": "node3", "@target": "node7"}, "edge9": {"@source": "node3", "@target": "node10"}}, "node31": {"edge31": {"@source": "node31", "@target": "node32"}, "edge32": {"@source": "node31", "@target": "node33"}}, "node33": {"edge33": {"@source": "node33", "@target": "node34"}, "edge36": {"@source": "node33", "@target": "node37"}}, "node34": {"edge34": {"@source": "node34", "@target": "node35"}, "edge35": {"@source": "node34", "@target": "node36"}}, "node37": {"edge37": {"@source": "node37", "@target": "node38"}, "edge38": {"@source": "node37", "@target": "node39"}}, "node39": {"edge39": {"@source": "node39", "@target": "node40"}, "edge40": {"@source": "node39", "@target": "node41"}}, "node41": {"edge41": {"@source": "node41", "@target": "node42"}, "edge42": {"@source": "node41", "@target": "node43"}, "edge43": {"@source": "node41", "@target": "node44"}}, "node44": {"edge44": {"@source": "node44", "@target": "node45"}, "edge45": {"@source": "node44", "@target": "node46"}, "edge46": {"@source": "node44", "@target": "node47"}}, "node47": {"edge47": {"@source": "node47", "@target": "node48"}, "edge48": {"@source": "node47", "@target": "node49"}, "edge53": {"@source": "node47", "@target": "node54"}}, "node49": {"edge49": {"@source": "node49", "@target": "node50"}, "edge50": {"@source": "node49", "@target": "node51"}, "edge51": {"@source": "node49", "@target": "node52"}, "edge52": {"@source": "node49", "@target": "node53"}}, "node54": {"edge54": {"@source": "node54", "@target": "node55"}, "edge55": {"@source": "node54", "@target": "node56"}, "edge56": {"@source": "node54", "@target": "node57"}, "edge60": {"@source": "node54", "@target": "node61"}}, "node57": {"edge57": {"@source": "node57", "@target": "node58"}, "edge58": {"@source": "node57", "@target": "node59"}, "edge59": {"@source": "node57", "@target": "node60"}}, "node61": {"edge61": {"@source": "node61", "@target": "node62"}, "edge62": {"@source": "node61", "@target": "node63"}, "edge63": {"@source": "node61", "@target": "node64"}, "edge67": {"@source": "node61", "@target": "node68"}}, "node64": {"edge64": {"@source": "node64", "@target": "node65"}, "edge65": {"@source": "node64", "@target": "node66"}, "edge66": {"@source": "node64", "@target": "node67"}}, "node68": {"edge68": {"@source": "node68", "@target": "node69"}, "edge69": {"@source": "node68", "@target": "node70"}, "edge70": {"@source": "node68", "@target": "node71"}, "edge73": {"@source": "node68", "@target": "node74"}}, "node7": {"edge7": {"@source": "node7", "@target": "node8"}, "edge8": {"@source": "node7", "@target": "node9"}}, "node71": {"edge71": {"@source": "node71", "@target": "node72"}, "edge72": {"@source": "node71", "@target": "node73"}}, "node74": {"edge74": {"@source": "node74", "@target": "node75"}, "edge75": {"@source": "node74", "@target": "node76"}, "edge76": {"@source": "node74", "@target": "node77"}}}, "nodeById": {"node1": {"@root": true}, "node10": {}, "node11": {"@otu": "otu7"}, "node12": {"@otu": "otu8"}, "node13": {"@otu": "otu9"}, "node14": {"@otu": "otu10"}, "node15": {"@otu": "otu11"}, "node16": {"@otu": "otu12"}, "node17": {"@otu": "otu13"}, "node18": {"@otu": "otu14"}, "node19": {}, "node2": {"@otu": "otu1"}, "node20": {"@otu": "otu15"}, "node21": {"@otu": "otu16"}, "node22": {"@otu": "otu17"}, "node23": {}, "node24": {"@otu": "otu18"}, "node25": {}, "node26": {"@otu": "otu19"}, "node27": {}, "node28": {"@otu": "otu20"}, "node29": {"@otu": "otu21"}, "node3": {}, "node30": {"@otu": "otu22"}, "node31": {}, "node32": {"@otu": "otu23"}, "node33": {}, "node34": {}, "node35": {"@otu": "otu24"}, "node36": {"@otu": "otu25"}, "node37": {}, "node38": {"@otu": "otu26"}, "node39": {}, "node4": {"@otu": "otu2"}, "node40": {"@otu": "otu27"}, "node41": {}, "node42": {"@otu": "otu28"}, "node43": {"@otu": "otu29"}, "node44": {}, "node45": {"@otu": "otu30"}, "node46": {"@otu": "otu31"}, "node47": {}, "node48": {"@otu": "otu32"}, "node49": {}, "node5": {"@otu": "otu3"}, "node50": {"@otu": "otu33"}, "node51": {"@otu": "otu34"}, "node52": {"@otu": "otu35"}, "node53": {"@otu": "otu36"}, "node54": {}, "node55": {"@otu": "otu37"}, "node56": {"@otu": "otu38"}, "node57": {}, "node58": {"@otu": "otu39"}, "node59": {"@otu": "otu40"}, "node6": {"@otu": "otu4"}, "node60": {"@otu": "otu41"}, "node61": {}, "node62": {"@otu": "otu42"}, "node63": {"@otu": "otu43"}, "node64": {}, "node65": {"@otu": "otu44"}, "node66": {"@otu": "otu45"}, "node67": {"@otu": "otu46"}, "node68": {}, "node69": {"@otu": "otu47"}, "node7": {}, "node70": {"@otu": "otu48"}, "node71": {}, "node72": {"@otu": "otu49"}, "node73": {"@otu": "otu50"}, "node74": {}, "node75": {"@otu": "otu51"}, "node76": {"@otu": "otu52"}, "node77": {"@otu": "otu53"}, "node8": {"@otu": "otu5"}, "node9": {"@otu": "otu6"}}}}}}}}, "branch2sha": {"master": "2aa180baef3c5e313da1e7f09c83ce2c0467b457"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "11f20bbfd13e9874ef524f7ea0b4b229f63d7cbb", "author_name": "dchesters", "author_email": "dc0357548934@live.co.uk", "date": "Tue, 18 Feb 2025 00:02:00 +0000", "date_ISO_8601": "2025-02-18 00:02:00 +0000", "relative_date": "1 year, 2 months ago", "message_subject": "Initial commit of de Oliveira and Zeppelini 2024", "message_body": "DeoliveiraZeppelini2024Oncopodura.nwk\n\n(Update document 'ot_2452' via OpenTree API)"}, {"id": "99123b21f6933ef926c1da591e02611802c4759a", "author_name": "dchesters", "author_email": "dc0357548934@live.co.uk", "date": "Mon, 17 Feb 2025 23:58:58 +0000", "date_ISO_8601": "2025-02-17 23:58:58 +0000", "relative_date": "1 year, 2 months ago", "message_subject": "Update document 'ot_2452' via OpenTree API"}]}