{"sha": "c33806c9ee11db205ee8c02a42e31b1c3128e299", "data": {"nexml": {"@about": "#study", "@generator": "Open Tree API", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xhtml": "http://www.w3.org/1999/xhtml/vocab#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "Open Tree NexSON validation", "@id": "peyotl-validator", "@name": "api.opentreeoflife.org/validate", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": [], "otherProperty": [{"name": "pythonVersion", "value": "3.10.12"}, {"name": "pythonImplementation", "value": "CPython"}]}}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0"}]}, "^ot:annotationEvents": {"annotation": [{"@dateCreated": "2025-02-26T11:27:38.981Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"autoAcceptExactMatches": true, "searchContext": {"$": "Insects"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}]}, "useFuzzyMatching": false}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2025-02-26T11:27:38.980Z", "@description": "Describes external namesets merged into this study", "@id": "merged-namesets-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "MERGED_NAMESET_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"namesets": {"nameset": []}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2025-02-26T11:27:38.980Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": [{"@filename": "MicoMoron2008Cetoniidae.nwk", "@size": 975, "@type": "newick", "@url": "/curator/download/supporting_files.doc.ab1c15c28121aa56.4d69636f4d6f726f6e323030384365746f6e69696461652e6e776b.nwk", "description": {"$": "Source data for tree(s) 'tree1'"}, "sourceForTree": [{"$": "tree1"}]}, {"@filename": "image.png", "@size": 662, "@type": "", "@url": "/curator/supporting_files/download/supporting_files.doc.ad2d1035e5a049cd.696d6167652e706e67.png", "description": {"$": ""}, "sourceForTree": []}, {"@filename": "image.png", "@size": 880, "@type": "", "@url": "/curator/supporting_files/download/supporting_files.doc.a192d7a1283863d3.696d6167652e706e67.png", "description": {"$": ""}, "sourceForTree": []}, {"@filename": "image.png", "@size": 2091, "@type": "", "@url": "/curator/supporting_files/download/supporting_files.doc.8f772825a3a11f5d.696d6167652e706e67.png", "description": {"$": ""}, "sourceForTree": []}, {"@filename": "image.png", "@size": 2870, "@type": "", "@url": "/curator/supporting_files/download/supporting_files.doc.816fa0e156c4a49b.696d6167652e706e67.png", "description": {"$": ""}, "sourceForTree": []}]}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu16", "otu19", "otu23", "otu24", "otu28", "otu7"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["highestMintedElementIDs"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:branchLengthTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit", "^ot:reasonsToExcludeFromSynthesis"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:ottId"], "refersTo": {"@top": "otus", "@idref": ["otu16", "otu19", "otu23", "otu24", "otu28", "otu7"], "@otusID": "otus1", "@otuID": ["otu16", "otu19", "otu23", "otu24", "otu28", "otu7"]}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": [], "^ot:comment": "", "^ot:curatorName": ["dchesters"], "^ot:dataDeposit": {"@href": ""}, "^ot:focalClade": 7768586, "^ot:focalCladeOTTTaxonName": "Cetoniinae", "^ot:otusElementOrder": ["otus1"], "^ot:studyId": "ot_2519", "^ot:studyPublication": {"@href": "https://doi.org/10.1111/j.1365-3113.2007.00399.x"}, "^ot:studyPublicationReference": "MIC\u00d3, E., MOR\u00d3N, M. \u00c1., \u0160\u00cdPEK, P., & GALANTE, E. (2007). Larval morphology enhances phylogenetic reconstruction in Cetoniidae (Coleoptera: Scarabaeoidea) and allows the interpretation of the evolution of larval feeding habits. Systematic Entomology, 33(1), 128\u2013144. Portico. https://doi.org/10.1111/j.1365-3113.2007.00399.x\n", "^ot:studyYear": 2008, "^ot:tag": [], "^ot:treesElementOrder": ["trees1"], "highestMintedElementIDs": {"agent": 0, "annotation": 0, "edge": 86, "message": 0, "node": 87, "otu": 44, "otus": 2, "tree": 1, "trees": 2}, "otusById": {"otus1": {"otuById": {"otu1": {"^ot:originalLabel": "Phyllophaga obsoleta", "^ot:ottId": 3334211, "^ot:ottTaxonName": "Phyllophaga obsoleta"}, "otu10": {"^ot:originalLabel": "Inca clathrata", "^ot:ottId": 4630324, "^ot:ottTaxonName": "Inca clathrata"}, "otu11": {"^ot:originalLabel": "Osmoderma eremita", "^ot:ottId": 88900, "^ot:ottTaxonName": "Osmoderma eremita"}, "otu12": {"^ot:originalLabel": "Cremastocheilus wheeleri", "^ot:ottId": 4629143, "^ot:ottTaxonName": "Cremastocheilus wheeleri"}, "otu13": {"^ot:originalLabel": "Dicronocephalus wallichi", "^ot:ottId": 4630013, "^ot:ottTaxonName": "Dicronocephalus wallichi"}, "otu14": {"^ot:originalLabel": "Fornasinius fornasini", "^ot:ottId": 4630541, "^ot:ottTaxonName": "Fornasinius fornasini"}, "otu15": {"^ot:originalLabel": "Goliathus orientalis", "^ot:ottId": 4629981, "^ot:ottTaxonName": "Goliathus orientalis"}, "otu16": {"^ot:originalLabel": "Eudicella euthalia"}, "otu17": {"^ot:originalLabel": "Neoscelis dohrni", "^ot:ottId": 4633379, "^ot:ottTaxonName": "Neoscelis dohrni"}, "otu18": {"^ot:originalLabel": "Stephanorrhina princeps", "^ot:ottId": 4632506, "^ot:ottTaxonName": "Stephanorrhina princeps"}, "otu19": {"^ot:originalLabel": "Anisorrhina flavomarginata"}, "otu2": {"^ot:originalLabel": "Oryctes nasicornis", "^ot:ottId": 492988, "^ot:ottTaxonName": "Oryctes nasicornis"}, "otu20": {"^ot:originalLabel": "Chlorocala africana", "^ot:ottId": 4630103, "^ot:ottTaxonName": "Chlorocala africana"}, "otu21": {"^ot:originalLabel": "Cheirolasia burkei", "^ot:ottId": 4630688, "^ot:ottTaxonName": "Cheirolasia burkei"}, "otu22": {"^ot:originalLabel": "Mecynorhina polyphemus", "^ot:ottId": 4633014, "^ot:ottTaxonName": "Mecynorhina polyphemus"}, "otu23": {"^ot:originalLabel": "Amaurodes passerinii"}, "otu24": {"^ot:originalLabel": "Megalorrhina harrisi"}, "otu25": {"^ot:originalLabel": "Diplognatha gagates", "^ot:ottId": 4632222, "^ot:ottTaxonName": "Diplognatha gagates"}, "otu26": {"^ot:originalLabel": "Trichaulax macleayi", "^ot:ottId": 4629630, "^ot:ottTaxonName": "Trichaulax macleayi"}, "otu27": {"^ot:originalLabel": "Thaumastopeus pugnator", "^ot:ottId": 4633562, "^ot:ottTaxonName": "Thaumastopeus pugnator"}, "otu28": {"^ot:originalLabel": "Campsiura cognatha"}, "otu29": {"^ot:originalLabel": "Cotinis mutabilis", "^ot:ottId": 207891, "^ot:ottTaxonName": "Cotinis mutabilis"}, "otu3": {"^ot:originalLabel": "Valgus hemipterus", "^ot:ottId": 489105, "^ot:ottTaxonName": "Valgus hemipterus"}, "otu30": {"^ot:originalLabel": "Conradtia principalis", "^ot:ottId": 4632633, "^ot:ottTaxonName": "Conradtia principalis"}, "otu31": {"^ot:originalLabel": "Euchroea flavoguttata", "^ot:ottId": 4631506, "^ot:ottTaxonName": "Euchroea flavoguttata"}, "otu32": {"^ot:originalLabel": "Hologymnetis cinerea", "^ot:ottId": 4632142, "^ot:ottTaxonName": "Hologymnetis cinerea"}, "otu33": {"^ot:originalLabel": "Gymnetis flavomarginata", "^ot:ottId": 4632119, "^ot:ottTaxonName": "Gymnetis flavomarginata"}, "otu34": {"^ot:originalLabel": "Argyripa lansbergei", "^ot:ottId": 4630416, "^ot:ottTaxonName": "Argyripa lansbergei"}, "otu35": {"^ot:originalLabel": "Hoplopyga singularis", "^ot:ottId": 4633034, "^ot:ottTaxonName": "Hoplopyga singularis"}, "otu36": {"^ot:originalLabel": "Tropinota squalida", "^ot:ottId": 473691, "^ot:ottTaxonName": "Tropinota squalida"}, "otu37": {"^ot:originalLabel": "Euphoria lurida", "^ot:ottId": 4629690, "^ot:ottTaxonName": "Euphoria lurida"}, "otu38": {"^ot:originalLabel": "Oxythyrea funesta", "^ot:ottId": 3333722, "^ot:ottTaxonName": "Oxythyrea funesta"}, "otu39": {"^ot:originalLabel": "Pachnoda sinuata", "^ot:ottId": 3333264, "^ot:ottTaxonName": "Pachnoda sinuata"}, "otu4": {"^ot:originalLabel": "Valgus californicus", "^ot:ottId": 3339351, "^ot:ottTaxonName": "Valgus californicus"}, "otu40": {"^ot:originalLabel": "Potosia cuprea", "^ot:ottId": 508104, "^ot:ottTaxonName": "Protaetia cuprea"}, "otu41": {"^ot:originalLabel": "Cetonia carthami", "^ot:ottId": 368557, "^ot:ottTaxonName": "Cetonia carthami"}, "otu42": {"^ot:originalLabel": "Netocia morio", "^ot:ottId": 3333421, "^ot:ottTaxonName": "Protaetia morio"}, "otu43": {"^ot:originalLabel": "Stalagmosoma albella", "^ot:ottId": 4631207, "^ot:ottTaxonName": "Stalagmosoma albellum"}, "otu44": {"^ot:originalLabel": "Aethiessa floralis", "^ot:ottId": 4629602, "^ot:ottTaxonName": "Aethiessa floralis"}, "otu5": {"^ot:originalLabel": "Valgus canaliculatus", "^ot:ottId": 3339364, "^ot:ottTaxonName": "Valgus canaliculatus"}, "otu6": {"^ot:originalLabel": "Trichius fasciatus", "^ot:ottId": 3333748, "^ot:ottTaxonName": "Trichius fasciatus"}, "otu7": {"^ot:originalLabel": "Gnorimus variabilis"}, "otu8": {"^ot:originalLabel": "Iridisoma acahuizotlensis", "^ot:ottId": 4633925, "^ot:ottTaxonName": "Iridisoma acahuizotlensis"}, "otu9": {"^ot:originalLabel": "Archedinus relictus", "^ot:ottId": 4634230, "^ot:ottTaxonName": "Archedinus relictus"}}}}, "treesById": {"trees1": {"@otus": "otus1", "^ot:treeElementOrder": ["tree1"], "treeById": {"tree1": {"@label": "Fig. 15, MP", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:undefined", "^ot:curatedType": "Maximum parsimony ", "^ot:inGroupClade": "node3", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:reasonsToExcludeFromSynthesis": [], "^ot:rootNodeId": "node1", "^ot:specifiedRoot": "node1", "^ot:tag": [], "^ot:unrootedTree": false, "edgeBySourceId": {"node1": {"edge1": {"@source": "node1", "@target": "node2"}, "edge2": {"@source": "node1", "@target": "node3"}}, "node12": {"edge12": {"@source": "node12", "@target": "node13"}, "edge13": {"@source": "node12", "@target": "node14"}}, "node14": {"edge14": {"@source": "node14", "@target": "node15"}, "edge15": {"@source": "node14", "@target": "node16"}}, "node17": {"edge17": {"@source": "node17", "@target": "node18"}, "edge20": {"@source": "node17", "@target": "node21"}}, "node18": {"edge18": {"@source": "node18", "@target": "node19"}, "edge19": {"@source": "node18", "@target": "node20"}}, "node21": {"edge21": {"@source": "node21", "@target": "node22"}, "edge22": {"@source": "node21", "@target": "node23"}}, "node23": {"edge23": {"@source": "node23", "@target": "node24"}, "edge24": {"@source": "node23", "@target": "node25"}}, "node25": {"edge25": {"@source": "node25", "@target": "node26"}, "edge48": {"@source": "node25", "@target": "node49"}}, "node26": {"edge26": {"@source": "node26", "@target": "node27"}, "edge27": {"@source": "node26", "@target": "node28"}}, "node28": {"edge28": {"@source": "node28", "@target": "node29"}, "edge29": {"@source": "node28", "@target": "node30"}}, "node3": {"edge3": {"@source": "node3", "@target": "node4"}, "edge4": {"@source": "node3", "@target": "node5"}}, "node30": {"edge30": {"@source": "node30", "@target": "node31"}, "edge31": {"@source": "node30", "@target": "node32"}}, "node32": {"edge32": {"@source": "node32", "@target": "node33"}, "edge35": {"@source": "node32", "@target": "node36"}}, "node33": {"edge33": {"@source": "node33", "@target": "node34"}, "edge34": {"@source": "node33", "@target": "node35"}}, "node36": {"edge36": {"@source": "node36", "@target": "node37"}, "edge37": {"@source": "node36", "@target": "node38"}}, "node38": {"edge38": {"@source": "node38", "@target": "node39"}, "edge39": {"@source": "node38", "@target": "node40"}}, "node40": {"edge40": {"@source": "node40", "@target": "node41"}, "edge41": {"@source": "node40", "@target": "node42"}}, "node42": {"edge42": {"@source": "node42", "@target": "node43"}, "edge43": {"@source": "node42", "@target": "node44"}}, "node44": {"edge44": {"@source": "node44", "@target": "node45"}, "edge45": {"@source": "node44", "@target": "node46"}}, "node46": {"edge46": {"@source": "node46", "@target": "node47"}, "edge47": {"@source": "node46", "@target": "node48"}}, "node49": {"edge49": {"@source": "node49", "@target": "node50"}, "edge50": {"@source": "node49", "@target": "node51"}}, "node5": {"edge16": {"@source": "node5", "@target": "node17"}, "edge5": {"@source": "node5", "@target": "node6"}}, "node51": {"edge51": {"@source": "node51", "@target": "node52"}, "edge52": {"@source": "node51", "@target": "node53"}}, "node53": {"edge53": {"@source": "node53", "@target": "node54"}, "edge56": {"@source": "node53", "@target": "node57"}}, "node54": {"edge54": {"@source": "node54", "@target": "node55"}, "edge55": {"@source": "node54", "@target": "node56"}}, "node57": {"edge57": {"@source": "node57", "@target": "node58"}, "edge60": {"@source": "node57", "@target": "node61"}}, "node58": {"edge58": {"@source": "node58", "@target": "node59"}, "edge59": {"@source": "node58", "@target": "node60"}}, "node6": {"edge11": {"@source": "node6", "@target": "node12"}, "edge6": {"@source": "node6", "@target": "node7"}}, "node61": {"edge61": {"@source": "node61", "@target": "node62"}, "edge62": {"@source": "node61", "@target": "node63"}}, "node63": {"edge63": {"@source": "node63", "@target": "node64"}, "edge70": {"@source": "node63", "@target": "node71"}}, "node64": {"edge64": {"@source": "node64", "@target": "node65"}, "edge65": {"@source": "node64", "@target": "node66"}}, "node66": {"edge66": {"@source": "node66", "@target": "node67"}, "edge67": {"@source": "node66", "@target": "node68"}}, "node68": {"edge68": {"@source": "node68", "@target": "node69"}, "edge69": {"@source": "node68", "@target": "node70"}}, "node7": {"edge7": {"@source": "node7", "@target": "node8"}, "edge8": {"@source": "node7", "@target": "node9"}}, "node71": {"edge71": {"@source": "node71", "@target": "node72"}, "edge76": {"@source": "node71", "@target": "node77"}}, "node72": {"edge72": {"@source": "node72", "@target": "node73"}, "edge73": {"@source": "node72", "@target": "node74"}}, "node74": {"edge74": {"@source": "node74", "@target": "node75"}, "edge75": {"@source": "node74", "@target": "node76"}}, "node77": {"edge77": {"@source": "node77", "@target": "node78"}, "edge78": {"@source": "node77", "@target": "node79"}}, "node79": {"edge79": {"@source": "node79", "@target": "node80"}, "edge80": {"@source": "node79", "@target": "node81"}}, "node81": {"edge81": {"@source": "node81", "@target": "node82"}, "edge82": {"@source": "node81", "@target": "node83"}}, "node83": {"edge83": {"@source": "node83", "@target": "node84"}, "edge84": {"@source": "node83", "@target": "node85"}}, "node85": {"edge85": {"@source": "node85", "@target": "node86"}, "edge86": {"@source": "node85", "@target": "node87"}}, "node9": {"edge10": {"@source": "node9", "@target": "node11"}, "edge9": {"@source": "node9", "@target": "node10"}}}, "nodeById": {"node1": {"@root": true}, "node10": {"@otu": "otu4"}, "node11": {"@otu": "otu5"}, "node12": {}, "node13": {"@otu": "otu6"}, "node14": {}, "node15": {"@otu": "otu7"}, "node16": {"@otu": "otu8"}, "node17": {}, "node18": {}, "node19": {"@otu": "otu9"}, "node2": {"@otu": "otu1"}, "node20": {"@otu": "otu10"}, "node21": {}, "node22": {"@otu": "otu11"}, "node23": {}, "node24": {"@otu": "otu12"}, "node25": {}, "node26": {}, "node27": {"@otu": "otu13"}, "node28": {}, "node29": {"@otu": "otu14"}, "node3": {}, "node30": {}, "node31": {"@otu": "otu15"}, "node32": {}, "node33": {}, "node34": {"@otu": "otu16"}, "node35": {"@otu": "otu17"}, "node36": {}, "node37": {"@otu": "otu18"}, "node38": {}, "node39": {"@otu": "otu19"}, "node4": {"@otu": "otu2"}, "node40": {}, "node41": {"@otu": "otu20"}, "node42": {}, "node43": {"@otu": "otu21"}, "node44": {}, "node45": {"@otu": "otu22"}, "node46": {}, "node47": {"@otu": "otu23"}, "node48": {"@otu": "otu24"}, "node49": {}, "node5": {}, "node50": {"@otu": "otu25"}, "node51": {}, "node52": {"@otu": "otu26"}, "node53": {}, "node54": {}, "node55": {"@otu": "otu27"}, "node56": {"@otu": "otu28"}, "node57": {}, "node58": {}, "node59": {"@otu": "otu29"}, "node6": {}, "node60": {"@otu": "otu30"}, "node61": {}, "node62": {"@otu": "otu31"}, "node63": {}, "node64": {}, "node65": {"@otu": "otu32"}, "node66": {}, "node67": {"@otu": "otu33"}, "node68": {}, "node69": {"@otu": "otu34"}, "node7": {}, "node70": {"@otu": "otu35"}, "node71": {}, "node72": {}, "node73": {"@otu": "otu36"}, "node74": {}, "node75": {"@otu": "otu37"}, "node76": {"@otu": "otu38"}, "node77": {}, "node78": {"@otu": "otu39"}, "node79": {}, "node8": {"@otu": "otu3"}, "node80": {"@otu": "otu40"}, "node81": {}, "node82": {"@otu": "otu41"}, "node83": {}, "node84": {"@otu": "otu42"}, "node85": {}, "node86": {"@otu": "otu43"}, "node87": {"@otu": "otu44"}, "node9": {}}}}}}}}, "branch2sha": {"master": "c33806c9ee11db205ee8c02a42e31b1c3128e299"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "1742227929d8fd0dbe4495fa52fdffad427c4c85", "author_name": "dchesters", "author_email": "dc0357548934@live.co.uk", "date": "Wed, 26 Feb 2025 11:30:31 +0000", "date_ISO_8601": "2025-02-26 11:30:31 +0000", "relative_date": "1 year, 2 months ago", "message_subject": "Initial commit MIC\u00d3 et al 2008", "message_body": "MicoMoron2008Cetoniidae.nwk\nTerminal Cetonia c. aurataeformis transcribed as and assumed to be Cetonia carthami.\n\n(Update document 'ot_2519' via OpenTree API)"}, {"id": "a1bf2d2722bf9ffe6390bed15618c82ce6fb9c70", "author_name": "dchesters", "author_email": "dc0357548934@live.co.uk", "date": "Wed, 26 Feb 2025 11:27:34 +0000", "date_ISO_8601": "2025-02-26 11:27:34 +0000", "relative_date": "1 year, 2 months ago", "message_subject": "Update document 'ot_2519' via OpenTree API"}]}