{"sha": "c33806c9ee11db205ee8c02a42e31b1c3128e299", "data": {"nexml": {"@about": "#study", "@generator": "Open Tree API", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xhtml": "http://www.w3.org/1999/xhtml/vocab#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "Open Tree NexSON validation", "@id": "peyotl-validator", "@name": "api.opentreeoflife.org/validate", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": [], "otherProperty": [{"name": "pythonVersion", "value": "3.10.12"}, {"name": "pythonImplementation", "value": "CPython"}]}}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0"}]}, "^ot:annotationEvents": {"annotation": [{"@dateCreated": "2025-03-01T05:53:55.629Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"autoAcceptExactMatches": true, "searchContext": {"$": "Insects"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}]}, "useFuzzyMatching": false}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2025-03-01T05:53:55.629Z", "@description": "Describes external namesets merged into this study", "@id": "merged-namesets-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "MERGED_NAMESET_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"namesets": {"nameset": []}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2025-03-01T05:53:55.629Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": [{"@filename": "ChangHuang2016Acrididae.nwk", "@size": 304, "@type": "newick", "@url": "/curator/download/supporting_files.doc.985ae4d113b80b16.4368616e674875616e67323031364163726964696461652e6e776b.nwk", "description": {"$": "Source data for tree(s) 'tree1'"}, "sourceForTree": [{"$": "tree1"}]}, {"@filename": "image.png", "@size": 513, "@type": "", "@url": "/curator/supporting_files/download/supporting_files.doc.bdbdd63281729e3f.696d6167652e706e67.png", "description": {"$": ""}, "sourceForTree": []}, {"@filename": "image.png", "@size": 843, "@type": "", "@url": "/curator/supporting_files/download/supporting_files.doc.80e8e20573032de0.696d6167652e706e67.png", "description": {"$": ""}, "sourceForTree": []}, {"@filename": "image.png", "@size": 1608, "@type": "", "@url": "/curator/supporting_files/download/supporting_files.doc.9437bc8325e98487.696d6167652e706e67.png", "description": {"$": ""}, "sourceForTree": []}, {"@filename": "image.png", "@size": 2139, "@type": "", "@url": "/curator/supporting_files/download/supporting_files.doc.9cf73c1f0e09cbe9.696d6167652e706e67.png", "description": {"$": ""}, "sourceForTree": []}]}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu10", "otu2"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["highestMintedElementIDs"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:branchLengthTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit", "^ot:reasonsToExcludeFromSynthesis"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:ottId"], "refersTo": {"@top": "otus", "@idref": ["otu10", "otu2"], "@otusID": "otus1", "@otuID": ["otu10", "otu2"]}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": [], "^ot:comment": "", "^ot:curatorName": ["dchesters"], "^ot:dataDeposit": {"@href": ""}, "^ot:focalClade": 178928, "^ot:focalCladeOTTTaxonName": "Acrididae", "^ot:otusElementOrder": ["otus1"], "^ot:studyId": "ot_2554", "^ot:studyPublication": {"@href": "https://doi.org/10.1080/23802359.2016.1197067"}, "^ot:studyPublicationReference": "Chang, H., & Huang, Y. (2016). The complete mitochondrial genome of the Hieroglyphus tonkinensis (Orthoptera: Acrididae). Mitochondrial DNA Part B, 1(1), 534\u2013535. https://doi.org/10.1080/23802359.2016.1197067\n", "^ot:studyYear": 2016, "^ot:tag": [], "^ot:treesElementOrder": ["trees1"], "highestMintedElementIDs": {"agent": 0, "annotation": 0, "edge": 26, "message": 0, "node": 27, "otu": 14, "otus": 2, "tree": 1, "trees": 2}, "otusById": {"otus1": {"otuById": {"otu1": {"^ot:originalLabel": "Thrinchus schrenkii", "^ot:ottId": 43842, "^ot:ottTaxonName": "Thrinchus schrenkii"}, "otu10": {"^ot:originalLabel": "Calliptamus italicus"}, "otu11": {"^ot:originalLabel": "Peripolus nepalensis", "^ot:ottId": 3503416, "^ot:ottTaxonName": "Peripolus nepalensis"}, "otu12": {"^ot:originalLabel": "Xenocatantops brachycerus", "^ot:ottId": 281719, "^ot:ottTaxonName": "Xenocatantops brachycerus"}, "otu13": {"^ot:originalLabel": "Schistocerca gregaria", "^ot:ottId": 330338, "^ot:ottTaxonName": "Schistocerca gregaria"}, "otu14": {"^ot:originalLabel": "Chondracris rosea", "^ot:ottId": 547181, "^ot:ottTaxonName": "Chondracris rosea"}, "otu2": {"^ot:originalLabel": "Hieroglyphus tonkinensis"}, "otu3": {"^ot:originalLabel": "Pseudoxya diminuta", "^ot:ottId": 131652, "^ot:ottTaxonName": "Pseudoxya diminuta"}, "otu4": {"^ot:originalLabel": "Oxya hyla", "^ot:ottId": 922253, "^ot:ottTaxonName": "Oxya hyla"}, "otu5": {"^ot:originalLabel": "Oxya chinensis", "^ot:ottId": 1026788, "^ot:ottTaxonName": "Oxya chinensis"}, "otu6": {"^ot:originalLabel": "Prumna arctica", "^ot:ottId": 800425, "^ot:ottTaxonName": "Prumna arctica"}, "otu7": {"^ot:originalLabel": "Ognevia longipennis", "^ot:ottId": 219149, "^ot:ottTaxonName": "Ognevia longipennis"}, "otu8": {"^ot:originalLabel": "Kingdonella bicollina", "^ot:ottId": 3504479, "^ot:ottTaxonName": "Kingdonella bicollina"}, "otu9": {"^ot:originalLabel": "Shirakiacris shirakii", "^ot:ottId": 378713, "^ot:ottTaxonName": "Shirakiacris shirakii"}}}}, "treesById": {"trees1": {"@otus": "otus1", "^ot:treeElementOrder": ["tree1"], "treeById": {"tree1": {"@label": "Fig. 1", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:undefined", "^ot:curatedType": "Maximum likelihood ", "^ot:inGroupClade": "node3", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:reasonsToExcludeFromSynthesis": [], "^ot:rootNodeId": "node1", "^ot:specifiedRoot": "node1", "^ot:tag": [], "^ot:unrootedTree": false, "edgeBySourceId": {"node1": {"edge1": {"@source": "node1", "@target": "node2"}, "edge2": {"@source": "node1", "@target": "node3"}}, "node12": {"edge12": {"@source": "node12", "@target": "node13"}, "edge13": {"@source": "node12", "@target": "node14"}}, "node14": {"edge14": {"@source": "node14", "@target": "node15"}, "edge15": {"@source": "node14", "@target": "node16"}}, "node17": {"edge17": {"@source": "node17", "@target": "node18"}, "edge22": {"@source": "node17", "@target": "node23"}}, "node18": {"edge18": {"@source": "node18", "@target": "node19"}, "edge19": {"@source": "node18", "@target": "node20"}}, "node20": {"edge20": {"@source": "node20", "@target": "node21"}, "edge21": {"@source": "node20", "@target": "node22"}}, "node23": {"edge23": {"@source": "node23", "@target": "node24"}, "edge24": {"@source": "node23", "@target": "node25"}}, "node25": {"edge25": {"@source": "node25", "@target": "node26"}, "edge26": {"@source": "node25", "@target": "node27"}}, "node3": {"edge16": {"@source": "node3", "@target": "node17"}, "edge3": {"@source": "node3", "@target": "node4"}}, "node4": {"edge11": {"@source": "node4", "@target": "node12"}, "edge4": {"@source": "node4", "@target": "node5"}}, "node5": {"edge5": {"@source": "node5", "@target": "node6"}, "edge6": {"@source": "node5", "@target": "node7"}}, "node7": {"edge7": {"@source": "node7", "@target": "node8"}, "edge8": {"@source": "node7", "@target": "node9"}}, "node9": {"edge10": {"@source": "node9", "@target": "node11"}, "edge9": {"@source": "node9", "@target": "node10"}}}, "nodeById": {"node1": {"@root": true}, "node10": {"@otu": "otu4"}, "node11": {"@otu": "otu5"}, "node12": {}, "node13": {"@otu": "otu6"}, "node14": {}, "node15": {"@otu": "otu7"}, "node16": {"@otu": "otu8"}, "node17": {}, "node18": {}, "node19": {"@otu": "otu9"}, "node2": {"@otu": "otu1"}, "node20": {}, "node21": {"@otu": "otu10"}, "node22": {"@otu": "otu11"}, "node23": {}, "node24": {"@otu": "otu12"}, "node25": {}, "node26": {"@otu": "otu13"}, "node27": {"@otu": "otu14"}, "node3": {}, "node4": {}, "node5": {}, "node6": {"@otu": "otu2"}, "node7": {}, "node8": {"@otu": "otu3"}, "node9": {}}}}}}}}, "branch2sha": {"master": "c33806c9ee11db205ee8c02a42e31b1c3128e299"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "5f968553f82c6f9f8479a284af6fe0ebf4375f6d", "author_name": "dchesters", "author_email": "dc0357548934@live.co.uk", "date": "Sat, 1 Mar 2025 05:55:45 +0000", "date_ISO_8601": "2025-03-01 05:55:45 +0000", "relative_date": "1 year, 2 months ago", "message_subject": "Initial commit Chang and Huang (2016)", "message_body": "ChangHuang2016Acrididae.nwk\n\n(Update document 'ot_2554' via OpenTree API)"}, {"id": "ec84f31ff3ab13a82b26c6a5e2398368bab90982", "author_name": "dchesters", "author_email": "dc0357548934@live.co.uk", "date": "Sat, 1 Mar 2025 05:53:48 +0000", "date_ISO_8601": "2025-03-01 05:53:48 +0000", "relative_date": "1 year, 2 months ago", "message_subject": "Update document 'ot_2554' via OpenTree API"}]}