{"sha": "c33806c9ee11db205ee8c02a42e31b1c3128e299", "data": {"nexml": {"@about": "#study", "@generator": "Open Tree API", "@id": "study", "@nexml2json": "0.0.0", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xhtml": "http://www.w3.org/1999/xhtml/vocab#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "highestMintedElementIDs": {"agent": 0, "annotation": 0, "edge": 40, "message": 0, "node": 41, "otu": 21, "otus": 2, "tree": 1, "trees": 2}, "otus": {"@id": "otus1", "otu": [{"@id": "otu1", "@about": "#otu1", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Leptohyphes ecuador"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 5013871}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Leptohyphes ecuador"}]}, {"@id": "otu10", "@about": "#otu10", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Tricorythodes sallesi"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 6322063}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Tricorythodes sallesi"}]}, {"@id": "otu11", "@about": "#otu11", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Tricorythodes arequita"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 5013804}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Tricorythodes arequita"}]}, {"@id": "otu12", "@about": "#otu12", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Tricorythodes sierramaestrae"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 5013807}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Tricorythodes sierramaestrae"}]}, {"@id": "otu13", "@about": "#otu13", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Tricorythodes cubensis"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 5013838}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Tricorythodes cubensis"}]}, {"@id": "otu14", "@about": "#otu14", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Tricorythodes montanus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 5013814}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Tricorythodes montanus"}]}, {"@id": "otu15", "@about": "#otu15", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Tricorythodes molinerii"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 5013818}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Tricorythodes molinerii"}]}, {"@id": "otu16", "@about": "#otu16", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Tricorythodes yura"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 5013810}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Tricorythodes yura"}]}, {"@id": "otu17", "@about": "#otu17", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Cabecar serratus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 4175425}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Cabecar serratus"}]}, {"@id": "otu18", "@about": "#otu18", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Tricorythodes hiemalis"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 5013833}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Tricorythodes hiemalis"}]}, {"@id": "otu19", "@about": "#otu19", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Tricorythodes caunapi"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 6322059}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Tricorythodes caunapi"}]}, {"@id": "otu2", "@about": "#otu2", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Haplohyphes aquilonius"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 3006073}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Haplohyphes aquilonius"}]}, {"@id": "otu20", "@about": "#otu20", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Tricorythodes quizeri"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 5013840}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Tricorythodes quizeri"}]}, {"@id": "otu21", "@about": "#otu21", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Tricorythodes popayanicus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 5013828}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Tricorythodes popayanicus"}]}, {"@id": "otu3", "@about": "#otu3", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Haplohyphes baritu"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 5013884}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Haplohyphes baritu"}]}, {"@id": "otu4", "@about": "#otu4", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Leptohyphodes inanis"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 5013877}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Leptohyphodes inanis"}]}, {"@id": "otu5", "@about": "#otu5", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Tricorythodes barbus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 5013830}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Tricorythodes barbus"}]}, {"@id": "otu6", "@about": "#otu6", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Tricorythodes dimorphus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 3006055}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Tricorythodes dimorphus"}]}, {"@id": "otu7", "@about": "#otu7", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Tricorythodes santarita"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 5013843}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Tricorythodes santarita"}]}, {"@id": "otu8", "@about": "#otu8", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Macunahyphes australis"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 5013902}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Macunahyphes australis"}]}, {"@id": "otu9", "@about": "#otu9", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Tricorythodes bullus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 5013839}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Tricorythodes bullus"}]}], "@about": "#otus1"}, "trees": {"@otus": "otus1", "@id": "trees1", "tree": [{"@label": "Fig. 3, BI", "@xsi:type": "nex:FloatTree", "node": [{"@root": true, "@id": "node1", "@about": "#node1"}, {"@otu": "otu1", "@id": "node2", "@about": "#node2", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node3", "@about": "#node3"}, {"@id": "node13", "@about": "#node13"}, {"@id": "node14", "@about": "#node14"}, {"@otu": "otu7", "@id": "node15", "@about": "#node15", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu8", "@id": "node16", "@about": "#node16", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node17", "@about": "#node17"}, {"@id": "node18", "@about": "#node18"}, {"@id": "node19", "@about": "#node19"}, {"@otu": "otu9", "@id": "node20", "@about": "#node20", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node21", "@about": "#node21"}, {"@otu": "otu10", "@id": "node22", "@about": "#node22", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu11", "@id": "node23", "@about": "#node23", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node24", "@about": "#node24"}, {"@otu": "otu12", "@id": "node25", "@about": "#node25", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node26", "@about": "#node26"}, {"@otu": "otu13", "@id": "node27", "@about": "#node27", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node28", "@about": "#node28"}, {"@otu": "otu14", "@id": "node29", "@about": "#node29", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu15", "@id": "node30", "@about": "#node30", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node31", "@about": "#node31"}, {"@id": "node32", "@about": "#node32"}, {"@otu": "otu16", "@id": "node33", "@about": "#node33", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu17", "@id": "node34", "@about": "#node34", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node35", "@about": "#node35"}, {"@id": "node36", "@about": "#node36"}, {"@otu": "otu18", "@id": "node37", "@about": "#node37", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu19", "@id": "node38", "@about": "#node38", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node39", "@about": "#node39"}, {"@otu": "otu20", "@id": "node40", "@about": "#node40", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu21", "@id": "node41", "@about": "#node41", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node4", "@about": "#node4"}, {"@id": "node5", "@about": "#node5"}, {"@otu": "otu2", "@id": "node6", "@about": "#node6", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu3", "@id": "node7", "@about": "#node7", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node8", "@about": "#node8"}, {"@otu": "otu4", "@id": "node9", "@about": "#node9", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node10", "@about": "#node10"}, {"@otu": "otu5", "@id": "node11", "@about": "#node11", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu6", "@id": "node12", "@about": "#node12", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}], "edge": [{"@source": "node1", "@target": "node2", "@id": "edge1", "@about": "#edge1"}, {"@source": "node1", "@target": "node3", "@id": "edge2", "@about": "#edge2"}, {"@source": "node3", "@target": "node13", "@id": "edge12", "@about": "#edge12"}, {"@source": "node13", "@target": "node14", "@id": "edge13", "@about": "#edge13"}, {"@source": "node14", "@target": "node15", "@id": "edge14", "@about": "#edge14"}, {"@source": "node14", "@target": "node16", "@id": "edge15", "@about": "#edge15"}, {"@source": "node13", "@target": "node17", "@id": "edge16", "@about": "#edge16"}, {"@source": "node17", "@target": "node18", "@id": "edge17", "@about": "#edge17"}, {"@source": "node18", "@target": "node19", "@id": "edge18", "@about": "#edge18"}, {"@source": "node19", "@target": "node20", "@id": "edge19", "@about": "#edge19"}, {"@source": "node19", "@target": "node21", "@id": "edge20", "@about": "#edge20"}, {"@source": "node21", "@target": "node22", "@id": "edge21", "@about": "#edge21"}, {"@source": "node21", "@target": "node23", "@id": "edge22", "@about": "#edge22"}, {"@source": "node18", "@target": "node24", "@id": "edge23", "@about": "#edge23"}, {"@source": "node24", "@target": "node25", "@id": "edge24", "@about": "#edge24"}, {"@source": "node24", "@target": "node26", "@id": "edge25", "@about": "#edge25"}, {"@source": "node26", "@target": "node27", "@id": "edge26", "@about": "#edge26"}, {"@source": "node26", "@target": "node28", "@id": "edge27", "@about": "#edge27"}, {"@source": "node28", "@target": "node29", "@id": "edge28", "@about": "#edge28"}, {"@source": "node28", "@target": "node30", "@id": "edge29", "@about": "#edge29"}, {"@source": "node17", "@target": "node31", "@id": "edge30", "@about": "#edge30"}, {"@source": "node31", "@target": "node32", "@id": "edge31", "@about": "#edge31"}, {"@source": "node32", "@target": "node33", "@id": "edge32", "@about": "#edge32"}, {"@source": "node32", "@target": "node34", "@id": "edge33", "@about": "#edge33"}, {"@source": "node31", "@target": "node35", "@id": "edge34", "@about": "#edge34"}, {"@source": "node35", "@target": "node36", "@id": "edge35", "@about": "#edge35"}, {"@source": "node36", "@target": "node37", "@id": "edge36", "@about": "#edge36"}, {"@source": "node36", "@target": "node38", "@id": "edge37", "@about": "#edge37"}, {"@source": "node35", "@target": "node39", "@id": "edge38", "@about": "#edge38"}, {"@source": "node39", "@target": "node40", "@id": "edge39", "@about": "#edge39"}, {"@source": "node39", "@target": "node41", "@id": "edge40", "@about": "#edge40"}, {"@source": "node3", "@target": "node4", "@id": "edge3", "@about": "#edge3"}, {"@source": "node4", "@target": "node5", "@id": "edge4", "@about": "#edge4"}, {"@source": "node5", "@target": "node6", "@id": "edge5", "@about": "#edge5"}, {"@source": "node5", "@target": "node7", "@id": "edge6", "@about": "#edge6"}, {"@source": "node4", "@target": "node8", "@id": "edge7", "@about": "#edge7"}, {"@source": "node8", "@target": "node9", "@id": "edge8", "@about": "#edge8"}, {"@source": "node8", "@target": "node10", "@id": "edge9", "@about": "#edge9"}, {"@source": "node10", "@target": "node11", "@id": "edge10", "@about": "#edge10"}, {"@source": "node10", "@target": "node12", "@id": "edge11", "@about": "#edge11"}], "@id": "tree1", "@about": "#tree1", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthDescription", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthMode", "@datatype": "xsd:string", "$": "ot:undefined"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:curatedType", "@datatype": "xsd:string", "$": "Bayesian inference "}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:inGroupClade", "@datatype": "xsd:string", "$": "node3"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:nodeLabelMode", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:nodeLabelTimeUnit", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:outGroupEdge", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:specifiedRoot", "@datatype": "xsd:string", "$": "node1"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:unrootedTree", "@datatype": "xsd:boolean", "$": false}]}], "@about": "#trees1"}, "meta": [{"agent": [{"@description": "Open Tree NexSON validation", "@id": "peyotl-validator", "@name": "api.opentreeoflife.org/validate", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": [], "otherProperty": [{"name": "pythonVersion", "value": "3.10.12"}, {"name": "pythonImplementation", "value": "CPython"}]}, "@about": "#peyotl-validator"}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0", "@about": "#opentree-curation-webapp"}], "@xsi:type": "nex:LiteralMeta", "@property": "ot:agents"}, {"annotation": [{"@dateCreated": "2025-03-08T01:21:08.412Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"autoAcceptExactMatches": true, "searchContext": {"$": "Insects"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}]}, "useFuzzyMatching": false}, "refersTo": {"@top": {"$": "meta"}}}], "@about": "#otu-mapping-hints"}, {"@dateCreated": "2025-03-08T01:21:08.412Z", "@description": "Describes external namesets merged into this study", "@id": "merged-namesets-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "MERGED_NAMESET_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"namesets": {"nameset": []}}, "refersTo": {"@top": {"$": "meta"}}}], "@about": "#merged-namesets-metadata"}, {"@dateCreated": "2025-03-08T01:21:08.412Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": [{"@filename": "DiasMolineri2019Tricorythodes.nwk", "@size": 511, "@type": "newick", "@url": "/curator/download/supporting_files.doc.9d2214582e59fe31.446961734d6f6c696e65726932303139547269636f727974686f6465732e6e776b.nwk", "description": {"$": "Source data for tree(s) 'tree1'"}, "sourceForTree": [{"$": "tree1"}]}, {"@filename": "image.png", "@size": 605, "@type": "", "@url": "/curator/supporting_files/download/supporting_files.doc.be7cf5a40639a664.696d6167652e706e67.png", "description": {"$": ""}, "sourceForTree": []}, {"@filename": "image.png", "@size": 1139, "@type": "", "@url": "/curator/supporting_files/download/supporting_files.doc.8855c97b04ea479e.696d6167652e706e67.png", "description": {"$": ""}, "sourceForTree": []}, {"@filename": "image.png", "@size": 2013, "@type": "", "@url": "/curator/supporting_files/download/supporting_files.doc.a90c01e8a6f306e6.696d6167652e706e67.png", "description": {"$": ""}, "sourceForTree": []}, {"@filename": "image.png", "@size": 2466, "@type": "", "@url": "/curator/supporting_files/download/supporting_files.doc.b2fad415d2e272ba.696d6167652e706e67.png", "description": {"$": ""}, "sourceForTree": []}, {"@filename": "image.png", "@size": 5794, "@type": "", "@url": "/curator/supporting_files/download/supporting_files.doc.b4e696c3c105cd43.696d6167652e706e67.png", "description": {"$": ""}, "sourceForTree": []}]}}, "refersTo": {"@top": {"$": "meta"}}}], "@about": "#supporting-files-metadata"}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["highestMintedElementIDs"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:branchLengthTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit", "^ot:reasonsToExcludeFromSynthesis"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}], "@about": "#peyotl-validator-event"}], "@xsi:type": "nex:LiteralMeta", "@property": "ot:annotationEvents"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:comment", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:curatorName", "@datatype": "xsd:string", "$": "dchesters"}, {"@href": "", "@xsi:type": "nex:ResourceMeta", "@rel": "ot:dataDeposit"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:focalClade", "@datatype": "xsd:int", "$": 796479}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:focalCladeOTTTaxonName", "@datatype": "xsd:string", "$": "Leptohyphidae"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:studyId", "@datatype": "xsd:string", "$": "ot_2636"}, {"@href": "https://doi.org/10.1016/j.jcz.2018.10.008", "@xsi:type": "nex:ResourceMeta", "@rel": "ot:studyPublication"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:studyPublicationReference", "@datatype": "xsd:string", "$": "Dias, L. G., Molineri, C., Takiya, D., Benavides, P., & Bacca, T. (2019). Phylogeny of Tricorythodes Ulmer (Leptohyphidae: Ephemeroptera) based on molecular and morphological evidence. Zoologischer Anzeiger, 278, 38\u201345. https://doi.org/10.1016/j.jcz.2018.10.008\n"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:studyYear", "@datatype": "xsd:int", "$": 2019}]}}, "branch2sha": {"master": "c33806c9ee11db205ee8c02a42e31b1c3128e299"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "831734830882354f8883aef7746ea69f46ce1edb", "author_name": "dchesters", "author_email": "dc0357548934@live.co.uk", "date": "Sat, 8 Mar 2025 01:25:15 +0000", "date_ISO_8601": "2025-03-08 01:25:15 +0000", "relative_date": "1 year, 1 month ago", "message_subject": "Initial commit Dias, Molineri et al. (2019)", "message_body": "DiasMolineri2019Tricorythodes.nwk\nOpted for combined molecular+morphological result due to higher resolution, despite lower sampling than morphological only. Presumed misspelling: Tricorythodes dimorfus should be Tricorythodes dimorphus. Appears to be mixing of in- / out-group.\n\n(Update document 'ot_2636' via OpenTree API)"}, {"id": "1b7be9fb365085238453e75fe5406aa71a17fa1d", "author_name": "dchesters", "author_email": "dc0357548934@live.co.uk", "date": "Sat, 8 Mar 2025 01:20:55 +0000", "date_ISO_8601": "2025-03-08 01:20:55 +0000", "relative_date": "1 year, 1 month ago", "message_subject": "Update document 'ot_2636' via OpenTree API"}]}