{"sha": "c33806c9ee11db205ee8c02a42e31b1c3128e299", "data": {"nexml": {"@about": "#study", "@generator": "Open Tree API", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xhtml": "http://www.w3.org/1999/xhtml/vocab#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "Open Tree NexSON validation", "@id": "peyotl-validator", "@name": "api.opentreeoflife.org/validate", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": [], "otherProperty": [{"name": "pythonVersion", "value": "3.10.12"}, {"name": "pythonImplementation", "value": "CPython"}]}}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0"}]}, "^ot:annotationEvents": {"annotation": [{"@dateCreated": "2025-03-12T02:46:07.824Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"autoAcceptExactMatches": true, "searchContext": {"$": "Insects"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}]}, "useFuzzyMatching": false}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2025-03-12T02:46:07.824Z", "@description": "Describes external namesets merged into this study", "@id": "merged-namesets-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "MERGED_NAMESET_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"namesets": {"nameset": []}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2025-03-12T02:46:07.824Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": [{"@filename": "Dubitzky2007Anthophorini.nwk", "@size": 576, "@type": "newick", "@url": "/curator/download/supporting_files.doc.9e58b0a6ec03f074.44756269747a6b7932303037416e74686f70686f72696e692e6e776b.nwk", "description": {"$": "Source data for tree(s) 'tree1'"}, "sourceForTree": [{"$": "tree1"}]}, {"@filename": "image.png", "@size": 717, "@type": "", "@url": "/curator/supporting_files/download/supporting_files.doc.a3545beb604de865.696d6167652e706e67.png", "description": {"$": ""}, "sourceForTree": []}, {"@filename": "image.png", "@size": 831, "@type": "", "@url": "/curator/supporting_files/download/supporting_files.doc.9cb7ab915d94bc9b.696d6167652e706e67.png", "description": {"$": ""}, "sourceForTree": []}, {"@filename": "image.png", "@size": 1464, "@type": "", "@url": "/curator/supporting_files/download/supporting_files.doc.a50ebe52d0291efc.696d6167652e706e67.png", "description": {"$": ""}, "sourceForTree": []}, {"@filename": "image.png", "@size": 2105, "@type": "", "@url": "/curator/supporting_files/download/supporting_files.doc.afafccdf74c80229.696d6167652e706e67.png", "description": {"$": ""}, "sourceForTree": []}, {"@filename": "image.png", "@size": 1601, "@type": "", "@url": "/curator/supporting_files/download/supporting_files.doc.815e4b0f8f2e2a0d.696d6167652e706e67.png", "description": {"$": ""}, "sourceForTree": []}]}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu23", "otu3", "otu4", "otu5", "otu9"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["highestMintedElementIDs"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:branchLengthTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit", "^ot:reasonsToExcludeFromSynthesis"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:ottId"], "refersTo": {"@top": "otus", "@idref": ["otu23", "otu3", "otu4", "otu5", "otu9"], "@otusID": "otus1", "@otuID": ["otu23", "otu3", "otu4", "otu5", "otu9"]}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": [], "^ot:comment": "", "^ot:curatorName": ["dchesters"], "^ot:dataDeposit": {"@href": ""}, "^ot:focalClade": 434959, "^ot:focalCladeOTTTaxonName": "Anthophorini", "^ot:otusElementOrder": ["otus1"], "^ot:studyId": "ot_2664", "^ot:studyPublication": {"@href": "https://doi.org/10.1111/j.1365-3113.2007.00397.x"}, "^ot:studyPublicationReference": "DUBITZKY, A. (2007). Phylogeny of the World Anthophorini (Hymenoptera: Apoidea: Apidae). Systematic Entomology, 32(4), 585\u2013600. Portico. https://doi.org/10.1111/j.1365-3113.2007.00397.x\n", "^ot:studyYear": 2007, "^ot:tag": [], "^ot:treesElementOrder": ["trees1"], "highestMintedElementIDs": {"agent": 0, "annotation": 0, "edge": 48, "message": 0, "node": 49, "otu": 26, "otus": 2, "tree": 1, "trees": 2}, "otusById": {"otus1": {"otuById": {"otu1": {"^ot:originalLabel": "Centris decolorata", "^ot:ottId": 309488, "^ot:ottTaxonName": "Centris decolorata"}, "otu10": {"^ot:originalLabel": "Deltoptila elefas", "^ot:ottId": 3267567, "^ot:ottTaxonName": "Deltoptila elefas"}, "otu11": {"^ot:originalLabel": "Pachymelopsis conspicuus", "^ot:ottId": 4528640, "^ot:ottTaxonName": "Pachymelus conspicuus"}, "otu12": {"^ot:originalLabel": "Pachymelus radovae", "^ot:ottId": 4528624, "^ot:ottTaxonName": "Pachymelus radovae"}, "otu13": {"^ot:originalLabel": "Amegilla byssina", "^ot:ottId": 3268100, "^ot:ottTaxonName": "Amegilla byssina"}, "otu14": {"^ot:originalLabel": "Amegilla quadrifasciata", "^ot:ottId": 3268039, "^ot:ottTaxonName": "Amegilla quadrifasciata"}, "otu15": {"^ot:originalLabel": "Amegilla zonata", "^ot:ottId": 3267919, "^ot:ottTaxonName": "Amegilla zonata"}, "otu16": {"^ot:originalLabel": "Amegilla urens", "^ot:ottId": 3268002, "^ot:ottTaxonName": "Amegilla urens"}, "otu17": {"^ot:originalLabel": "Amegilla albigena", "^ot:ottId": 3268185, "^ot:ottTaxonName": "Amegilla albigena"}, "otu18": {"^ot:originalLabel": "Anthophora retusa", "^ot:ottId": 3267985, "^ot:ottTaxonName": "Anthophora retusa"}, "otu19": {"^ot:originalLabel": "Anthophora furcata", "^ot:ottId": 524516, "^ot:ottTaxonName": "Anthophora furcata"}, "otu2": {"^ot:originalLabel": "Habrophorula nubilipennis", "^ot:ottId": 4529884, "^ot:ottTaxonName": "Habrophorula nubilipennis"}, "otu20": {"^ot:originalLabel": "Anthophora bimaculata", "^ot:ottId": 3267929, "^ot:ottTaxonName": "Anthophora bimaculata"}, "otu21": {"^ot:originalLabel": "Anthophora borealis", "^ot:ottId": 3267711, "^ot:ottTaxonName": "Anthophora borealis"}, "otu22": {"^ot:originalLabel": "Anthophora quadrimaculata", "^ot:ottId": 3267691, "^ot:ottTaxonName": "Anthophora quadrimaculata"}, "otu23": {"^ot:originalLabel": "Anthophora plumipes"}, "otu24": {"^ot:originalLabel": "Anthophora dispar", "^ot:ottId": 3267732, "^ot:ottTaxonName": "Anthophora dispar"}, "otu25": {"^ot:originalLabel": "Anthophora dufourii", "^ot:ottId": 3267820, "^ot:ottTaxonName": "Anthophora dufourii"}, "otu26": {"^ot:originalLabel": "Anthophora crassipes", "^ot:ottId": 3267602, "^ot:ottTaxonName": "Anthophora crassipes"}, "otu3": {"^ot:originalLabel": "Elaphropda percarinata"}, "otu4": {"^ot:originalLabel": "Elaphropoda moelleri"}, "otu5": {"^ot:originalLabel": "Habropoda cineraria"}, "otu6": {"^ot:originalLabel": "Habropoda zonatula", "^ot:ottId": 4528606, "^ot:ottTaxonName": "Habropoda zonatula"}, "otu7": {"^ot:originalLabel": "Habropoda radoszkowskii", "^ot:ottId": 4528616, "^ot:ottTaxonName": "Habropoda radoszkowskii"}, "otu8": {"^ot:originalLabel": "Habropoda tarsata", "^ot:ottId": 4528603, "^ot:ottTaxonName": "Habropoda tarsata"}, "otu9": {"^ot:originalLabel": "Deltoptila montezumia"}}}}, "treesById": {"trees1": {"@otus": "otus1", "^ot:treeElementOrder": ["tree1"], "treeById": {"tree1": {"@label": "Fig. 6, MP", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:undefined", "^ot:curatedType": "Maximum parsimony ", "^ot:inGroupClade": "node3", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:reasonsToExcludeFromSynthesis": [], "^ot:rootNodeId": "node1", "^ot:specifiedRoot": "node1", "^ot:tag": [], "^ot:unrootedTree": false, "edgeBySourceId": {"node1": {"edge1": {"@source": "node1", "@target": "node2"}, "edge2": {"@source": "node1", "@target": "node3"}}, "node10": {"edge10": {"@source": "node10", "@target": "node11"}, "edge11": {"@source": "node10", "@target": "node12"}}, "node12": {"edge12": {"@source": "node12", "@target": "node13"}, "edge13": {"@source": "node12", "@target": "node14"}, "edge14": {"@source": "node12", "@target": "node15"}}, "node16": {"edge16": {"@source": "node16", "@target": "node17"}, "edge19": {"@source": "node16", "@target": "node20"}}, "node17": {"edge17": {"@source": "node17", "@target": "node18"}, "edge18": {"@source": "node17", "@target": "node19"}}, "node20": {"edge20": {"@source": "node20", "@target": "node21"}, "edge23": {"@source": "node20", "@target": "node24"}}, "node21": {"edge21": {"@source": "node21", "@target": "node22"}, "edge22": {"@source": "node21", "@target": "node23"}}, "node24": {"edge24": {"@source": "node24", "@target": "node25"}, "edge32": {"@source": "node24", "@target": "node33"}}, "node25": {"edge25": {"@source": "node25", "@target": "node26"}, "edge26": {"@source": "node25", "@target": "node27"}}, "node27": {"edge27": {"@source": "node27", "@target": "node28"}, "edge28": {"@source": "node27", "@target": "node29"}}, "node29": {"edge29": {"@source": "node29", "@target": "node30"}, "edge30": {"@source": "node29", "@target": "node31"}, "edge31": {"@source": "node29", "@target": "node32"}}, "node3": {"edge3": {"@source": "node3", "@target": "node4"}, "edge8": {"@source": "node3", "@target": "node9"}}, "node33": {"edge33": {"@source": "node33", "@target": "node34"}, "edge34": {"@source": "node33", "@target": "node35"}}, "node35": {"edge35": {"@source": "node35", "@target": "node36"}, "edge36": {"@source": "node35", "@target": "node37"}}, "node37": {"edge37": {"@source": "node37", "@target": "node38"}, "edge38": {"@source": "node37", "@target": "node39"}}, "node39": {"edge39": {"@source": "node39", "@target": "node40"}, "edge40": {"@source": "node39", "@target": "node41"}}, "node4": {"edge4": {"@source": "node4", "@target": "node5"}, "edge5": {"@source": "node4", "@target": "node6"}}, "node41": {"edge41": {"@source": "node41", "@target": "node42"}, "edge42": {"@source": "node41", "@target": "node43"}}, "node43": {"edge43": {"@source": "node43", "@target": "node44"}, "edge44": {"@source": "node43", "@target": "node45"}}, "node45": {"edge45": {"@source": "node45", "@target": "node46"}, "edge46": {"@source": "node45", "@target": "node47"}}, "node47": {"edge47": {"@source": "node47", "@target": "node48"}, "edge48": {"@source": "node47", "@target": "node49"}}, "node6": {"edge6": {"@source": "node6", "@target": "node7"}, "edge7": {"@source": "node6", "@target": "node8"}}, "node9": {"edge15": {"@source": "node9", "@target": "node16"}, "edge9": {"@source": "node9", "@target": "node10"}}}, "nodeById": {"node1": {"@root": true}, "node10": {}, "node11": {"@otu": "otu5"}, "node12": {}, "node13": {"@otu": "otu6"}, "node14": {"@otu": "otu7"}, "node15": {"@otu": "otu8"}, "node16": {}, "node17": {}, "node18": {"@otu": "otu9"}, "node19": {"@otu": "otu10"}, "node2": {"@otu": "otu1"}, "node20": {}, "node21": {}, "node22": {"@otu": "otu11"}, "node23": {"@otu": "otu12"}, "node24": {}, "node25": {}, "node26": {"@otu": "otu13"}, "node27": {}, "node28": {"@otu": "otu14"}, "node29": {}, "node3": {}, "node30": {"@otu": "otu15"}, "node31": {"@otu": "otu16"}, "node32": {"@otu": "otu17"}, "node33": {}, "node34": {"@otu": "otu18"}, "node35": {}, "node36": {"@otu": "otu19"}, "node37": {}, "node38": {"@otu": "otu20"}, "node39": {}, "node4": {}, "node40": {"@otu": "otu21"}, "node41": {}, "node42": {"@otu": "otu22"}, "node43": {}, "node44": {"@otu": "otu23"}, "node45": {}, "node46": {"@otu": "otu24"}, "node47": {}, "node48": {"@otu": "otu25"}, "node49": {"@otu": "otu26"}, "node5": {"@otu": "otu2"}, "node6": {}, "node7": {"@otu": "otu3"}, "node8": {"@otu": "otu4"}, "node9": {}}}}}}}}, "branch2sha": {"master": "c33806c9ee11db205ee8c02a42e31b1c3128e299"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "98855411875af3661abdf94ec247396669c38799", "author_name": "dchesters", "author_email": "dc0357548934@live.co.uk", "date": "Wed, 12 Mar 2025 02:48:08 +0000", "date_ISO_8601": "2025-03-12 02:48:08 +0000", "relative_date": "1 year, 1 month ago", "message_subject": "Initial commit Dubitzky (2007)", "message_body": "Dubitzky2007Anthophorini.nwk\nA couple of trifurcations.\n\n(Update document 'ot_2664' via OpenTree API)"}, {"id": "cef618f3444fc5afaf4a7a28e784a9e5a2558cee", "author_name": "dchesters", "author_email": "dc0357548934@live.co.uk", "date": "Wed, 12 Mar 2025 02:46:03 +0000", "date_ISO_8601": "2025-03-12 02:46:03 +0000", "relative_date": "1 year, 1 month ago", "message_subject": "Update document 'ot_2664' via OpenTree API"}]}