{"sha": "19ec8a2da4b35c55075f155f9fb4d01281774fe5", "data": {"nexml": {"@generator": "org.nexml.model.impl.DocumentImpl", "@id": "S679", "@nexml2json": "1.2.1", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "dc": "http://purl.org/dc/elements/1.1/", "dcterms": "http://purl.org/dc/terms/", "nex": "http://www.nexml.org/2009", "prism": "http://prismstandard.org/namespaces/1.2/basic/", "rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#", "rdfs": "http://www.w3.org/2000/01/rdf-schema#", "skos": "http://www.w3.org/2004/02/skos/core#", "tb": "http://purl.org/phylo/treebase/2.0/terms#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^dc:contributor": ["Brasier C.", "Wagels G.", "Duncan J.", "Drenth A.", "Cooke D."], "^dc:creator": "Cooke D., Drenth A., Duncan J., Wagels G., & Brasier C.", "^dc:date": "2000-08-04", "^dc:publisher": "Fungal Genetics and Biology", "^dc:subject": "evolution; rDNA; internal transcribed spacers; ITS; Pythium; Peronospora", "^dc:title": "A molecular phylogeny of Phytophthora and related Oomycetes.", "^dcterms:bibliographicCitation": "Cooke D., Drenth A., Duncan J., Wagels G., & Brasier C. 2000. A molecular phylogeny of Phytophthora and related Oomycetes. Fungal Genetics and Biology, 30(1): 17-32.", "^ot:agents": {"agent": [{"@description": "Open Tree NexSON validation", "@id": "peyotl-validator", "@name": "api.opentreeoflife.org/validate", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": [], "otherProperty": [{"name": "pythonVersion", "value": "2.7.3"}, {"name": "pythonImplementation", "value": "CPython"}]}}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0"}]}, "^ot:annotationEvents": {"annotation": [{"@dateCreated": "2014-06-24T01:38:07.844Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"searchContext": {"$": "All life"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}]}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2014-06-24T01:38:07.843Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": []}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "UNRECOGNIZED_KEY", "data": ["^dc:contributor", "^dc:creator", "^dc:date", "^dc:publisher", "^dc:subject", "^dc:title", "^dcterms:bibliographicCitation", "^ot:comment", "^prism:creationDate", "^prism:doi", "^prism:endingPage", "^prism:modificationDate", "^prism:number", "^prism:pageRange", "^prism:publicationDate", "^prism:publicationName", "^prism:section", "^prism:startingPage", "^prism:volume", "^skos:changeNote", "^skos:historyNote", "^tb:identifier.study", "^tb:identifier.study.tb1"], "refersTo": {"@top": "nexml", "@idref": "S679"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "Tb5793", "@treesID": "Tb5793"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^skos:historyNote"], "refersTo": {"@top": "trees", "@idref": "Tb5793", "@treesID": "Tb5793"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^skos:prefLabel"], "refersTo": {"@top": "otus", "@idref": "Tl120001", "@otusID": "Tls10440", "@otuID": "Tl120001"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^skos:prefLabel"], "refersTo": {"@top": "otus", "@idref": "Tl120002", "@otusID": "Tls10440", "@otuID": "Tl120002"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^skos:prefLabel"], "refersTo": {"@top": "otus", "@idref": "Tl55130", "@otusID": "Tls10440", "@otuID": "Tl55130"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^skos:prefLabel"], "refersTo": {"@top": "otus", "@idref": "Tl55133", "@otusID": "Tls10440", "@otuID": "Tl55133"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "otus", "@idref": "Tls10440", "@otusID": "Tls10440"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["Tl55123", "Tl55132"], "refersTo": {"@top": "otus", "@idref": "Tls10440", "@otusID": "Tls10440"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^skos:historyNote"], "refersTo": {"@top": "otus", "@idref": "Tls10440", "@otusID": "Tls10440"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "Tn258226", "@treesID": "Tb5793", "@treeID": "Tr3687", "@nodeID": "Tn258226"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "Tn258316", "@treesID": "Tb5793", "@treeID": "Tr3688", "@nodeID": "Tn258316"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "Tn258319", "@treesID": "Tb5793", "@treeID": "Tr3688", "@nodeID": "Tn258319"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:branchLengthMode"], "refersTo": {"@top": "trees", "@idref": "Tr3687", "@treesID": "Tb5793", "@treeID": "Tr3687"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^tb:kind.tree", "^tb:ntax.tree", "^tb:quality.tree", "^tb:type.tree"], "refersTo": {"@top": "trees", "@idref": "Tr3687", "@treesID": "Tb5793", "@treeID": "Tr3687"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:branchLengthMode"], "refersTo": {"@top": "trees", "@idref": "Tr3688", "@treesID": "Tb5793", "@treeID": "Tr3688"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^tb:kind.tree", "^tb:ntax.tree", "^tb:quality.tree", "^tb:type.tree"], "refersTo": {"@top": "trees", "@idref": "Tr3688", "@treesID": "Tb5793", "@treeID": "Tr3688"}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": ["Tr3688", "Tr3687"], "^ot:comment": "", "^ot:curatorName": ["Dail Laughinghouse"], "^ot:dataDeposit": {"@href": "http://purl.org/phylo/treebase/phylows/study/TB2:S679"}, "^ot:focalClade": 555765, "^ot:focalCladeOTTTaxonName": "Oomycota", "^ot:messages": {"message": []}, "^ot:notIntendedForSynthesis": false, "^ot:otusElementOrder": ["Tls10440"], "^ot:studyId": "ot_26", "^ot:studyPublication": {"@href": "http://dx.doi.org/10.1006/fgbi.2000.1202"}, "^ot:studyPublicationReference": "Cooke D., Drenth A., Duncan J., Wagels G., & Brasier C. 2000. A molecular phylogeny of Phytophthora and related Oomycetes. Fungal Genetics and Biology, 30(1): 17-32.", "^ot:studyYear": 2000, "^ot:tag": [], "^ot:taxonLinkPrefixes": {"@ubio": "http://www.ubio.org/authority/metadata.php?lsid=urn:lsid:ubio.org:namebank:", "@uniprot": "http://purl.uniprot.org/taxonomy/"}, "^ot:treesElementOrder": ["Tb5793"], "^prism:creationDate": "2000-08-04", "^prism:doi": "10.1006/fgbi.2000.1202", "^prism:endingPage": "32", "^prism:modificationDate": "2000-08-04", "^prism:number": "1", "^prism:pageRange": "17-32", "^prism:publicationDate": "2000", "^prism:publicationName": "Fungal Genetics and Biology", "^prism:section": "Study", "^prism:startingPage": "17", "^prism:volume": "30", "^skos:changeNote": "Generated on Mon Jun 23 21:38:00 EDT 2014", "^skos:historyNote": "Mapped from TreeBASE schema using org.cipres.treebase.domain.nexus.nexml.NexmlDocumentWriter@72afd02e $Rev: 1060 $", "^tb:identifier.study": "679", "^tb:identifier.study.tb1": "S516", "^xhtml:license": {"@href": "http://creativecommons.org/publicdomain/zero/1.0/"}, "otusById": {"Tls10440": {"@label": "TaxonLabelSet10440", "^skos:historyNote": "Mapped from TreeBASE schema using org.cipres.treebase.domain.nexus.nexml.NexmlOTUWriter@6665ba6c $Rev: 1040 $", "otuById": {"Tl119959": {"^ot:originalLabel": "Phytophthora syringae", "^ot:ottId": 740158, "^ot:ottTaxonName": "Phytophthora syringae", "^ot:taxonLink": {"@tb:identifier.taxon": 22304, "@tb:identifier.taxonVariant": 51889, "@ubio": "3098457", "@uniprot": "67594"}}, "Tl119960": {"^ot:originalLabel": "Phytophthora botryosa", "^ot:ottId": 609883, "^ot:ottTaxonName": "Phytophthora botryosa", "^ot:taxonLink": {"@tb:identifier.taxon": 22251, "@tb:identifier.taxonVariant": 51780, "@ubio": "3214421", "@uniprot": "129348"}}, "Tl119961": {"^ot:originalLabel": "Phytophthora melonis", "^ot:ottId": 262028, "^ot:ottTaxonName": "Phytophthora melonis", "^ot:taxonLink": {"@tb:identifier.taxon": 22286, "@tb:identifier.taxonVariant": 51855, "@ubio": "3199277", "@uniprot": "120023"}}, "Tl119962": {"^ot:originalLabel": "Phytophthora arecae", "^ot:ottId": 609884, "^ot:ottTaxonName": "Phytophthora arecae", "^ot:taxonLink": {"@tb:identifier.taxon": 22249, "@tb:identifier.taxonVariant": 51777, "@ubio": "3102210", "@uniprot": "129347"}}, "Tl119963": {"^ot:originalLabel": "Thraustotheca clavata", "^ot:ottId": 965750, "^ot:ottTaxonName": "Thraustotheca clavata", "^ot:taxonLink": {"@tb:identifier.taxon": 29064, "@tb:identifier.taxonVariant": 67736, "@ubio": "3132356", "@uniprot": "74557"}}, "Tl119964": {"^ot:originalLabel": "Saprolegnia ferax", "^ot:ottId": 923646, "^ot:ottTaxonName": "Saprolegnia ferax", "^ot:taxonLink": {"@tb:identifier.taxon": 26119, "@tb:identifier.taxonVariant": 61102, "@ubio": "3871508", "@uniprot": "4770"}}, "Tl119965": {"^ot:originalLabel": "Phytophthora multivesiculata", "^ot:ottId": 88501, "^ot:ottTaxonName": "Phytophthora multivesiculata", "^ot:taxonLink": {"@tb:identifier.taxon": 22288, "@tb:identifier.taxonVariant": 51859, "@ubio": "3284004", "@uniprot": "129357"}}, "Tl119966": {"^ot:originalLabel": "Phytophthora tentaculata", "^ot:ottId": 662695, "^ot:ottTaxonName": "Phytophthora tentaculata", "^ot:taxonLink": {"@tb:identifier.taxon": 22305, "@tb:identifier.taxonVariant": 51891, "@ubio": "3232802", "@uniprot": "129362"}}, "Tl119968": {"^ot:originalLabel": "Phytophthora infestans", "^ot:ottId": 5279502, "^ot:ottTaxonName": "Phytophthora infestans (species if:232148 in Stramenopiles)", "^ot:taxonLink": {"@tb:identifier.taxon": 22275, "@tb:identifier.taxonVariant": 51833, "@ubio": "3871566", "@uniprot": "4787"}}, "Tl119969": {"^ot:originalLabel": "Phytophthora cajani", "^ot:ottId": 609882, "^ot:ottTaxonName": "Phytophthora cajani", "^ot:taxonLink": {"@tb:identifier.taxon": 22254, "@tb:identifier.taxonVariant": 51786, "@ubio": "3199266", "@uniprot": "129349"}}, "Tl119970": {"^ot:originalLabel": "Pythium aphanidermatum", "^ot:ottId": 504920, "^ot:ottTaxonName": "Pythium aphanidermatum", "^ot:taxonLink": {"@tb:identifier.taxon": 24651, "@tb:identifier.taxonVariant": 57745, "@ubio": "5956106", "@uniprot": "65070"}}, "Tl119972": {"^ot:originalLabel": "Phytophthora sojae", "^ot:ottId": 740156, "^ot:ottTaxonName": "Phytophthora sojae", "^ot:taxonLink": {"@tb:identifier.taxon": 22303, "@tb:identifier.taxonVariant": 51888, "@ubio": "3184330", "@uniprot": "67593"}}, "Tl119973": {"^ot:originalLabel": "Phytophthora cambivora", "^ot:ottId": 152479, "^ot:ottTaxonName": "Phytophthora cambivora", "^ot:taxonLink": {"@tb:identifier.taxon": 22255, "@tb:identifier.taxonVariant": 51789, "@ubio": "3145584", "@uniprot": "53983"}}, "Tl119974": {"^ot:originalLabel": "Phytophthora vignae", "^ot:ottId": 740159, "^ot:ottTaxonName": "Phytophthora vignae", "^ot:taxonLink": {"@tb:identifier.taxon": 22308, "@tb:identifier.taxonVariant": 51897, "@ubio": "3184331", "@uniprot": "67595"}}, "Tl119975": {"^ot:originalLabel": "Phytophthora phaseoli", "^ot:ottId": 88502, "^ot:ottTaxonName": "Phytophthora phaseoli", "^ot:taxonLink": {"@tb:identifier.taxon": 22292, "@tb:identifier.taxonVariant": 51867, "@ubio": "3098419", "@uniprot": "129358"}}, "Tl119976": {"^ot:originalLabel": "Phytophthora insolita", "^ot:ottId": 1070126, "^ot:ottTaxonName": "Phytophthora insolita", "^ot:taxonLink": {"@tb:identifier.taxon": 22277, "@tb:identifier.taxonVariant": 51837, "@ubio": "3029151", "@uniprot": "127442"}}, "Tl119977": {"^ot:originalLabel": "Pythium graminicola", "^ot:ottId": 223258, "^ot:ottTaxonName": "Pythium graminicola", "^ot:taxonLink": {"@tb:identifier.taxon": 24659, "@tb:identifier.taxonVariant": 57761, "@ubio": "3034561", "@uniprot": "82937"}}, "Tl119978": {"^ot:originalLabel": "Phytophthora cactorum", "^ot:ottId": 710888, "^ot:ottTaxonName": "Phytophthora cactorum", "^ot:taxonLink": {"@tb:identifier.taxon": 22253, "@tb:identifier.taxonVariant": 51784, "@ubio": "3102354", "@uniprot": "29920"}}, "Tl119979": {"^ot:originalLabel": "Phytophthora humicola", "^ot:ottId": 88466, "^ot:ottTaxonName": "Phytophthora humicola", "^ot:taxonLink": {"@tb:identifier.taxon": 22272, "@tb:identifier.taxonVariant": 51826, "@ubio": "3022860", "@uniprot": "129352"}}, "Tl119980": {"^ot:originalLabel": "Phytophthora cryptogea", "^ot:ottId": 775732, "^ot:ottTaxonName": "Phytophthora cryptogea", "^ot:taxonLink": {"@tb:identifier.taxon": 22262, "@tb:identifier.taxonVariant": 51803, "@ubio": "3129314", "@uniprot": "4786"}}, "Tl119981": {"^ot:originalLabel": "Phytophthora clandestina", "^ot:ottId": 103293, "^ot:ottTaxonName": "Phytophthora clandestina", "^ot:taxonLink": {"@tb:identifier.taxon": 22260, "@tb:identifier.taxonVariant": 51799, "@ubio": "3022859", "@uniprot": "89334"}}, "Tl119982": {"^ot:originalLabel": "Phytophthora gonapodyides", "^ot:ottId": 23193, "^ot:ottTaxonName": "Phytophthora gonapodyides", "^ot:taxonLink": {"@tb:identifier.taxon": 22269, "@tb:identifier.taxonVariant": 51819, "@ubio": "3146561", "@uniprot": "78237"}}, "Tl119983": {"^ot:originalLabel": "Pythium dissotocum", "^ot:ottId": 231820, "^ot:ottTaxonName": "Pythium dissotocum", "^ot:taxonLink": {"@tb:identifier.taxon": 24658, "@tb:identifier.taxonVariant": 57757, "@ubio": "3154075", "@uniprot": "82936"}}, "Tl119984": {"^ot:originalLabel": "Phytophthora nicotianae", "^ot:ottId": 524651, "^ot:ottTaxonName": "Phytophthora nicotianae", "^ot:taxonLink": {"@tb:identifier.taxon": 22290, "@tb:identifier.taxonVariant": 51862, "@ubio": "3098392", "@uniprot": "4790"}}, "Tl119985": {"^ot:originalLabel": "Phytophthora lateralis", "^ot:ottId": 88499, "^ot:ottTaxonName": "Phytophthora lateralis", "^ot:taxonLink": {"@tb:identifier.taxon": 22281, "@tb:identifier.taxonVariant": 51845, "@ubio": "3172454", "@uniprot": "129355"}}, "Tl119986": {"^ot:originalLabel": "Phytophthora medicaginis", "^ot:ottId": 856913, "^ot:ottTaxonName": "Phytophthora medicaginis", "^ot:taxonLink": {"@tb:identifier.taxon": 22283, "@tb:identifier.taxonVariant": 51849, "@ubio": "3041871", "@uniprot": "54510"}}, "Tl119987": {"^ot:originalLabel": "Phytophthora megakarya", "^ot:ottId": 252692, "^ot:ottTaxonName": "Phytophthora megakarya", "^ot:taxonLink": {"@tb:identifier.taxon": 22284, "@tb:identifier.taxonVariant": 51850, "@ubio": "3199276", "@uniprot": "4795"}}, "Tl119988": {"^ot:originalLabel": "Phytophthora primulae", "^ot:ottId": 662694, "^ot:ottTaxonName": "Phytophthora primulae", "^ot:taxonLink": {"@tb:identifier.taxon": 22295, "@tb:identifier.taxonVariant": 51872, "@ubio": "3184329", "@uniprot": "129360"}}, "Tl119989": {"^ot:originalLabel": "Dictyuchus sterilis", "^ot:ottId": 490431, "^ot:ottTaxonName": "Dictyuchus sterilis", "^ot:taxonLink": {"@tb:identifier.taxon": 9016, "@tb:identifier.taxonVariant": 21684, "@ubio": "3164132", "@uniprot": "74560"}}, "Tl119990": {"^ot:originalLabel": "Pythium vexans", "^ot:ottId": 395907, "^ot:ottTaxonName": "Pythium vexans", "^ot:taxonLink": {"@tb:identifier.taxon": 24688, "@tb:identifier.taxonVariant": 57819, "@ubio": "3081483", "@uniprot": "42099"}}, "Tl119991": {"^ot:originalLabel": "Phytophthora ilicis", "^ot:ottId": 103294, "^ot:ottTaxonName": "Phytophthora ilicis", "^ot:taxonLink": {"@tb:identifier.taxon": 22274, "@tb:identifier.taxonVariant": 51830, "@ubio": "3184327", "@uniprot": "89335"}}, "Tl119992": {"^ot:originalLabel": "Phytophthora cinnamomi", "^ot:ottId": 775735, "^ot:ottTaxonName": "Phytophthora cinnamomi", "^ot:taxonLink": {"@tb:identifier.taxon": 22257, "@tb:identifier.taxonVariant": 51792, "@ubio": "3152472", "@uniprot": "4785"}}, "Tl119993": {"^ot:originalLabel": "Phytophthora richardiae", "^ot:ottId": 1070127, "^ot:ottTaxonName": "Phytophthora richardiae", "^ot:taxonLink": {"@tb:identifier.taxon": 22301, "@tb:identifier.taxonVariant": 51883, "@ubio": "3162627", "@uniprot": "127443"}}, "Tl119994": {"^ot:originalLabel": "Pythium undulatum", "^ot:ottId": 1070160, "^ot:ottTaxonName": "Pythium undulatum", "^ot:taxonLink": {"@tb:identifier.taxon": 24686, "@tb:identifier.taxonVariant": 57815, "@ubio": "3081189", "@uniprot": "127444"}}, "Tl119995": {"^ot:originalLabel": "Phytophthora erythroseptica", "^ot:ottId": 552580, "^ot:ottTaxonName": "Phytophthora erythroseptica", "^ot:taxonLink": {"@tb:identifier.taxon": 22264, "@tb:identifier.taxonVariant": 51806, "@ubio": "3129370", "@uniprot": "111171"}}, "Tl119996": {"^ot:originalLabel": "Phytophthora palmivora", "^ot:ottId": 405030, "^ot:ottTaxonName": "Phytophthora palmivora", "^ot:taxonLink": {"@tb:identifier.taxon": 22291, "@tb:identifier.taxonVariant": 51865, "@ubio": "3098523", "@uniprot": "4796"}}, "Tl119998": {"^ot:originalLabel": "Phytophthora colocasiae", "^ot:ottId": 88463, "^ot:ottTaxonName": "Phytophthora colocasiae", "^ot:taxonLink": {"@tb:identifier.taxon": 22261, "@tb:identifier.taxonVariant": 51801, "@ubio": "3129699", "@uniprot": "129350"}}, "Tl120000": {"^ot:originalLabel": "Phytophthora katsurae", "^ot:ottId": 88498, "^ot:ottTaxonName": "Phytophthora katsurae", "^ot:taxonLink": {"@tb:identifier.taxon": 22280, "@tb:identifier.taxonVariant": 51843, "@ubio": "3199274", "@uniprot": "129354"}}, "Tl120001": {"^ot:originalLabel": "Pythium irregulare", "^ot:ottId": 1004830, "^ot:ottTaxonName": "Pythium irregulare", "^ot:taxonLink": {"@tb:identifier.taxon": 24650, "@tb:identifier.taxonVariant": 57741, "@ubio": "7205604", "@uniprot": "4797"}, "^skos:prefLabel": "Pythium"}, "Tl120002": {"^ot:originalLabel": "Pythium ultimum", "^ot:ottId": 504918, "^ot:ottTaxonName": "Pythium ultimum", "^ot:taxonLink": {"@tb:identifier.taxon": 24685, "@tb:identifier.taxonVariant": 57812, "@ubio": "5956107", "@uniprot": "431595"}, "^skos:prefLabel": "Pythium ultimum DAOM BR144"}, "Tl120003": {"^ot:originalLabel": "Phytophthora iranica", "^ot:ottId": 740155, "^ot:ottTaxonName": "Phytophthora iranica", "^ot:taxonLink": {"@tb:identifier.taxon": 22279, "@tb:identifier.taxonVariant": 51840, "@ubio": "3199272", "@uniprot": "67592"}}, "Tl120004": {"^ot:originalLabel": "Phytophthora megasperma", "^ot:ottId": 775722, "^ot:ottTaxonName": "Phytophthora megasperma", "^ot:taxonLink": {"@tb:identifier.taxon": 22285, "@tb:identifier.taxonVariant": 51853, "@ubio": "3158893", "@uniprot": "4788"}}, "Tl120005": {"^ot:originalLabel": "Phytophthora mirabilis", "^ot:ottId": 88500, "^ot:ottTaxonName": "Phytophthora mirabilis", "^ot:taxonLink": {"@tb:identifier.taxon": 22287, "@tb:identifier.taxonVariant": 51857, "@ubio": "3042176", "@uniprot": "129356"}}, "Tl120006": {"^ot:originalLabel": "Phytophthora capsici", "^ot:ottId": 5279506, "^ot:ottTaxonName": "Phytophthora capsici (species ncbi:4784 in Stramenopiles)", "^ot:taxonLink": {"@tb:identifier.taxon": 22256, "@tb:identifier.taxonVariant": 51790, "@ubio": "3151703", "@uniprot": "4784"}}, "Tl120007": {"^ot:originalLabel": "Phytophthora idaei", "^ot:ottId": 152484, "^ot:ottTaxonName": "Phytophthora idaei", "^ot:taxonLink": {"@tb:identifier.taxon": 22273, "@tb:identifier.taxonVariant": 51828, "@ubio": "3235784", "@uniprot": "53986"}}, "Tl120008": {"^ot:originalLabel": "Phytophthora quercina", "^ot:ottId": 23194, "^ot:ottTaxonName": "Phytophthora quercina", "^ot:taxonLink": {"@tb:identifier.taxon": 22299, "@tb:identifier.taxonVariant": 51880, "@ubio": "1452620", "@uniprot": "78236"}}, "Tl120009": {"^ot:originalLabel": "Phytophthora heveae", "^ot:ottId": 88464, "^ot:ottTaxonName": "Phytophthora heveae", "^ot:taxonLink": {"@tb:identifier.taxon": 22270, "@tb:identifier.taxonVariant": 51821, "@ubio": "3146693", "@uniprot": "129351"}}, "Tl120010": {"^ot:originalLabel": "Phytophthora inflata", "^ot:ottId": 88468, "^ot:ottTaxonName": "Phytophthora inflata", "^ot:taxonLink": {"@tb:identifier.taxon": 22276, "@tb:identifier.taxonVariant": 51835, "@ubio": "3172453", "@uniprot": "129353"}}, "Tl120012": {"^ot:originalLabel": "Phytophthora citricola", "^ot:ottId": 152480, "^ot:ottTaxonName": "Phytophthora citricola", "^ot:taxonLink": {"@tb:identifier.taxon": 22258, "@tb:identifier.taxonVariant": 51794, "@ubio": "3152527", "@uniprot": "53984"}}, "Tl120013": {"^ot:originalLabel": "Achlya bisexualis", "^ot:ottId": 555788, "^ot:ottTaxonName": "Achlya bisexualis", "^ot:taxonLink": {"@tb:identifier.taxon": 238, "@tb:identifier.taxonVariant": 631, "@ubio": "5952459", "@uniprot": "4766"}}, "Tl120014": {"^ot:originalLabel": "Phytophthora sinensis", "^ot:ottId": 662693, "^ot:ottTaxonName": "Phytophthora sinensis", "^ot:taxonLink": {"@tb:identifier.taxon": 22302, "@tb:identifier.taxonVariant": 51886, "@ubio": "3027615", "@uniprot": "129361"}}, "Tl120015": {"^ot:originalLabel": "Peronospora sparsa", "^ot:ottId": 380687, "^ot:ottTaxonName": "Peronospora sparsa", "^ot:taxonLink": {"@tb:identifier.taxon": 21213, "@tb:identifier.taxonVariant": 49353, "@ubio": "3055433", "@uniprot": "70743"}}, "Tl120018": {"^ot:originalLabel": "Phytophthora trifolii", "^ot:ottId": 856914, "^ot:ottTaxonName": "Phytophthora trifolii", "^ot:taxonLink": {"@tb:identifier.taxon": 22306, "@tb:identifier.taxonVariant": 51893, "@ubio": "3041872", "@uniprot": "54511"}}, "Tl120020": {"^ot:originalLabel": "Phytophthora pseudotsugae", "^ot:ottId": 152485, "^ot:ottTaxonName": "Phytophthora pseudotsugae", "^ot:taxonLink": {"@tb:identifier.taxon": 22297, "@tb:identifier.taxonVariant": 51876, "@ubio": "3024131", "@uniprot": "53987"}}, "Tl120022": {"^ot:originalLabel": "Phytophthora citrophthora", "^ot:ottId": 252699, "^ot:ottTaxonName": "Phytophthora citrophthora", "^ot:taxonLink": {"@tb:identifier.taxon": 22259, "@tb:identifier.taxonVariant": 51796, "@ubio": "3145785", "@uniprot": "4793"}}, "Tl120023": {"^ot:originalLabel": "Halophytophthora batemanensis", "^ot:ottId": 1070154, "^ot:ottTaxonName": "Halophytophthora batemanensis", "^ot:taxonLink": {"@tb:identifier.taxon": 12884, "@tb:identifier.taxonVariant": 30487, "@ubio": "3040257", "@uniprot": "127446"}}, "Tl120024": {"^ot:originalLabel": "Phytophthora drechsleri", "^ot:ottId": 405025, "^ot:ottTaxonName": "Phytophthora drechsleri", "^ot:taxonLink": {"@tb:identifier.taxon": 22263, "@tb:identifier.taxonVariant": 51805, "@ubio": "3146142", "@uniprot": "4794"}}, "Tl55109": {"^ot:originalLabel": "Phytophthora macrochlamydospora", "^ot:ottId": 740154, "^ot:ottTaxonName": "Phytophthora macrochlamydospora", "^ot:taxonLink": {"@tb:identifier.taxon": 22282, "@tb:identifier.taxonVariant": 51847, "@ubio": "3229537", "@uniprot": "67591"}}, "Tl55110": {"^ot:originalLabel": "Peronospora rubi", "^ot:ottId": 4027906, "^ot:ottTaxonName": "Peronospora rubiae", "^ot:taxonLink": {"@tb:identifier.taxon": 21205, "@tb:identifier.taxonVariant": 49339, "@ubio": "3136685"}}, "Tl55111": {"^ot:originalLabel": "Albugo candida", "^ot:ottId": 1037347, "^ot:ottTaxonName": "Albugo candida", "^ot:taxonLink": {"@tb:identifier.taxon": 752, "@tb:identifier.taxonVariant": 1850, "@ubio": "3037072", "@uniprot": "65357"}}, "Tl55112": {"^ot:originalLabel": "Achlya intricata", "^ot:ottId": 965748, "^ot:ottTaxonName": "Achlya intricata", "^ot:taxonLink": {"@tb:identifier.taxon": 239, "@tb:identifier.taxonVariant": 632, "@ubio": "3167498", "@uniprot": "74555"}}, "Tl55123": {"^ot:originalLabel": "Phytophthora sp. O group", "^ot:ottId": 775740, "^ot:ottTaxonName": "Phytophthora", "^ot:taxonLink": {"@tb:identifier.taxon": 22248, "@tb:identifier.taxonVariant": 51775, "@ubio": "2641263", "@uniprot": "4783"}}, "Tl55126": {"^ot:originalLabel": "Phytophthora porri", "^ot:ottId": 88503, "^ot:ottTaxonName": "Phytophthora porri", "^ot:taxonLink": {"@tb:identifier.taxon": 22294, "@tb:identifier.taxonVariant": 51870, "@ubio": "3161723", "@uniprot": "129359"}}, "Tl55130": {"^ot:originalLabel": "Phytophthora fragariae var. fragariae", "^ot:ottId": 152482, "^ot:ottTaxonName": "Phytophthora fragariae", "^ot:taxonLink": {"@tb:identifier.taxon": 22266, "@tb:identifier.taxonVariant": 51818, "@ubio": "1419498", "@uniprot": "53985"}, "^skos:prefLabel": "Phytophthora fragariae"}, "Tl55132": {"^ot:originalLabel": "Phytophthora sp. asparagus pathogen", "^ot:ottId": 775740, "^ot:ottTaxonName": "Phytophthora", "^ot:taxonLink": {"@tb:identifier.taxon": 22248, "@tb:identifier.taxonVariant": 51775, "@ubio": "2641263", "@uniprot": "4783"}}, "Tl55133": {"^ot:originalLabel": "Phytophthora fragariae var. rubi", "^ot:ottId": 662691, "^ot:ottTaxonName": "Phytophthora rubi", "^ot:taxonLink": {"@tb:identifier.taxon": 22268, "@tb:identifier.taxonVariant": 51816, "@ubio": "3232846", "@uniprot": "129364"}, "^skos:prefLabel": "Phytophthora rubi"}}}}, "treesById": {"Tb5793": {"@label": "Tb5793", "@otus": "Tls10440", "^ot:treeElementOrder": ["Tr3688", "Tr3687"], "^skos:historyNote": "Mapped from TreeBASE schema using org.cipres.treebase.domain.nexus.nexml.NexmlTreeBlockWriter@439d4857 $Rev: 1040 $", "treeById": {"Tr3687": {"@label": "Fig. 1", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthTimeUnit": "", "^ot:curatedType": "", "^ot:inGroupClade": "Tn258218", "^ot:outGroupEdge": "", "^ot:rootNodeId": "Tn258205", "^ot:specifiedRoot": "Tn258205", "^ot:tag": [], "^ot:unrootedTree": false, "^tb:kind.tree": "Species Tree", "^tb:ntax.tree": 26, "^tb:quality.tree": "Unrated", "^tb:type.tree": "Single", "edgeBySourceId": {"Tn258197": {"edge2473": {"@source": "Tn258197", "@target": "Tn258224"}, "edge2479": {"@source": "Tn258197", "@target": "Tn258226"}}, "Tn258201": {"edge2435": {"@source": "Tn258201", "@target": "Tn258230"}, "edge2437": {"@source": "Tn258201", "@target": "Tn258232"}}, "Tn258203": {"edge2463": {"@source": "Tn258203", "@target": "Tn258198"}, "edge2465": {"@source": "Tn258203", "@target": "Tn258235"}}, "Tn258204": {"edge2493": {"@source": "Tn258204", "@target": "Tn258245"}, "edge2503": {"@source": "Tn258204", "@target": "Tn258217"}}, "Tn258205": {"edge2427": {"@source": "Tn258205", "@target": "Tn258199"}, "edge2429": {"@source": "Tn258205", "@target": "Tn258225"}, "edge2447": {"@source": "Tn258205", "@target": "Tn258218"}}, "Tn258206": {"edge2521": {"@source": "Tn258206", "@target": "Tn258220"}, "edge2523": {"@source": "Tn258206", "@target": "Tn258216"}}, "Tn258209": {"edge2443": {"@source": "Tn258209", "@target": "Tn258200"}, "edge2445": {"@source": "Tn258209", "@target": "Tn258233"}}, "Tn258212": {"edge2483": {"@source": "Tn258212", "@target": "Tn258202"}, "edge2485": {"@source": "Tn258212", "@target": "Tn258244"}}, "Tn258215": {"edge2509": {"@source": "Tn258215", "@target": "Tn258213"}, "edge2511": {"@source": "Tn258215", "@target": "Tn258214"}}, "Tn258217": {"edge2505": {"@source": "Tn258217", "@target": "Tn258227"}, "edge2519": {"@source": "Tn258217", "@target": "Tn258206"}}, "Tn258218": {"edge2449": {"@source": "Tn258218", "@target": "Tn258222"}, "edge2471": {"@source": "Tn258218", "@target": "Tn258197"}}, "Tn258222": {"edge2451": {"@source": "Tn258222", "@target": "Tn258242"}, "edge2457": {"@source": "Tn258222", "@target": "Tn258234"}}, "Tn258224": {"edge2475": {"@source": "Tn258224", "@target": "Tn258246"}, "edge2477": {"@source": "Tn258224", "@target": "Tn258240"}}, "Tn258225": {"edge2431": {"@source": "Tn258225", "@target": "Tn258228"}, "edge2433": {"@source": "Tn258225", "@target": "Tn258201"}}, "Tn258226": {"edge2481": {"@source": "Tn258226", "@target": "Tn258212"}, "edge2491": {"@source": "Tn258226", "@target": "Tn258204"}}, "Tn258227": {"edge2507": {"@source": "Tn258227", "@target": "Tn258215"}, "edge2513": {"@source": "Tn258227", "@target": "Tn258231"}}, "Tn258231": {"edge2515": {"@source": "Tn258231", "@target": "Tn258239"}, "edge2517": {"@source": "Tn258231", "@target": "Tn258223"}}, "Tn258232": {"edge2439": {"@source": "Tn258232", "@target": "Tn258207"}, "edge2441": {"@source": "Tn258232", "@target": "Tn258209"}}, "Tn258234": {"edge2459": {"@source": "Tn258234", "@target": "Tn258210"}, "edge2461": {"@source": "Tn258234", "@target": "Tn258203"}}, "Tn258235": {"edge2467": {"@source": "Tn258235", "@target": "Tn258237"}, "edge2469": {"@source": "Tn258235", "@target": "Tn258208"}}, "Tn258236": {"edge2499": {"@source": "Tn258236", "@target": "Tn258221"}, "edge2501": {"@source": "Tn258236", "@target": "Tn258229"}}, "Tn258242": {"edge2453": {"@source": "Tn258242", "@target": "Tn258238"}, "edge2455": {"@source": "Tn258242", "@target": "Tn258219"}}, "Tn258244": {"edge2487": {"@source": "Tn258244", "@target": "Tn258241"}, "edge2489": {"@source": "Tn258244", "@target": "Tn258211"}}, "Tn258245": {"edge2495": {"@source": "Tn258245", "@target": "Tn258243"}, "edge2497": {"@source": "Tn258245", "@target": "Tn258236"}}}, "nodeById": {"Tn258197": {}, "Tn258198": {"@otu": "Tl119970"}, "Tn258199": {"@otu": "Tl55111"}, "Tn258200": {"@otu": "Tl119963"}, "Tn258201": {}, "Tn258202": {"@otu": "Tl119976"}, "Tn258203": {}, "Tn258204": {}, "Tn258205": {"@root": true}, "Tn258206": {}, "Tn258207": {"@otu": "Tl55112"}, "Tn258208": {"@otu": "Tl119977"}, "Tn258209": {}, "Tn258210": {"@otu": "Tl119994"}, "Tn258211": {"@otu": "Tl119993"}, "Tn258212": {}, "Tn258213": {"@otu": "Tl119996"}, "Tn258214": {"@otu": "Tl55110"}, "Tn258215": {}, "Tn258216": {"@otu": "Tl120006"}, "Tn258217": {}, "Tn258218": {}, "Tn258219": {"@otu": "Tl120002"}, "Tn258220": {"@otu": "Tl120004"}, "Tn258221": {"@otu": "Tl119973"}, "Tn258222": {}, "Tn258223": {"@otu": "Tl119968"}, "Tn258224": {}, "Tn258225": {}, "Tn258226": {"@label": "Phytophthora"}, "Tn258227": {}, "Tn258228": {"@otu": "Tl119964"}, "Tn258229": {"@otu": "Tl119972"}, "Tn258230": {"@otu": "Tl119989"}, "Tn258231": {}, "Tn258232": {}, "Tn258233": {"@otu": "Tl120013"}, "Tn258234": {}, "Tn258235": {}, "Tn258236": {}, "Tn258237": {"@otu": "Tl119983"}, "Tn258238": {"@otu": "Tl120001"}, "Tn258239": {"@otu": "Tl119978"}, "Tn258240": {"@otu": "Tl120023"}, "Tn258241": {"@otu": "Tl55109"}, "Tn258242": {}, "Tn258243": {"@otu": "Tl119980"}, "Tn258244": {}, "Tn258245": {}, "Tn258246": {"@otu": "Tl119990"}}}, "Tr3688": {"@label": "Fig. 2", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthTimeUnit": "", "^ot:curatedType": "", "^ot:inGroupClade": "Tn258272", "^ot:outGroupEdge": "", "^ot:rootNodeId": "Tn258272", "^ot:specifiedRoot": "Tn258272", "^ot:tag": [], "^ot:unrootedTree": false, "^tb:kind.tree": "Species Tree", "^tb:ntax.tree": 48, "^tb:quality.tree": "Unrated", "^tb:type.tree": "Single", "edgeBySourceId": {"Tn258247": {"edge2251": {"@source": "Tn258247", "@target": "Tn258326"}, "edge2253": {"@source": "Tn258247", "@target": "Tn258266"}}, "Tn258248": {"edge2235": {"@source": "Tn258248", "@target": "Tn258318"}, "edge2269": {"@source": "Tn258248", "@target": "Tn258313"}}, "Tn258249": {"edge2281": {"@source": "Tn258249", "@target": "Tn258335"}, "edge2283": {"@source": "Tn258249", "@target": "Tn258277"}}, "Tn258252": {"edge2321": {"@source": "Tn258252", "@target": "Tn258309"}, "edge2339": {"@source": "Tn258252", "@target": "Tn258271"}}, "Tn258253": {"edge2275": {"@source": "Tn258253", "@target": "Tn258314"}, "edge2285": {"@source": "Tn258253", "@target": "Tn258327"}}, "Tn258255": {"edge2311": {"@source": "Tn258255", "@target": "Tn258301"}, "edge2313": {"@source": "Tn258255", "@target": "Tn258280"}}, "Tn258258": {"edge2353": {"@source": "Tn258258", "@target": "Tn258287"}, "edge2391": {"@source": "Tn258258", "@target": "Tn258323"}}, "Tn258260": {"edge2357": {"@source": "Tn258260", "@target": "Tn258307"}, "edge2359": {"@source": "Tn258260", "@target": "Tn258293"}}, "Tn258261": {"edge2289": {"@source": "Tn258261", "@target": "Tn258295"}, "edge2291": {"@source": "Tn258261", "@target": "Tn258320"}}, "Tn258263": {"edge2399": {"@source": "Tn258263", "@target": "Tn258308"}, "edge2401": {"@source": "Tn258263", "@target": "Tn258256"}}, "Tn258267": {"edge2335": {"@source": "Tn258267", "@target": "Tn258316"}, "edge2337": {"@source": "Tn258267", "@target": "Tn258324"}}, "Tn258268": {"edge2239": {"@source": "Tn258268", "@target": "Tn258332"}, "edge2241": {"@source": "Tn258268", "@target": "Tn258278"}}, "Tn258270": {"edge2377": {"@source": "Tn258270", "@target": "Tn258317"}, "edge2379": {"@source": "Tn258270", "@target": "Tn258297"}}, "Tn258271": {"edge2341": {"@source": "Tn258271", "@target": "Tn258284"}, "edge2343": {"@source": "Tn258271", "@target": "Tn258281"}}, "Tn258272": {"edge2231": {"@source": "Tn258272", "@target": "Tn258299"}, "edge2345": {"@source": "Tn258272", "@target": "Tn258339"}, "edge2351": {"@source": "Tn258272", "@target": "Tn258258"}}, "Tn258274": {"edge2307": {"@source": "Tn258274", "@target": "Tn258257"}, "edge2309": {"@source": "Tn258274", "@target": "Tn258255"}}, "Tn258276": {"edge2265": {"@source": "Tn258276", "@target": "Tn258259"}, "edge2267": {"@source": "Tn258276", "@target": "Tn258290"}}, "Tn258278": {"edge2243": {"@source": "Tn258278", "@target": "Tn258334"}, "edge2249": {"@source": "Tn258278", "@target": "Tn258247"}}, "Tn258279": {"edge2305": {"@source": "Tn258279", "@target": "Tn258274"}, "edge2319": {"@source": "Tn258279", "@target": "Tn258252"}}, "Tn258280": {"edge2315": {"@source": "Tn258280", "@target": "Tn258305"}, "edge2317": {"@source": "Tn258280", "@target": "Tn258275"}}, "Tn258282": {"edge2367": {"@source": "Tn258282", "@target": "Tn258294"}, "edge2381": {"@source": "Tn258282", "@target": "Tn258328"}}, "Tn258287": {"edge2355": {"@source": "Tn258287", "@target": "Tn258260"}, "edge2365": {"@source": "Tn258287", "@target": "Tn258282"}}, "Tn258289": {"edge2257": {"@source": "Tn258289", "@target": "Tn258269"}, "edge2259": {"@source": "Tn258289", "@target": "Tn258322"}}, "Tn258292": {"edge2327": {"@source": "Tn258292", "@target": "Tn258312"}, "edge2333": {"@source": "Tn258292", "@target": "Tn258267"}}, "Tn258293": {"edge2361": {"@source": "Tn258293", "@target": "Tn258286"}, "edge2363": {"@source": "Tn258293", "@target": "Tn258331"}}, "Tn258294": {"edge2369": {"@source": "Tn258294", "@target": "Tn258250"}, "edge2371": {"@source": "Tn258294", "@target": "Tn258338"}}, "Tn258298": {"edge2405": {"@source": "Tn258298", "@target": "Tn258306"}, "edge2407": {"@source": "Tn258298", "@target": "Tn258340"}}, "Tn258299": {"edge2233": {"@source": "Tn258299", "@target": "Tn258248"}, "edge2303": {"@source": "Tn258299", "@target": "Tn258279"}}, "Tn258302": {"edge2299": {"@source": "Tn258302", "@target": "Tn258315"}, "edge2301": {"@source": "Tn258302", "@target": "Tn258254"}}, "Tn258309": {"edge2323": {"@source": "Tn258309", "@target": "Tn258319"}, "edge2325": {"@source": "Tn258309", "@target": "Tn258292"}}, "Tn258310": {"edge2397": {"@source": "Tn258310", "@target": "Tn258263"}, "edge2403": {"@source": "Tn258310", "@target": "Tn258298"}}, "Tn258312": {"edge2329": {"@source": "Tn258312", "@target": "Tn258330"}, "edge2331": {"@source": "Tn258312", "@target": "Tn258304"}}, "Tn258313": {"edge2271": {"@source": "Tn258313", "@target": "Tn258262"}, "edge2273": {"@source": "Tn258313", "@target": "Tn258253"}}, "Tn258314": {"edge2277": {"@source": "Tn258314", "@target": "Tn258288"}, "edge2279": {"@source": "Tn258314", "@target": "Tn258249"}}, "Tn258318": {"edge2237": {"@source": "Tn258318", "@target": "Tn258268"}, "edge2255": {"@source": "Tn258318", "@target": "Tn258289"}}, "Tn258322": {"edge2261": {"@source": "Tn258322", "@target": "Tn258264"}, "edge2263": {"@source": "Tn258322", "@target": "Tn258276"}}, "Tn258323": {"edge2393": {"@source": "Tn258323", "@target": "Tn258273"}, "edge2395": {"@source": "Tn258323", "@target": "Tn258310"}}, "Tn258327": {"edge2287": {"@source": "Tn258327", "@target": "Tn258261"}, "edge2293": {"@source": "Tn258327", "@target": "Tn258329"}}, "Tn258328": {"edge2383": {"@source": "Tn258328", "@target": "Tn258333"}, "edge2385": {"@source": "Tn258328", "@target": "Tn258337"}}, "Tn258329": {"edge2295": {"@source": "Tn258329", "@target": "Tn258303"}, "edge2297": {"@source": "Tn258329", "@target": "Tn258302"}}, "Tn258334": {"edge2245": {"@source": "Tn258334", "@target": "Tn258285"}, "edge2247": {"@source": "Tn258334", "@target": "Tn258251"}}, "Tn258336": {"edge2413": {"@source": "Tn258336", "@target": "Tn258311"}, "edge2415": {"@source": "Tn258336", "@target": "Tn258283"}}, "Tn258337": {"edge2387": {"@source": "Tn258337", "@target": "Tn258325"}, "edge2389": {"@source": "Tn258337", "@target": "Tn258296"}}, "Tn258338": {"edge2373": {"@source": "Tn258338", "@target": "Tn258291"}, "edge2375": {"@source": "Tn258338", "@target": "Tn258270"}}, "Tn258339": {"edge2347": {"@source": "Tn258339", "@target": "Tn258300"}, "edge2349": {"@source": "Tn258339", "@target": "Tn258265"}}, "Tn258340": {"edge2409": {"@source": "Tn258340", "@target": "Tn258321"}, "edge2411": {"@source": "Tn258340", "@target": "Tn258336"}}}, "nodeById": {"Tn258247": {}, "Tn258248": {}, "Tn258249": {}, "Tn258250": {"@otu": "Tl119984"}, "Tn258251": {"@otu": "Tl120014"}, "Tn258252": {}, "Tn258253": {}, "Tn258254": {"@otu": "Tl119980"}, "Tn258255": {}, "Tn258256": {"@otu": "Tl120012"}, "Tn258257": {"@otu": "Tl120015"}, "Tn258258": {}, "Tn258259": {"@otu": "Tl55133"}, "Tn258260": {}, "Tn258261": {}, "Tn258262": {"@otu": "Tl119985"}, "Tn258263": {}, "Tn258264": {"@otu": "Tl119973"}, "Tn258265": {"@otu": "Tl119991"}, "Tn258266": {"@otu": "Tl119974"}, "Tn258267": {}, "Tn258268": {}, "Tn258269": {"@otu": "Tl119992"}, "Tn258270": {}, "Tn258271": {}, "Tn258272": {"@root": true}, "Tn258273": {"@otu": "Tl119965"}, "Tn258274": {}, "Tn258275": {"@otu": "Tl119996"}, "Tn258276": {}, "Tn258277": {"@otu": "Tl119988"}, "Tn258278": {}, "Tn258279": {}, "Tn258280": {}, "Tn258281": {"@otu": "Tl120009"}, "Tn258282": {}, "Tn258283": {"@otu": "Tl120022"}, "Tn258284": {"@otu": "Tl120000"}, "Tn258285": {"@otu": "Tl119961"}, "Tn258286": {"@otu": "Tl120020"}, "Tn258287": {}, "Tn258288": {"@otu": "Tl119959"}, "Tn258289": {}, "Tn258290": {"@otu": "Tl55130"}, "Tn258291": {"@otu": "Tl119966"}, "Tn258292": {}, "Tn258293": {}, "Tn258294": {}, "Tn258295": {"@otu": "Tl119986"}, "Tn258296": {"@otu": "Tl119968"}, "Tn258297": {"@otu": "Tl119981"}, "Tn258298": {}, "Tn258299": {}, "Tn258300": {"@otu": "Tl120008"}, "Tn258301": {"@otu": "Tl119987"}, "Tn258302": {}, "Tn258303": {"@otu": "Tl120024"}, "Tn258304": {"@otu": "Tl119982"}, "Tn258305": {"@otu": "Tl119962"}, "Tn258306": {"@otu": "Tl120006"}, "Tn258307": {"@otu": "Tl119978"}, "Tn258308": {"@otu": "Tl120010"}, "Tn258309": {}, "Tn258310": {}, "Tn258311": {"@otu": "Tl119960"}, "Tn258312": {}, "Tn258313": {}, "Tn258314": {}, "Tn258315": {"@otu": "Tl119995"}, "Tn258316": {"@otu": "Tl55123", "^ot:isTaxonExemplar": true}, "Tn258317": {"@otu": "Tl120003"}, "Tn258318": {}, "Tn258319": {"@otu": "Tl55132", "^ot:isTaxonExemplar": false}, "Tn258320": {"@otu": "Tl120018"}, "Tn258321": {"@otu": "Tl119998"}, "Tn258322": {}, "Tn258323": {}, "Tn258324": {"@otu": "Tl119979"}, "Tn258325": {"@otu": "Tl120005"}, "Tn258326": {"@otu": "Tl119969"}, "Tn258327": {}, "Tn258328": {}, "Tn258329": {}, "Tn258330": {"@otu": "Tl120004"}, "Tn258331": {"@otu": "Tl120007"}, "Tn258332": {"@otu": "Tl119972"}, "Tn258333": {"@otu": "Tl119975"}, "Tn258334": {}, "Tn258335": {"@otu": "Tl55126"}, "Tn258336": {}, "Tn258337": {}, "Tn258338": {}, "Tn258339": {}, "Tn258340": {}}}}}}}}, "branch2sha": {"master": "19ec8a2da4b35c55075f155f9fb4d01281774fe5"}, "commentHTML": "", "duplicateStudyIDs": ["pg_2273"], "shardName": "phylesystem-1", "versionHistory": [{"id": "02c52c24d1c18ebe15d3f9f387a703a1b447ecf1", "author_name": "Jonathan A Rees", "author_email": "jar398@mumble.net", "date": "Sat, 1 Oct 2016 19:42:45 -0400", "date_ISO_8601": "2016-10-01 19:42:45 -0400", "relative_date": "10 years ago", "message_subject": "change 10.xxx to http://dx.doi.org/10.xxx"}, {"id": "e91036752263057888eb7711e1a841e88c0ce788", "author_name": "Dail Laughinghouse", "author_email": "laughinghouseh@gmail.com", "date": "Thu, 31 Jul 2014 19:14:22 +0000", "date_ISO_8601": "2014-07-31 19:14:22 +0000", "relative_date": "12 years ago", "message_subject": "Update Study #ot_26 via OpenTree API"}, {"id": "5ca95c2887a91407071b94d6adc685a1170715c5", "author_name": "Dail Laughinghouse", "author_email": "laughinghouseh@gmail.com", "date": "Tue, 24 Jun 2014 02:44:30 +0100", "date_ISO_8601": "2014-06-24 02:44:30 +0100", "relative_date": "12 years ago", "message_subject": "Update Study #ot_26 via OpenTree API"}, {"id": "6d149ca9ed300a70638b7b5dcafe90b57b9be259", "author_name": "Dail Laughinghouse", "author_email": "laughinghouseh@gmail.com", "date": "Tue, 24 Jun 2014 02:41:56 +0100", "date_ISO_8601": "2014-06-24 02:41:56 +0100", "relative_date": "12 years ago", "message_subject": "Update Study #ot_26 via OpenTree API"}, {"id": "83de7b6120282d355794931dfec521fd509e62cc", "author_name": "Dail Laughinghouse", "author_email": "laughinghouseh@gmail.com", "date": "Tue, 24 Jun 2014 02:38:07 +0100", "date_ISO_8601": "2014-06-24 02:38:07 +0100", "relative_date": "12 years ago", "message_subject": "Update Study #ot_26 via OpenTree API"}]}