{"sha": "c33806c9ee11db205ee8c02a42e31b1c3128e299", "data": {"nexml": {"@about": "#study", "@generator": "Open Tree API", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xhtml": "http://www.w3.org/1999/xhtml/vocab#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "Open Tree NexSON validation", "@id": "peyotl-validator", "@name": "api.opentreeoflife.org/validate", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": [], "otherProperty": [{"name": "pythonVersion", "value": "3.10.12"}, {"name": "pythonImplementation", "value": "CPython"}]}}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0"}]}, "^ot:annotationEvents": {"annotation": [{"@dateCreated": "2025-04-16T11:07:16.766Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"autoAcceptExactMatches": false, "searchContext": {"$": "Birds"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}]}, "useFuzzyMatching": false}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2025-04-16T11:07:16.766Z", "@description": "Describes external namesets merged into this study", "@id": "merged-namesets-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "MERGED_NAMESET_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"namesets": {"nameset": []}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2025-04-16T11:07:16.766Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": [{"@filename": "PASTED.nex", "@size": 4174, "@type": "nexus", "@url": "/curator/download/supporting_files.doc.acc67d8fca385c42.5041535445442e6e6578.nex", "description": {"$": "Source data for tree(s) 'tree1'"}, "sourceForTree": [{"$": "tree1"}]}, {"@filename": "pigeons.tre", "@size": 2681, "@type": "newick", "@url": "/curator/download/supporting_files.doc.99cecb3d70d393bf.706967656f6e732e747265.tre", "description": {"$": "Source data for tree(s) 'tree2'"}, "sourceForTree": [{"$": "tree2"}]}, {"@filename": "toupload.tre", "@size": 3396, "@type": "newick", "@url": "/curator/download/supporting_files.doc.92945564a8fb1fb3.746f75706c6f61642e747265.tre", "description": {"$": "Source data for tree(s) 'tree3'"}, "sourceForTree": [{"$": "tree3"}]}, {"@filename": "toupload2.tre", "@size": 3385, "@type": "newick", "@url": "/curator/download/supporting_files.doc.a86d6e3b568daeb8.746f75706c6f6164322e747265.tre", "description": {"$": "Source data for tree(s) 'tree4'"}, "sourceForTree": [{"$": "tree4"}]}]}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node420", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node420"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node421", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node421"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node422", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node422"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node423", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node423"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node424", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node424"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node425", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node425"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node426", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node426"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node427", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node427"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node428", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node428"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node429", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node429"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node431", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node431"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node438", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node438"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node439", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node439"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node440", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node440"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node441", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node441"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node442", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node442"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node443", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node443"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node447", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node447"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node448", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node448"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node454", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node454"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node455", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node455"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node456", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node456"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node461", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node461"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node462", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node462"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node463", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node463"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node466", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node466"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node470", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node470"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node471", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node471"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node472", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node472"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node473", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node473"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node474", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node474"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node479", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node479"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node484", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node484"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node485", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node485"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node488", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node488"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node491", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node491"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node492", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node492"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node493", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node493"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node494", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node494"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node495", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node495"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node496", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node496"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node497", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node497"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node498", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node498"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node499", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node499"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node500", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node500"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node501", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node501"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node502", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node502"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node507", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node507"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node510", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node510"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node511", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node511"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node515", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node515"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node516", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node516"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node521", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node521"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node525", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node525"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node526", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node526"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node527", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node527"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node528", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node528"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node529", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node529"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node533", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node533"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node538", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node538"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node539", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node539"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node540", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node540"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node541", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node541"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node542", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node542"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node547", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node547"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node550", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node550"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node553", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node553"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node554", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node554"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node558", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node558"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node561", "@treesID": "trees1", "@treeID": "tree4", "@nodeID": "node561"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["highestMintedElementIDs"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:ottId"], "refersTo": {"@top": "otus", "@idref": ["otu1", "otu10", "otu11", "otu12", "otu13", "otu15", "otu16", "otu17", "otu18", "otu19", "otu2", "otu20", "otu21", "otu23", "otu24", "otu25", "otu26", "otu27", "otu28", "otu29", "otu3", "otu30", "otu31", "otu32", "otu33", "otu35", "otu36", "otu37", "otu38", "otu39", "otu41", "otu42", "otu43", "otu44", "otu45", "otu46", "otu47", "otu48", "otu49", "otu50", "otu51", "otu52", "otu53", "otu54", "otu55", "otu56", "otu57", "otu58", "otu59", "otu6", "otu60", "otu61", "otu62", "otu63", "otu64", "otu65", "otu66", "otu67", "otu68", "otu69", "otu7", "otu8", "otu9"], "@otusID": "otus1", "@otuID": ["otu1", "otu10", "otu11", "otu12", "otu13", "otu15", "otu16", "otu17", "otu18", "otu19", "otu2", "otu20", "otu21", "otu23", "otu24", "otu25", "otu26", "otu27", "otu28", "otu29", "otu3", "otu30", "otu31", "otu32", "otu33", "otu35", "otu36", "otu37", "otu38", "otu39", "otu41", "otu42", "otu43", "otu44", "otu45", "otu46", "otu47", "otu48", "otu49", "otu50", "otu51", "otu52", "otu53", "otu54", "otu55", "otu56", "otu57", "otu58", "otu59", "otu6", "otu60", "otu61", "otu62", "otu63", "otu64", "otu65", "otu66", "otu67", "otu68", "otu69", "otu7", "otu8", "otu9"]}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu137", "otu138"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:branchLengthTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree4", "@treesID": "trees1", "@treeID": "tree4"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit", "^ot:reasonsToExcludeFromSynthesis"], "refersTo": {"@top": "trees", "@idref": "tree4", "@treesID": "trees1", "@treeID": "tree4"}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": [], "^ot:comment": "", "^ot:curatorName": ["eliotmiller"], "^ot:dataDeposit": {"@href": ""}, "^ot:focalClade": 938413, "^ot:focalCladeOTTTaxonName": "Columbidae", "^ot:otusElementOrder": ["otus1"], "^ot:studyId": "ot_2762", "^ot:studyPublication": {"@href": "https://doi.org/10.1098/rsbl.2024.0464"}, "^ot:studyPublicationReference": "Oswald, J. A., Boyd, B. M., Szewczak, A. R., LeFebvre, M. J., Stucky, B. J., Guralnick, R. P., Johnson, K. P., Allen, J. M., & Steadman, D. W. (2025). Genomic data reveal that the Cuban blue-headed quail-dove (\n            Starnoenas cyanocephala\n            ) is a biogeographic relict. Biology Letters, 21(1). https://doi.org/10.1098/rsbl.2024.0464\n", "^ot:studyYear": 2025, "^ot:tag": [], "^ot:treesElementOrder": ["trees1"], "highestMintedElementIDs": {"agent": 0, "annotation": 0, "edge": 559, "message": 0, "node": 563, "otu": 284, "otus": 5, "tree": 4, "trees": 5}, "otusById": {"otus1": {"otuById": {"otu1": {"^ot:originalLabel": "Stori"}, "otu10": {"^ot:originalLabel": "Cogui"}, "otu100": {"^ot:originalLabel": "UF8407 Starnoenas cyanocephala", "^ot:ottId": 3596672, "^ot:ottTaxonName": "Starnoenas cyanocephala"}, "otu101": {"^ot:originalLabel": "Columbina picui", "^ot:ottId": 54405, "^ot:ottTaxonName": "Columbina picui"}, "otu102": {"^ot:originalLabel": "Columbina cruziana", "^ot:ottId": 1032048, "^ot:ottTaxonName": "Columbina cruziana"}, "otu104": {"^ot:originalLabel": "Metriopelia ceciliae", "^ot:ottId": 143598, "^ot:ottTaxonName": "Metriopelia ceciliae"}, "otu105": {"^ot:originalLabel": "Turtur brehmeri", "^ot:ottId": 527660, "^ot:ottTaxonName": "Turtur brehmeri"}, "otu106": {"^ot:originalLabel": "Turtur tympanistria", "^ot:ottId": 150851, "^ot:ottTaxonName": "Turtur tympanistria"}, "otu107": {"^ot:originalLabel": "Turtur chalcospilos", "^ot:ottId": 1077424, "^ot:ottTaxonName": "Turtur chalcospilos"}, "otu108": {"^ot:originalLabel": "UF46091 Oena capensis", "^ot:ottId": 975892, "^ot:ottTaxonName": "Oena capensis"}, "otu109": {"^ot:originalLabel": "Chalcophaps stephani", "^ot:ottId": 1077422, "^ot:ottTaxonName": "Chalcophaps stephani"}, "otu11": {"^ot:originalLabel": "Copal"}, "otu110": {"^ot:originalLabel": "Chalcophaps indica", "^ot:ottId": 1032049, "^ot:ottTaxonName": "Chalcophaps indica"}, "otu111": {"^ot:originalLabel": "Treron waalia", "^ot:ottId": 931105, "^ot:ottTaxonName": "Treron waalia"}, "otu112": {"^ot:originalLabel": "Treron vernans", "^ot:ottId": 329083, "^ot:ottTaxonName": "Treron vernans"}, "otu113": {"^ot:originalLabel": "Ducula rufigaster", "^ot:ottId": 380070, "^ot:ottTaxonName": "Ducula rufigaster"}, "otu114": {"^ot:originalLabel": "Ducula pacifica", "^ot:ottId": 470998, "^ot:ottTaxonName": "Ducula pacifica"}, "otu115": {"^ot:originalLabel": "Ducula bicolor", "^ot:ottId": 449659, "^ot:ottTaxonName": "Ducula bicolor"}, "otu116": {"^ot:originalLabel": "UF42971 Gymnophaps albertisii", "^ot:ottId": 437673, "^ot:ottTaxonName": "Gymnophaps albertisii"}, "otu117": {"^ot:originalLabel": "Lopholaimus antarcticus", "^ot:ottId": 956247, "^ot:ottTaxonName": "Lopholaimus antarcticus"}, "otu118": {"^ot:originalLabel": "Ptilinopus rivoli", "^ot:ottId": 414989, "^ot:ottTaxonName": "Ptilinopus rivoli"}, "otu119": {"^ot:originalLabel": "UF46675 Goura victoria", "^ot:ottId": 392933, "^ot:ottTaxonName": "Goura victoria"}, "otu12": {"^ot:originalLabel": "Coleu"}, "otu120": {"^ot:originalLabel": "OUT 0007 Caloenas nicobarica", "^ot:ottId": 1032058, "^ot:ottTaxonName": "Caloenas nicobarica"}, "otu121": {"^ot:originalLabel": "UF46663 Trugon terrestris", "^ot:ottId": 956253, "^ot:ottTaxonName": "Trugon terrestris"}, "otu122": {"^ot:originalLabel": "Otidiphaps nobilis", "^ot:ottId": 543760, "^ot:ottTaxonName": "Otidiphaps nobilis"}, "otu123": {"^ot:originalLabel": "Phapitreron leucotis", "^ot:ottId": 244138, "^ot:ottTaxonName": "Phapitreron leucotis"}, "otu124": {"^ot:originalLabel": "Geophaps smithii", "^ot:ottId": 3596658, "^ot:ottTaxonName": "Geophaps smithii"}, "otu125": {"^ot:originalLabel": "Geophaps scripta", "^ot:ottId": 3596659, "^ot:ottTaxonName": "Geophaps scripta"}, "otu126": {"^ot:originalLabel": "Geophaps plumifera", "^ot:ottId": 147369, "^ot:ottTaxonName": "Geophaps plumifera"}, "otu127": {"^ot:originalLabel": "Ocyphaps lophotes", "^ot:ottId": 392967, "^ot:ottTaxonName": "Ocyphaps lophotes"}, "otu129": {"^ot:originalLabel": "Petrophassa rufipennis", "^ot:ottId": 3596664, "^ot:ottTaxonName": "Petrophassa rufipennis"}, "otu13": {"^ot:originalLabel": "Papic"}, "otu130": {"^ot:originalLabel": "Geopelia placida", "^ot:ottId": 3596612, "^ot:ottTaxonName": "Geopelia placida"}, "otu131": {"^ot:originalLabel": "Geopelia cuneata", "^ot:ottId": 449654, "^ot:ottTaxonName": "Geopelia cuneata"}, "otu132": {"^ot:originalLabel": "Geopelia humeralis", "^ot:ottId": 3596611, "^ot:ottTaxonName": "Geopelia humeralis"}, "otu133": {"^ot:originalLabel": "Phaps elegans", "^ot:ottId": 3596603, "^ot:ottTaxonName": "Phaps elegans"}, "otu134": {"^ot:originalLabel": "Phaps chalcoptera", "^ot:ottId": 28965, "^ot:ottTaxonName": "Phaps chalcoptera"}, "otu135": {"^ot:originalLabel": "Phaps histrionica", "^ot:ottId": 3596604, "^ot:ottTaxonName": "Phaps histrionica"}, "otu136": {"^ot:originalLabel": "Leucosarcia melanoleuca", "^ot:ottId": 358714, "^ot:ottTaxonName": "Leucosarcia melanoleuca"}, "otu137": {"^ot:originalLabel": "USNM615012 Alopecoenas beccarii", "^ot:ottId": 550862, "^ot:ottTaxonName": "Alopecoenas beccarii"}, "otu138": {"^ot:originalLabel": "Gallicolumba beccarii", "^ot:ottId": 550862, "^ot:ottTaxonName": "Alopecoenas beccarii"}, "otu14": {"^ot:originalLabel": "Pamac", "^ot:ottId": 773522, "^ot:ottTaxonName": "Patagioenas maculosa"}, "otu15": {"^ot:originalLabel": "Paoen"}, "otu16": {"^ot:originalLabel": "Paspe"}, "otu17": {"^ot:originalLabel": "Pafas"}, "otu173": {"^ot:originalLabel": "Ficedula albicollis", "^ot:ottId": 107840, "^ot:ottTaxonName": "Ficedula albicollis"}, "otu174": {"^ot:originalLabel": "Taeniopygia guttata", "^ot:ottId": 708327, "^ot:ottTaxonName": "Taeniopygia guttata"}, "otu175": {"^ot:originalLabel": "Anas platyrhynchus", "^ot:ottId": 765167, "^ot:ottTaxonName": "Anas platyrhynchos"}, "otu176": {"^ot:originalLabel": "Meleagris gallopavo", "^ot:ottId": 446482, "^ot:ottTaxonName": "Meleagris gallopavo"}, "otu18": {"^ot:originalLabel": "Ecmig"}, "otu19": {"^ot:originalLabel": "Maamb"}, "otu2": {"^ot:originalLabel": "Stlug"}, "otu20": {"^ot:originalLabel": "Maruf"}, "otu21": {"^ot:originalLabel": "Mamac"}, "otu22": {"^ot:originalLabel": "Manig", "^ot:ottId": 414979, "^ot:ottTaxonName": "Macropygia nigrirostris"}, "otu23": {"^ot:originalLabel": "Rerei"}, "otu24": {"^ot:originalLabel": "Zemel"}, "otu25": {"^ot:originalLabel": "Zeasi"}, "otu26": {"^ot:originalLabel": "Zemac"}, "otu27": {"^ot:originalLabel": "Gefre"}, "otu28": {"^ot:originalLabel": "Lejam"}, "otu29": {"^ot:originalLabel": "Leruf"}, "otu3": {"^ot:originalLabel": "Stcap"}, "otu30": {"^ot:originalLabel": "Gemon"}, "otu31": {"^ot:originalLabel": "Stcya"}, "otu32": {"^ot:originalLabel": "Copic"}, "otu33": {"^ot:originalLabel": "Cocru"}, "otu34": {"^ot:originalLabel": "Meyam", "^ot:ottId": 414980, "^ot:ottTaxonName": "Metriopelia aymara"}, "otu35": {"^ot:originalLabel": "Mecec"}, "otu36": {"^ot:originalLabel": "Gesmi"}, "otu37": {"^ot:originalLabel": "Gescr"}, "otu38": {"^ot:originalLabel": "Geplum"}, "otu39": {"^ot:originalLabel": "Oclop"}, "otu4": {"^ot:originalLabel": "StdecDecato", "^ot:ottId": 277818, "^ot:ottTaxonName": "Streptopelia decaocto"}, "otu40": {"^ot:originalLabel": "Pealb", "^ot:ottId": 956245, "^ot:ottTaxonName": "Petrophassa albipennis"}, "otu41": {"^ot:originalLabel": "Peruf"}, "otu42": {"^ot:originalLabel": "Geplac"}, "otu43": {"^ot:originalLabel": "Gecun"}, "otu44": {"^ot:originalLabel": "Gehum"}, "otu45": {"^ot:originalLabel": "Phele"}, "otu46": {"^ot:originalLabel": "Phcha"}, "otu47": {"^ot:originalLabel": "Phhis"}, "otu48": {"^ot:originalLabel": "Lemel"}, "otu49": {"^ot:originalLabel": "Albec"}, "otu5": {"^ot:originalLabel": "StdecDecipiens", "^ot:ottId": 277810, "^ot:ottTaxonName": "Streptopelia decipiens"}, "otu50": {"^ot:originalLabel": "Gabec"}, "otu51": {"^ot:originalLabel": "Phleu"}, "otu52": {"^ot:originalLabel": "Duruf"}, "otu53": {"^ot:originalLabel": "Dupac"}, "otu54": {"^ot:originalLabel": "Dubic"}, "otu55": {"^ot:originalLabel": "Gyalb"}, "otu56": {"^ot:originalLabel": "Loant"}, "otu57": {"^ot:originalLabel": "Ptriv"}, "otu58": {"^ot:originalLabel": "Govic"}, "otu59": {"^ot:originalLabel": "Canic"}, "otu6": {"^ot:originalLabel": "Stsem"}, "otu60": {"^ot:originalLabel": "Trter"}, "otu61": {"^ot:originalLabel": "Otnob"}, "otu62": {"^ot:originalLabel": "Tubre"}, "otu63": {"^ot:originalLabel": "Tutym"}, "otu64": {"^ot:originalLabel": "Tucha"}, "otu65": {"^ot:originalLabel": "Oecap"}, "otu66": {"^ot:originalLabel": "Chste"}, "otu67": {"^ot:originalLabel": "Chind"}, "otu68": {"^ot:originalLabel": "Trwaa"}, "otu69": {"^ot:originalLabel": "Trver"}, "otu7": {"^ot:originalLabel": "Aplar"}, "otu70": {"^ot:originalLabel": "Macropygia amboinensis", "^ot:ottId": 956246, "^ot:ottTaxonName": "Macropygia amboinensis"}, "otu71": {"^ot:originalLabel": "Macropygia ruficeps", "^ot:ottId": 3596629, "^ot:ottTaxonName": "Macropygia ruficeps"}, "otu72": {"^ot:originalLabel": "Macropygia mackinlayi", "^ot:ottId": 277822, "^ot:ottTaxonName": "Macropygia mackinlayi"}, "otu74": {"^ot:originalLabel": "Reinwardtoena reinwardtii", "^ot:ottId": 3596474, "^ot:ottTaxonName": "Reinwardtoena reinwardtii"}, "otu75": {"^ot:originalLabel": "Patagioenas picazuro", "^ot:ottId": 773505, "^ot:ottTaxonName": "Patagioenas picazuro"}, "otu77": {"^ot:originalLabel": "Patagioenas oenops", "^ot:ottId": 96875, "^ot:ottTaxonName": "Patagioenas oenops"}, "otu78": {"^ot:originalLabel": "Patagioenas speciosa", "^ot:ottId": 773509, "^ot:ottTaxonName": "Patagioenas speciosa"}, "otu79": {"^ot:originalLabel": "Patagioenas fasciata", "^ot:ottId": 148378, "^ot:ottTaxonName": "Patagioenas fasciata"}, "otu8": {"^ot:originalLabel": "Stpic"}, "otu80": {"^ot:originalLabel": "AMNH753720 Ectopistes migratorius", "^ot:ottId": 506098, "^ot:ottTaxonName": "Ectopistes migratorius"}, "otu81": {"^ot:originalLabel": "Columba livia", "^ot:ottId": 938416, "^ot:ottTaxonName": "Columba livia"}, "otu82": {"^ot:originalLabel": "Columba guinea", "^ot:ottId": 767317, "^ot:ottTaxonName": "Columba guinea"}, "otu83": {"^ot:originalLabel": "Columba palumbus", "^ot:ottId": 938408, "^ot:ottTaxonName": "Columba palumbus"}, "otu84": {"^ot:originalLabel": "Columba leucomela", "^ot:ottId": 3596508, "^ot:ottTaxonName": "Columba leucomela"}, "otu85": {"^ot:originalLabel": "Streptopelia picturata", "^ot:ottId": 801227, "^ot:ottTaxonName": "Streptopelia picturata"}, "otu86": {"^ot:originalLabel": "Aplopelia larvata", "^ot:ottId": 3596487, "^ot:ottTaxonName": "Aplopelia larvata"}, "otu87": {"^ot:originalLabel": "Streptopelia orientalis", "^ot:ottId": 549523, "^ot:ottTaxonName": "Streptopelia orientalis"}, "otu88": {"^ot:originalLabel": "Streptopelia lugens", "^ot:ottId": 3596480, "^ot:ottTaxonName": "Streptopelia lugens"}, "otu89": {"^ot:originalLabel": "Streptopelia capicola", "^ot:ottId": 244134, "^ot:ottTaxonName": "Streptopelia capicola"}, "otu9": {"^ot:originalLabel": "Coliv"}, "otu92": {"^ot:originalLabel": "Streptopelia semitorquata", "^ot:ottId": 801232, "^ot:ottTaxonName": "Streptopelia semitorquata"}, "otu93": {"^ot:originalLabel": "Zenaida meloda", "^ot:ottId": 853670, "^ot:ottTaxonName": "Zenaida meloda"}, "otu94": {"^ot:originalLabel": "Zenaida asiatica", "^ot:ottId": 715580, "^ot:ottTaxonName": "Zenaida asiatica"}, "otu95": {"^ot:originalLabel": "Zenaida macroura", "^ot:ottId": 183576, "^ot:ottTaxonName": "Zenaida macroura"}, "otu96": {"^ot:originalLabel": "Geotrygon frenata", "^ot:ottId": 414983, "^ot:ottTaxonName": "Zentrygon frenata"}, "otu97": {"^ot:originalLabel": "Leptotila jamaicensis", "^ot:ottId": 767308, "^ot:ottTaxonName": "Leptotila jamaicensis"}, "otu98": {"^ot:originalLabel": "Leptotila rufaxilla", "^ot:ottId": 534763, "^ot:ottTaxonName": "Leptotila rufaxilla"}, "otu99": {"^ot:originalLabel": "Geotrygon montana", "^ot:ottId": 664480, "^ot:ottTaxonName": "Geotrygon montana"}}}}, "treesById": {"trees1": {"@otus": "otus1", "^ot:treeElementOrder": ["tree4"], "treeById": {"tree4": {"@label": "Astral tree (rooted)", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:changesCount", "^ot:curatedType": "", "^ot:inGroupClade": "node421", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:reasonsToExcludeFromSynthesis": [], "^ot:rootNodeId": "node420", "^ot:specifiedRoot": "node420", "^ot:tag": [], "^ot:unrootedTree": false, "edgeBySourceId": {"node420": {"edge417": {"@length": 0.048951, "@source": "node420", "@target": "node421"}, "edge554": {"@length": 0.053171, "@source": "node420", "@target": "node558"}, "edge557": {"@length": 0.025543, "@source": "node420", "@target": "node561"}}, "node421": {"edge418": {"@length": 0.000847, "@source": "node421", "@target": "node422"}, "edge487": {"@length": 0.00118, "@source": "node421", "@target": "node491"}}, "node422": {"edge419": {"@length": 0.003771, "@source": "node422", "@target": "node423"}, "edge480": {"@length": 0.01174, "@source": "node422", "@target": "node484"}}, "node423": {"edge420": {"@length": 0.000171, "@source": "node423", "@target": "node424"}, "edge479": {"@length": 0.013611, "@source": "node423", "@target": "node483"}}, "node424": {"edge421": {"@length": 0.004598, "@source": "node424", "@target": "node425"}, "edge466": {"@length": 0.002946, "@source": "node424", "@target": "node470"}}, "node425": {"edge422": {"@length": 0.000977, "@source": "node425", "@target": "node426"}, "edge457": {"@length": 0.004706, "@source": "node425", "@target": "node461"}}, "node426": {"edge423": {"@length": 0.003044, "@source": "node426", "@target": "node427"}, "edge434": {"@length": 0.00019, "@source": "node426", "@target": "node438"}}, "node427": {"edge424": {"@length": 0.002908, "@source": "node427", "@target": "node428"}, "edge433": {"@length": 0.009017, "@source": "node427", "@target": "node437"}}, "node428": {"edge425": {"@length": 5.5e-05, "@source": "node428", "@target": "node429"}, "edge432": {"@length": 0.004742, "@source": "node428", "@target": "node436"}}, "node429": {"edge426": {"@length": 0.001316, "@source": "node429", "@target": "node430"}, "edge431": {"@length": 0.006382, "@source": "node429", "@target": "node435"}}, "node430": {"edge427": {"@length": 0.000191, "@source": "node430", "@target": "node431"}, "edge430": {"@length": 0.003088, "@source": "node430", "@target": "node434"}}, "node431": {"edge428": {"@length": 0.001129, "@source": "node431", "@target": "node432"}, "edge429": {"@length": 0.00206, "@source": "node431", "@target": "node433"}}, "node438": {"edge435": {"@length": 0.001064, "@source": "node438", "@target": "node439"}, "edge450": {"@length": 0.000989, "@source": "node438", "@target": "node454"}}, "node439": {"edge436": {"@length": 0.000209, "@source": "node439", "@target": "node440"}, "edge449": {"@length": 0.006239, "@source": "node439", "@target": "node453"}}, "node440": {"edge437": {"@length": 0.001897, "@source": "node440", "@target": "node441"}, "edge448": {"@length": 0.005085, "@source": "node440", "@target": "node452"}}, "node441": {"edge438": {"@length": 0.001097, "@source": "node441", "@target": "node442"}, "edge443": {"@length": 0.000213, "@source": "node441", "@target": "node447"}}, "node442": {"edge439": {"@length": 0.001096, "@source": "node442", "@target": "node443"}, "edge442": {"@length": 0.000852, "@source": "node442", "@target": "node446"}}, "node443": {"edge440": {"@length": 0.000638, "@source": "node443", "@target": "node444"}, "edge441": {"@length": 0.001193, "@source": "node443", "@target": "node445"}}, "node447": {"edge444": {"@length": 0.001525, "@source": "node447", "@target": "node448"}, "edge447": {"@length": 0.001456, "@source": "node447", "@target": "node451"}}, "node448": {"edge445": {"@length": 0.00043, "@source": "node448", "@target": "node449"}, "edge446": {"@length": 0.000113, "@source": "node448", "@target": "node450"}}, "node454": {"edge451": {"@length": 0.003749, "@source": "node454", "@target": "node455"}, "edge456": {"@length": 0.004012, "@source": "node454", "@target": "node460"}}, "node455": {"edge452": {"@length": 0.000378, "@source": "node455", "@target": "node456"}, "edge455": {"@length": 0.007856, "@source": "node455", "@target": "node459"}}, "node456": {"edge453": {"@length": 0.004303, "@source": "node456", "@target": "node457"}, "edge454": {"@length": 0.002635, "@source": "node456", "@target": "node458"}}, "node461": {"edge458": {"@length": 0.001249, "@source": "node461", "@target": "node462"}, "edge465": {"@length": 0.003631, "@source": "node461", "@target": "node469"}}, "node462": {"edge459": {"@length": 0.001999, "@source": "node462", "@target": "node463"}, "edge462": {"@length": 0.001633, "@source": "node462", "@target": "node466"}}, "node463": {"edge460": {"@length": 8.1e-05, "@source": "node463", "@target": "node464"}, "edge461": {"@length": 0.000667, "@source": "node463", "@target": "node465"}}, "node466": {"edge463": {"@length": 0.001692, "@source": "node466", "@target": "node467"}, "edge464": {"@length": 0.00195, "@source": "node466", "@target": "node468"}}, "node470": {"edge467": {"@length": 0.000565, "@source": "node470", "@target": "node471"}, "edge478": {"@length": 0.010605, "@source": "node470", "@target": "node482"}}, "node471": {"edge468": {"@length": 0.001532, "@source": "node471", "@target": "node472"}, "edge475": {"@length": 0.004278, "@source": "node471", "@target": "node479"}}, "node472": {"edge469": {"@length": 0.00197, "@source": "node472", "@target": "node473"}, "edge474": {"@length": 0.007884, "@source": "node472", "@target": "node478"}}, "node473": {"edge470": {"@length": 0.003119, "@source": "node473", "@target": "node474"}, "edge473": {"@length": 0.005636, "@source": "node473", "@target": "node477"}}, "node474": {"edge471": {"@length": 0.000498, "@source": "node474", "@target": "node475"}, "edge472": {"@length": 0.00178, "@source": "node474", "@target": "node476"}}, "node479": {"edge476": {"@length": 0.003812, "@source": "node479", "@target": "node480"}, "edge477": {"@length": 0.003692, "@source": "node479", "@target": "node481"}}, "node484": {"edge481": {"@length": 0.0025, "@source": "node484", "@target": "node485"}, "edge484": {"@length": 0.004476, "@source": "node484", "@target": "node488"}}, "node485": {"edge482": {"@length": 0.005711, "@source": "node485", "@target": "node486"}, "edge483": {"@length": 0.006297, "@source": "node485", "@target": "node487"}}, "node488": {"edge485": {"@length": 0.000602, "@source": "node488", "@target": "node489"}, "edge486": {"@length": 0.001497, "@source": "node488", "@target": "node490"}}, "node491": {"edge488": {"@length": 0.000436, "@source": "node491", "@target": "node492"}, "edge549": {"@length": 0.000776, "@source": "node491", "@target": "node553"}}, "node492": {"edge489": {"@length": 0.000409, "@source": "node492", "@target": "node493"}, "edge534": {"@length": 0.000699, "@source": "node492", "@target": "node538"}}, "node493": {"edge490": {"@length": 0.000965, "@source": "node493", "@target": "node494"}, "edge521": {"@length": 0.000629, "@source": "node493", "@target": "node525"}}, "node494": {"edge491": {"@length": 0.000212, "@source": "node494", "@target": "node495"}, "edge520": {"@length": 0.014686, "@source": "node494", "@target": "node524"}}, "node495": {"edge492": {"@length": 0.000935, "@source": "node495", "@target": "node496"}, "edge517": {"@length": 0.007277, "@source": "node495", "@target": "node521"}}, "node496": {"edge493": {"@length": 0.000722, "@source": "node496", "@target": "node497"}, "edge516": {"@length": 0.008376, "@source": "node496", "@target": "node520"}}, "node497": {"edge494": {"@length": 0.000967, "@source": "node497", "@target": "node498"}, "edge511": {"@length": 0.000432, "@source": "node497", "@target": "node515"}}, "node498": {"edge495": {"@length": 0.000407, "@source": "node498", "@target": "node499"}, "edge506": {"@length": 0.004049, "@source": "node498", "@target": "node510"}}, "node499": {"edge496": {"@length": 0.000603, "@source": "node499", "@target": "node500"}, "edge503": {"@length": 0.002939, "@source": "node499", "@target": "node507"}}, "node500": {"edge497": {"@length": 0.002032, "@source": "node500", "@target": "node501"}, "edge502": {"@length": 0.006987, "@source": "node500", "@target": "node506"}}, "node501": {"edge498": {"@length": 0.001348, "@source": "node501", "@target": "node502"}, "edge501": {"@length": 0.005199, "@source": "node501", "@target": "node505"}}, "node502": {"edge499": {"@length": 0.002751, "@source": "node502", "@target": "node503"}, "edge500": {"@length": 0.002566, "@source": "node502", "@target": "node504"}}, "node507": {"edge504": {"@length": 0.002201, "@source": "node507", "@target": "node508"}, "edge505": {"@length": 0.001533, "@source": "node507", "@target": "node509"}}, "node510": {"edge507": {"@length": 0.001094, "@source": "node510", "@target": "node511"}, "edge510": {"@length": 0.002782, "@source": "node510", "@target": "node514"}}, "node511": {"edge508": {"@length": 0.001547, "@source": "node511", "@target": "node512"}, "edge509": {"@length": 0.003513, "@source": "node511", "@target": "node513"}}, "node515": {"edge512": {"@length": 0.000104, "@source": "node515", "@target": "node516"}, "edge515": {"@length": 0.004941, "@source": "node515", "@target": "node519"}}, "node516": {"edge513": {"@length": 0.006684, "@source": "node516", "@target": "node517"}, "edge514": {"@length": 0.003541, "@source": "node516", "@target": "node518"}}, "node521": {"edge518": {"@length": 0.001174, "@source": "node521", "@target": "node522"}, "edge519": {"@length": 0.001557, "@source": "node521", "@target": "node523"}}, "node525": {"edge522": {"@length": 0.001693, "@source": "node525", "@target": "node526"}, "edge533": {"@length": 0.009772, "@source": "node525", "@target": "node537"}}, "node526": {"edge523": {"@length": 0.000856, "@source": "node526", "@target": "node527"}, "edge532": {"@length": 0.015651, "@source": "node526", "@target": "node536"}}, "node527": {"edge524": {"@length": 0.003471, "@source": "node527", "@target": "node528"}, "edge529": {"@length": 0.006364, "@source": "node527", "@target": "node533"}}, "node528": {"edge525": {"@length": 0.000286, "@source": "node528", "@target": "node529"}, "edge528": {"@length": 0.003004, "@source": "node528", "@target": "node532"}}, "node529": {"edge526": {"@length": 0.003901, "@source": "node529", "@target": "node530"}, "edge527": {"@length": 0.003736, "@source": "node529", "@target": "node531"}}, "node533": {"edge530": {"@length": 0.00307, "@source": "node533", "@target": "node534"}, "edge531": {"@length": 0.003731, "@source": "node533", "@target": "node535"}}, "node538": {"edge535": {"@length": 0.008605, "@source": "node538", "@target": "node539"}, "edge546": {"@length": 0.011885, "@source": "node538", "@target": "node550"}}, "node539": {"edge536": {"@length": 0.001863, "@source": "node539", "@target": "node540"}, "edge543": {"@length": 0.003613, "@source": "node539", "@target": "node547"}}, "node540": {"edge537": {"@length": 0.001458, "@source": "node540", "@target": "node541"}, "edge542": {"@length": 0.006729, "@source": "node540", "@target": "node546"}}, "node541": {"edge538": {"@length": 0.000956, "@source": "node541", "@target": "node542"}, "edge541": {"@length": 0.003683, "@source": "node541", "@target": "node545"}}, "node542": {"edge539": {"@length": 0.002892, "@source": "node542", "@target": "node543"}, "edge540": {"@length": 0.002687, "@source": "node542", "@target": "node544"}}, "node547": {"edge544": {"@length": 0.002853, "@source": "node547", "@target": "node548"}, "edge545": {"@length": 0.002909, "@source": "node547", "@target": "node549"}}, "node550": {"edge547": {"@length": 0.000668, "@source": "node550", "@target": "node551"}, "edge548": {"@length": 0.001292, "@source": "node550", "@target": "node552"}}, "node553": {"edge550": {"@length": 0.001202, "@source": "node553", "@target": "node554"}, "edge553": {"@length": 0.014009, "@source": "node553", "@target": "node557"}}, "node554": {"edge551": {"@length": 0.011717, "@source": "node554", "@target": "node555"}, "edge552": {"@length": 0.008849, "@source": "node554", "@target": "node556"}}, "node558": {"edge555": {"@length": 0.030213, "@source": "node558", "@target": "node559"}, "edge556": {"@length": 0.028062, "@source": "node558", "@target": "node560"}}, "node561": {"edge558": {"@length": 0.060082, "@source": "node561", "@target": "node562"}, "edge559": {"@length": 0.09406, "@source": "node561", "@target": "node563"}}}, "nodeById": {"node420": {"@label": "1.000000", "@root": true}, "node421": {"@label": "1.000000"}, "node422": {"@label": "1.000000"}, "node423": {"@label": "1.000000"}, "node424": {"@label": "1.000000"}, "node425": {"@label": "0.971128"}, "node426": {"@label": "1.000000"}, "node427": {"@label": "1.000000"}, "node428": {"@label": "1.000000"}, "node429": {"@label": "1.000000"}, "node430": {}, "node431": {"@label": "1.000000"}, "node432": {"@otu": "otu14"}, "node433": {"@otu": "otu75"}, "node434": {"@otu": "otu77"}, "node435": {"@otu": "otu78"}, "node436": {"@otu": "otu79"}, "node437": {"@otu": "otu80"}, "node438": {"@label": "1.000000"}, "node439": {"@label": "1.000000"}, "node440": {"@label": "0.644101"}, "node441": {"@label": "1.000000"}, "node442": {"@label": "1.000000"}, "node443": {"@label": "1.000000"}, "node444": {"@otu": "otu4"}, "node445": {"@otu": "otu5"}, "node446": {"@otu": "otu92"}, "node447": {"@label": "1.000000"}, "node448": {"@label": "1.000000"}, "node449": {"@otu": "otu88"}, "node450": {"@otu": "otu87"}, "node451": {"@otu": "otu89"}, "node452": {"@otu": "otu86"}, "node453": {"@otu": "otu85"}, "node454": {"@label": "1.000000"}, "node455": {"@label": "1.000000"}, "node456": {"@label": "1.000000"}, "node457": {"@otu": "otu81"}, "node458": {"@otu": "otu82"}, "node459": {"@otu": "otu83"}, "node460": {"@otu": "otu84"}, "node461": {"@label": "1.000000"}, "node462": {"@label": "1.000000"}, "node463": {"@label": "1.000000"}, "node464": {"@otu": "otu22"}, "node465": {"@otu": "otu72"}, "node466": {"@label": "1.000000"}, "node467": {"@otu": "otu70"}, "node468": {"@otu": "otu71"}, "node469": {"@otu": "otu74"}, "node470": {"@label": "1.000000"}, "node471": {"@label": "1.000000"}, "node472": {"@label": "1.000000"}, "node473": {"@label": "1.000000"}, "node474": {"@label": "1.000000"}, "node475": {"@otu": "otu94"}, "node476": {"@otu": "otu93"}, "node477": {"@otu": "otu95"}, "node478": {"@otu": "otu96"}, "node479": {"@label": "1.000000"}, "node480": {"@otu": "otu97"}, "node481": {"@otu": "otu98"}, "node482": {"@otu": "otu99"}, "node483": {"@otu": "otu100"}, "node484": {"@label": "1.000000"}, "node485": {"@label": "1.000000"}, "node486": {"@otu": "otu34"}, "node487": {"@otu": "otu104"}, "node488": {"@label": "1.000000"}, "node489": {"@otu": "otu101"}, "node490": {"@otu": "otu102"}, "node491": {"@label": "1.000000"}, "node492": {"@label": "0.970413"}, "node493": {"@label": "0.922767"}, "node494": {"@label": "1.000000"}, "node495": {"@label": "1.000000"}, "node496": {"@label": "1.000000"}, "node497": {"@label": "1.000000"}, "node498": {"@label": "1.000000"}, "node499": {"@label": "1.000000"}, "node500": {"@label": "0.999990"}, "node501": {"@label": "1.000000"}, "node502": {"@label": "1.000000"}, "node503": {"@otu": "otu124"}, "node504": {"@otu": "otu125"}, "node505": {"@otu": "otu126"}, "node506": {"@otu": "otu127"}, "node507": {"@label": "1.000000"}, "node508": {"@otu": "otu40"}, "node509": {"@otu": "otu129"}, "node510": {"@label": "1.000000"}, "node511": {"@label": "1.000000"}, "node512": {"@otu": "otu130"}, "node513": {"@otu": "otu131"}, "node514": {"@otu": "otu132"}, "node515": {"@label": "1.000000"}, "node516": {"@label": "1.000000"}, "node517": {"@otu": "otu134"}, "node518": {"@otu": "otu133"}, "node519": {"@otu": "otu135"}, "node520": {"@otu": "otu136"}, "node521": {"@label": "1.000000"}, "node522": {"@otu": "otu137"}, "node523": {"@otu": "otu138"}, "node524": {"@otu": "otu123"}, "node525": {"@label": "0.662312"}, "node526": {"@label": "1.000000"}, "node527": {"@label": "1.000000"}, "node528": {"@label": "1.000000"}, "node529": {"@label": "1.000000"}, "node530": {"@otu": "otu114"}, "node531": {"@otu": "otu113"}, "node532": {"@otu": "otu115"}, "node533": {"@label": "1.000000"}, "node534": {"@otu": "otu116"}, "node535": {"@otu": "otu117"}, "node536": {"@otu": "otu118"}, "node537": {"@otu": "otu122"}, "node538": {"@label": "0.988704"}, "node539": {"@label": "1.000000"}, "node540": {"@label": "1.000000"}, "node541": {"@label": "1.000000"}, "node542": {"@label": "1.000000"}, "node543": {"@otu": "otu106"}, "node544": {"@otu": "otu105"}, "node545": {"@otu": "otu107"}, "node546": {"@otu": "otu108"}, "node547": {"@label": "1.000000"}, "node548": {"@otu": "otu110"}, "node549": {"@otu": "otu109"}, "node550": {"@label": "1.000000"}, "node551": {"@otu": "otu112"}, "node552": {"@otu": "otu111"}, "node553": {"@label": "1.000000"}, "node554": {"@label": "1.000000"}, "node555": {"@otu": "otu120"}, "node556": {"@otu": "otu119"}, "node557": {"@otu": "otu121"}, "node558": {"@label": "1.000000"}, "node559": {"@otu": "otu173"}, "node560": {"@otu": "otu174"}, "node561": {"@label": "1.000000"}, "node562": {"@otu": "otu175"}, "node563": {"@otu": "otu176"}}}}}}}}, "branch2sha": {"master": "c33806c9ee11db205ee8c02a42e31b1c3128e299"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "9af87dcffebaa7faf167753cdcf371f54baee8b9", "author_name": "eliotmiller", "author_email": "ANONYMOUS", "date": "Fri, 25 Apr 2025 18:52:34 +0000", "date_ISO_8601": "2025-04-25 18:52:34 +0000", "relative_date": "1 year ago", "message_subject": "Update document 'ot_2762' via OpenTree API"}, {"id": "30290ad904c292a47717d7d5e4507cc4d7674220", "author_name": "eliotmiller", "author_email": "ANONYMOUS", "date": "Fri, 25 Apr 2025 18:51:12 +0000", "date_ISO_8601": "2025-04-25 18:51:12 +0000", "relative_date": "1 year ago", "message_subject": "Update document 'ot_2762' via OpenTree API"}, {"id": "a5622f9670599ebce940a6d2bd6e9f7339e0778d", "author_name": "eliotmiller", "author_email": "ANONYMOUS", "date": "Fri, 25 Apr 2025 18:48:40 +0000", "date_ISO_8601": "2025-04-25 18:48:40 +0000", "relative_date": "1 year ago", "message_subject": "Update document 'ot_2762' via OpenTree API"}, {"id": "becafbe4a0e53171281d6af314bf8adffcf44ac8", "author_name": "eliotmiller", "author_email": "ANONYMOUS", "date": "Wed, 16 Apr 2025 11:31:30 +0000", "date_ISO_8601": "2025-04-16 11:31:30 +0000", "relative_date": "1 year ago", "message_subject": "Update document 'ot_2762' via OpenTree API"}, {"id": "17a2cef4be00701b38b977a42824faaebfdb3e97", "author_name": "eliotmiller", "author_email": "ANONYMOUS", "date": "Wed, 16 Apr 2025 11:29:48 +0000", "date_ISO_8601": "2025-04-16 11:29:48 +0000", "relative_date": "1 year ago", "message_subject": "Update document 'ot_2762' via OpenTree API"}, {"id": "2a1c37914012257a350a51b59d9f6132b3c286c8", "author_name": "eliotmiller", "author_email": "ANONYMOUS", "date": "Wed, 16 Apr 2025 11:23:40 +0000", "date_ISO_8601": "2025-04-16 11:23:40 +0000", "relative_date": "1 year ago", "message_subject": "Update document 'ot_2762' via OpenTree API"}, {"id": "df0954f88025a058c4988c3846e250c6f9e00e92", "author_name": "eliotmiller", "author_email": "ANONYMOUS", "date": "Wed, 16 Apr 2025 11:22:33 +0000", "date_ISO_8601": "2025-04-16 11:22:33 +0000", "relative_date": "1 year ago", "message_subject": "Update document 'ot_2762' via OpenTree API"}, {"id": "21bc381b25bd21a37b43d9da6c978bedeccb815d", "author_name": "eliotmiller", "author_email": "ANONYMOUS", "date": "Wed, 16 Apr 2025 11:09:18 +0000", "date_ISO_8601": "2025-04-16 11:09:18 +0000", "relative_date": "1 year ago", "message_subject": "Update document 'ot_2762' via OpenTree API"}, {"id": "cf96aafdb7afb378afba05db1bbca34addbd5246", "author_name": "eliotmiller", "author_email": "ANONYMOUS", "date": "Wed, 16 Apr 2025 11:07:10 +0000", "date_ISO_8601": "2025-04-16 11:07:10 +0000", "relative_date": "1 year ago", "message_subject": "Update document 'ot_2762' via OpenTree API"}]}