pythonVersion 3.10.12 pythonImplementation CPython false Birds false Source data for tree(s) 'tree1' tree1 @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label @label ^ot:comment ^ot:ottId otu338 otu339 otu340 highestMintedElementIDs ^ot:nodeLabelMode ^ot:nodeLabelTimeUnit ^ot:reasonsToExcludeFromSynthesis eliotmiller Mark T. Holder 81461 Aves ot_2765 Feng, S., Stiller, J., Deng, Y., Armstrong, J., Fang, Q., Reeve, A. H., Xie, D., Chen, G., Guo, C., Faircloth, B. C., Petersen, B., Wang, Z., Zhou, Q., Diekhans, M., Chen, W., Andreu-Sánchez, S., Margaryan, A., Howard, J. T., Parent, C., … Zhang, G. (2020). Dense sampling of bird diversity increases power of comparative genomics. Nature, 587(7833), 252–257. https://doi.org/10.1038/s41586-020-2873-9 2020 Elachura formosa 3598440 Spelaeornis formosus Saxicola maurus 546578 Saxicola maurus Notiomystis cincta 1097188 Notiomystis cincta Cnemophilus loriae 310390 Cnemophilus loriae Aphelocoma coerulescens 175629 Aphelocoma coerulescens Corvus moneduloides 200022 Corvus moneduloides Corvus brachyrhynchos 331952 Corvus brachyrhynchos Lanius ludovicianus 551815 Lanius ludovicianus Myiagra hebetior 346149 Myiagra hebetior Paradisaea raggiana 499638 Paradisaea raggiana Struthidea cinerea 520286 Struthidea cinerea Ifrita kowaldi 242575 Ifrita kowaldi Ficedula albicollis 107840 Ficedula albicollis Dicrurus megarhynchus 597537 Dicrurus megarhynchus Rhipidura dahli 871288 Rhipidura dahli Edolisoma coerulescens 883543 Coracina coerulescens Chaetorhynchus papuensis 310386 Chaetorhynchus papuensis Dryoscopus gambensis 331949 Dryoscopus gambensis Dyaphorophyia castanea 471073 Dyaphorophyia castanea Mystacornis crossleyi 503738 Mystacornis crossleyi Machaerirhynchus nigripectus 523967 Machaerirhynchus nigripectus Gymnorhina tibicen 464854 Gymnorhina tibicen Rhagologus leucostigma 226273 Rhagologus leucostigma Erithacus rubecula 507122 Erithacus rubecula Vireo altiloquus 48944 Vireo altiloquus Erpornis zantholeuca 602539 Erpornis zantholeuca Pteruthius melanotis 41271 Pteruthius melanotis Oreocharis arfaki 875031 Oreocharis arfaki Oriolus oriolus 299687 Oriolus oriolus Daphoenositta chrysoptera 439404 Daphoenositta chrysoptera Eulacestoma nigropectus 663331 Eulacestoma nigropectus Pachycephala philippinensis 1001535 Pachycephala philippinensis Aleadryas rufinucha 89244 Aleadryas rufinucha Ptilorrhoa leucosticta 665634 Ptilorrhoa leucosticta Copsychus sechellarum 662919 Copsychus sechellarum Falcunculus frontatus 965222 Falcunculus frontatus Mohoua ochrocephala 452017 Mohoua ochrocephala Pomatostomus ruficeps 565804 Pomatostomus ruficeps Orthonyx spaldingii 488743 Orthonyx spaldingii Grantiella picta 527599 Grantiella picta Origma solitaria 827145 Origma solitaria Pardalotus punctatus 1066393 Pardalotus punctatus Dasyornis broadbenti 196938 Dasyornis broadbenti Malurus elegans 827140 Malurus elegans Ptilonorhynchus violaceus 187409 Ptilonorhynchus violaceus Catharus fuscescens 545761 Catharus fuscescens Climacteris rufus 531212 Climacteris rufus Menura novaehollandiae 531206 Menura novaehollandiae Atrichornis clamosus 1031586 Atrichornis clamosus Furnarius figulus 475744 Furnarius figulus Campylorhamphus procurvoides 12255 Campylorhamphus procurvoides Xiphorhynchus elegans 443016 Xiphorhynchus elegans Sclerurus mexicanus 806162 Sclerurus mexicanus Formicarius rufipectus 227774 Formicarius rufipectus Scytalopus superciliaris 840823 Scytalopus superciliaris Grallaria varia 1091665 Grallaria varia Leucopsar rothschildi 863246 Leucopsar rothschildi Rhegmatorhina hoffmannsi 1092626 Rhegmatorhina hoffmannsi Sakesphorus luctuosus 394152 Sakesphorus luctuosus Tyrannus savana 36409 Tyrannus savana Neopipo cinnamomea 636756 Neopipo cinnamomea Mionectes macconnelli 1015939 Mionectes macconnelli Tachuris rubrigastra 187657 Tachuris rubrigastra Piprites chloris 456266 Piprites chloris Lepidothrix coronata 49248 Lepidothrix coronata Manacus manacus 129404 Manacus manacus Pachyramphus minor 835165 Pachyramphus minor Sturnus vulgaris 565813 Sturnus vulgaris Onychorhynchus coronatus 179648 Onychorhynchus coronatus Oxyruncus cristatus 931726 Oxyruncus cristatus Cephalopterus ornatus 860310 Cephalopterus ornatus Calyptomena viridis 26175 Calyptomena viridis Smithornis capensis 283120 Smithornis capensis Serilophus lunatus 768994 Serilophus lunatus Neodrepanis coruscans 540005 Neodrepanis coruscans Sapayoa aenigma 395861 Sapayoa aenigma Pitta sordida 44876 Pitta sordida Acanthisitta chloris 1085740 Acanthisitta chloris Rhabdornis inornatus 482511 Rhabdornis inornatus Melopsittacus undulatus 734818 Melopsittacus undulatus Agapornis roseicollis 174401 Agapornis roseicollis Amazona guildingii 1073065 Amazona guildingii Eolophus roseicapilla 900913 Eolophus roseicapillus Probosciger aterrimus 645854 Probosciger aterrimus Nestor notabilis 749203 Nestor notabilis Falco peregrinus 786435 Falco peregrinus Falco cherrug 1001807 Falco cherrug Herpetotheres cachinnans 438655 Herpetotheres cachinnans Chunga burmeisteri 3600042 Chunga burmeisteri Toxostoma redivivum 1085996 Toxostoma redivivum Cariama cristata 86685 Cariama cristata Ciccaba nigrolineata 125910 Ciccaba nigrolineata Strix occidentalis 273899 Strix occidentalis Glaucidium brasilianum 933120 Glaucidium brasilianum Tyto alba 1065606 Tyto alba Buceros rhinoceros 785189 Buceros rhinoceros Bucorvus abyssinicus 991309 Bucorvus abyssinicus Rhinopomastus cyanomelas 49610 Rhinopomastus cyanomelas Upupa epops 412129 Upupa epops Picoides pubescens 873958 Picoides pubescens Buphagus erythrorhynchus 968664 Buphagus erythrorhynchus Indicator maculatus 552486 Indicator maculatus Ramphastos sulfuratus 1030674 Ramphastos sulfuratus Semnornis frantzii 542000 Semnornis frantzii Eubucco bourcierii 815705 Eubucco bourcierii Tricholaema leucomelas 214987 Tricholaema leucomelas Psilopogon haemacephalus 738739 Megalaima haemacephala Bucco capensis 483807 Bucco capensis Galbula dea 721164 Galbula dea Ceyx cyanopectus 838161 Alcedo cyanopectus Chloroceryle aenea 986901 Chloroceryle aenea Sinosuthora webbiana 802901 Paradoxornis webbianus Cinclus mexicanus 606627 Cinclus mexicanus Halcyon senegalensis 234474 Halcyon senegalensis Baryphthengus martii 88377 Baryphthengus martii Todus mexicanus 741575 Todus mexicanus Merops nubicus 989087 Merops nubicus Eurystomus gularis 704138 Eurystomus gularis Brachypteracias leptosomus 483805 Brachypteracias leptosomus Apaloderma vittatum 291857 Apaloderma vittatum Trogon melanurus 1065612 Trogon melanurus Leptosomus discolor 897867 Leptosomus discolor Colius striatus 462544 Colius striatus Phainopepla nitens 33427 Phainopepla nitens Urocolius indicus 1094061 Urocolius indicus Aquila chrysaetos 263127 Aquila chrysaetos Spizaetus tyrannus 806941 Spizaetus tyrannus Haliaeetus leucocephalus 1012350 Haliaeetus leucocephalus Haliaeetus albicilla 263118 Haliaeetus albicilla Circaetus pectoralis 103125 Circaetus pectoralis Pandion haliaetus 509837 Pandion haliaetus Sagittarius serpentarius 1036186 Sagittarius serpentarius Cathartes aura 9106 Cathartes aura Opisthocomus hoazin 928360 Opisthocomus hoazin Bombycilla garrulus 613881 Bombycilla garrulus Jacana jacana 332005 Jacana jacana Rostratula benghalensis 5276 Rostratula benghalensis Nycticryphes semicollaris 953621 Nycticryphes semicollaris Pedionomus torquatus 163953 Pedionomus torquatus Thinocorus orbignyianus 628490 Thinocorus orbignyianus Calidris pugnax 1090732 Calidris pugnax Arenaria interpres 821753 Arenaria interpres Limosa lapponica 304018 Limosa lapponica Phaetusa simplex 341044 Phaetusa simplex Larus smithsonianus 526679 Larus smithsonianus Chlorodrepanis virens 157610 Hemignathus virens Rissa tridactyla 585161 Rissa tridactyla Rynchops niger 738512 Rynchops niger Chroicocephalus maculipennis 698967 Chroicocephalus maculipennis Uria lomvia 551817 Uria lomvia Uria aalge 820016 Uria aalge Alca torda 855485 Alca torda Cepphus grylle 280901 Cepphus grylle Stercorarius parasiticus 742640 Stercorarius parasiticus Dromas ardeola 383929 Dromas ardeola Rhinoptilus africanus 57833 Rhinoptilus africanus Leptocoma aspasia 7661432 Leptocoma aspasia Glareola pratincola 980449 Glareola pratincola Turnix velox 3600478 Turnix velox Ibidorhyncha struthersii 651064 Ibidorhyncha struthersii Himantopus himantopus 364171 Himantopus himantopus Charadrius alexandrinus 112947 Charadrius alexandrinus Charadrius vociferus 661811 Charadrius vociferus Chionis minor 738515 Chionis minor Pluvianellus socialis 227451 Pluvianellus socialis Burhinus bistriatus 57829 Burhinus bistriatus Podiceps cristatus 92263 Podiceps cristatus Dicaeum eximium 223166 Dicaeum eximium Podilymbus podiceps 962399 Podilymbus podiceps Phoenicopterus ruber 443650 Phoenicopterus ruber Phalacrocorax harrisi 409434 Nannopterum harrisi Phalacrocorax brasilianus 109023 Nannopterum brasilianus Phalacrocorax auritus 170200 Nannopterum auritus Phalacrocorax carbo 969841 Phalacrocorax carbo Anhinga anhinga 170196 Anhinga anhinga Anhinga rufa 986356 Anhinga rufa Sula dactylatra 170197 Sula dactylatra Fregata magnificens 330000 Fregata magnificens Lonchura striata 306760 Lonchura striata Egretta garzetta 273425 Egretta garzetta Cochlearius cochlearius 154815 Cochlearius cochlearius Pelecanus crispus 427900 Pelecanus crispus Balaeniceps rex 464697 Balaeniceps rex Scopus umbretta 464704 Scopus umbretta Nipponia nippon 946418 Nipponia nippon Mesembrinibis cayennensis 674305 Mesembrinibis cayennensis Ciconia maguari 324161 Ciconia maguari Oceanites oceanicus 656591 Oceanites oceanicus Fregetta grallaria 82197 Fregetta grallaria Taeniopygia guttata 708327 Taeniopygia guttata Calonectris borealis 3595600 Calonectris borealis Fulmarus glacialis 1028832 Fulmarus glacialis Pelecanoides urinatrix 904486 Pelecanoides urinatrix Hydrobates tethys 603905 Hydrobates tethys Thalassarche chlororhynchos 663145 Thalassarche chlororhynchos Pygoscelis adeliae 494357 Pygoscelis adeliae Aptenodytes forsteri 494370 Aptenodytes forsteri Gavia stellata 1057044 Gavia stellata Rhynochetos jubatus 86672 Rhynochetos jubatus Eurypyga helias 86680 Eurypyga helias Vidua macroura 175250 Vidua macroura Phaethon lepturus 855119 Phaethon lepturus Heliornis fulica 440618 Heliornis fulica Atlantisia rogersi 3599985 Atlantisia rogersi Psophia crepitans 915643 Psophia crepitans Grus americana 414356 Grus americana Balearica regulorum 191006 Balearica regulorum Aramus guarauna 1095362 Aramus guarauna Ardeotis kori 521837 Ardeotis kori Lophotis ruficrista 5031 Lophotis ruficrista Chlamydotis macqueenii 787600 Chlamydotis macqueenii Vidua chalybeata 622887 Vidua chalybeata Piaya cayana 891422 Piaya cayana Ceuthmochares aereus 3602243 Ceuthmochares aereus Cuculus canorus 792628 Cuculus canorus Centropus bengalensis 4947399 Centropus bengalensis Centropus unirufus 595245 Centropus unirufus Crotophaga sulcirostris 1041415 Crotophaga sulcirostris Geococcyx californianus 212182 Geococcyx californianus Corythaixoides concolor 842342 Corythaixoides concolor Tauraco erythrolophus 487306 Tauraco erythrolophus Corythaeola cristata 842345 Corythaeola cristata Polioptila caerulea 443266 Polioptila caerulea Ploceus nigricollis 282521 Ploceus nigricollis Alopecoenas beccarii 550862 Alopecoenas beccarii Caloenas nicobarica 1032058 Caloenas nicobarica Patagioenas fasciata 148378 Patagioenas fasciata Columba livia 938416 Columba livia Columbina picui 54405 Columbina picui Pterocles gutturalis 57819 Pterocles gutturalis Syrrhaptes paradoxus 817590 Syrrhaptes paradoxus Pterocles burchelli 3596810 Pterocles burchelli Mesitornis unicolor 966316 Mesitornis unicolor Calypte anna 810756 Calypte anna Geospiza fortis 589951 Geospiza fortis Oreotrochilus melanogaster 62611 Oreotrochilus melanogaster Chaetura pelagica 609785 Chaetura pelagica Hemiprocne comata 1077292 Hemiprocne comata Aegotheles bennettii 540032 Aegotheles bennettii Podargus strigoides 313120 Podargus strigoides Nyctibius grandis 178249 Nyctibius grandis Nyctibius bracteatus 178250 Nyctibius bracteatus Steatornis caripensis 701548 Steatornis caripensis Nyctiprogne leucopyga 51270 Nyctiprogne leucopyga Chordeiles acutipennis 484902 Chordeiles acutipennis Sporophila hypoxantha 128450 Sporophila hypoxantha Antrostomus carolinensis 416426 Antrostomus carolinensis Tympanuchus cupido 728073 Tympanuchus cupido Meleagris gallopavo 446482 Meleagris gallopavo Phasianus colchicus 102719 Phasianus colchicus Gallus gallus 153563 Gallus gallus Coturnix japonica 803622 Coturnix japonica Callipepla squamata 728092 Callipepla squamata Colinus virginianus 204709 Colinus virginianus Odontophorus gujanensis 329457 Odontophorus gujanensis Numida meleagris 684046 Numida meleagris Nesospiza acunhae 957952 Nesospiza acunhae Penelope pileata 1024688 Penelope pileata Alectura lathami 570956 Alectura lathami Asarcornis scutulata 30843 Asarcornis scutulata Anas zonorhyncha 30850 Anas zonorhyncha Anas platyrhynchos 765167 Anas platyrhynchos Cairina moschata 714469 Cairina moschata Anseranas semipalmata 714464 Anseranas semipalmata Chauna torquata 860132 Chauna torquata Panurus biarmicus Regulus satrapa Cardinalis cardinalis 307364 Cardinalis cardinalis Zapornia atra Apteryx rowi 165688 Apteryx rowi Apteryx australis 241834 Apteryx australis Apteryx haastii 241836 Apteryx haastii Apteryx owenii 241844 Apteryx owenii Casuarius casuarius 589152 Casuarius casuarius Dromaius novaehollandiae 829513 Dromaius novaehollandiae Crypturellus undulatus 870607 Crypturellus undulatus Crypturellus cinnamomeus 3600791 Crypturellus cinnamomeus Crypturellus soui 960236 Crypturellus soui Passerina amoena 119888 Passerina amoena Tinamus guttatus 306216 Tinamus guttatus Nothoprocta ornata 332613 Nothoprocta ornata Nothoprocta perdicaria 402446 Nothoprocta perdicaria Nothoprocta pentlandii 3600805 Nothoprocta pentlandii Eudromia elegans 292461 Eudromia elegans Nothocercus nigrocapillus 3600813 Nothocercus nigrocapillus Nothocercus julius 3600814 Nothocercus julius Rhea pennata 857860 Pterocnemia pennata Rhea americana 857864 Rhea americana Struthio camelus 647692 Struthio camelus Pheucticus melanocephalus 425436 Pheucticus melanocephalus Calcarius ornatus 765406 Calcarius ornatus Rhodinocichla rosea 817637 Rhodinocichla rosea Melospiza melodia 265548 Melospiza melodia Thryothorus ludovicianus 1036137 Thryothorus ludovicianus Zonotrichia albicollis 265547 Zonotrichia albicollis Junco hyemalis 989502 Junco hyemalis Spizella passerina 989504 Spizella passerina Emberiza fucata 802893 Emberiza fucata Setophaga coronata 451168 Setophaga coronata Setophaga kirtlandii 34665 Setophaga kirtlandii Quiscalus mexicanus 743411 Quiscalus mexicanus Molothrus ater 213450 Molothrus ater Agelaius phoeniceus 226605 Agelaius phoeniceus Loxia curvirostra 298778 Loxia curvirostra Certhia familiaris 1007196 Certhia familiaris Loxia leucoptera 1060528 Loxia leucoptera Serinus canaria 464865 Serinus canaria Hemignathus wilsoni 324561 Hemignathus wilsoni Motacilla alba 695336 Motacilla alba Passer domesticus 745175 Passer domesticus Hypocryptadius cinnamomeus 840030 Hypocryptadius cinnamomeus Prunella fulvescens 795160 Prunella fulvescens Prunella himalayana 795159 Prunella himalayana Urocynchramus pylzowi 469177 Urocynchramus pylzowi Peucedramus taeniatus 370807 Peucedramus taeniatus Certhia brachydactyla 1007172 Certhia brachydactyla Chloropsis cyanopogon 608137 Chloropsis cyanopogon Chloropsis hardwickii 797578 Chloropsis hardwickii Irena cyanogastra 176452 Irena cyanogastra Promerops cafer 843515 Promerops cafer Sylvia borin 261410 Sylvia borin Sylvia atricapilla 726312 Sylvia atricapilla Leiothrix lutea 965458 Leiothrix lutea Illadopsis cleaveri 1028018 Illadopsis cleaveri Pomatorhinus ruficollis 154418 Pomatorhinus ruficollis Zosterops lateralis 819155 Zosterops lateralis Sitta europaea 82242 Sitta europaea Zosterops hypoxanthus 3598281 Zosterops hypoxanthus Sterrhoptilus dennistouni 7068665 Sterrhoptilus dennistouni Pycnonotus jocosus 778857 Pycnonotus jocosus Brachypodius atriceps 778855 Brachypodius atriceps Cettia cetti 1010418 Cettia cetti Erythrocercus mccallii 72470 Erythrocercus mccallii Aegithalos caudatus 467867 Aegithalos caudatus Rhadina sibilatrix 6153747 Phylloscopus sibillatrix Hylia prasina 3360 Hylia prasina Phylloscopus trochilus 96282 Phylloscopus trochilus Tichodroma muraria 452744 Tichodroma muraria Hirundo rustica 1040135 Hirundo rustica Acrocephalus arundinaceus 800677 Acrocephalus arundinaceus Hippolais icterina 433851 Hippolais icterina Locustella ochotensis 326781 Locustella ochotensis Donacobius atricapilla 636360 Donacobius atricapilla Oxylabes madagascariensis 353520 Oxylabes madagascariensis Cisticola juncidis 24056 Cisticola juncidis Horornis vulcanius 355463 Cettia vulcania Sylvietta virens 759577 Sylvietta virens Nicator chloris 814747 Nicator chloris Oenanthe oenanthe 1092950 Oenanthe oenanthe Alaudala cheleensis 947048 Alaudala cheleensis Poecile atricapillus 17262 Poecile atricapillus Parus major 515143 Parus major Pseudopodoces humilis 875992 Pseudopodoces humilis Anthoscopus minutus 73144 Anthoscopus minutus Drymodes brunneopygia 1061814 Drymodes brunneopygia Chaetops frenatus 360543 Chaetops frenatus Picathartes gymnocephalus 699623 Picathartes gymnocephalus Melanocharis versteri 1015949 Melanocharis versteri Callaeas wilsoni 3597860 Callaeas wilsoni ot:undefined node1 need an update to the taxonomy node1 false true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true 0 0 704 0 705 359 2 1 2