pythonVersion 3.10.12 pythonImplementation CPython false Annelids _ ^(\S*)\s+\b _n.sp.2 __ _cf._ _n.sp._TCP _sp.\d+ TCP _sp._LA1 false Source data for tree(s) 'tree1'. Based on concatenated analysis of five genes. A topological constraint based on larger transcriptomic phylogeny for major lineages was applied. tree1 ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar otu1 otu2 otu10 otu9 otu11 otu12 otu115 otu116 otu125 otu126 otu131 otu132 otu20 otu21 otu23 otu3 otu4 otu61 otu62 otu65 otu66 otu7 otu8 otu77 otu78 otu84 otu85 otu89 otu90 otu94 otu95 ^ot:comment highestMintedElementIDs ^ot:branchLengthTimeUnit ^ot:nodeLabelMode ^ot:nodeLabelTimeUnit ^ot:reasonsToExcludeFromSynthesis Josefin Stiller 466490 Terebellida ot_2783 Stiller, J., Tilic, E., Rousset, V., Pleijel, F., & Rouse, G. W. (2020). Spaghetti to a Tree: A Robust Phylogeny for Terebelliformia (Annelida) Based on Transcriptomes, Molecular and Morphological Data. Biology, 9(4), 73. https://doi.org/10.3390/biology9040073 2020 ALV Alvinella caudata 695610 Alvinella caudata ALV Paralvinella grasslei TCP 463481 Paralvinella grasslei TER Paraeupolymnia carus 4975132 Lanicola carus TER Pista australis 834692 Pista australis TER Pista cristata 572300 Pista cristata TER Proclea malmgreni 4975323 Proclea malmgreni TER_Reteterebella_cf._aloba 4975120 Reteterebella aloba TER Scionella lornensis 4974868 Pista lornensis TER Spinosphaera hutchingsae 4975150 Spinosphaera hutchingsae TER Terebella lapidaria 491820 Terebella lapidaria THE Rhinothelepus lobatus 939970 Rhinothelepus lobatus THE Streblosoma kaia 4975058 Streblosoma kaia ALV Paralvinella palmiformis 743447 Paralvinella palmiformis THE Streblosoma pacifica 4975060 Streblosoma pacifica THE Thelepus antarcticus 4974808 Thelepus antarcticus THE Thelepus australiensis 4974815 Thelepus australiensis THE_Thelepus_cf._pascua 4975258 Thelepus pascua THE Thelepus cincinnatus 695770 Thelepus cincinnatus THE_Thelepus_n.sp.2 784741 Thelepus THE_Thelepus_n.sp._TCP 784741 Thelepus THE Thelepus verrilli 7490789 Thelepus verrilli TRI Octobranchus lingulatus 4975865 Octobranchus lingulatus TRI_Octobranchus_sp. 353651 Octobranchus ALV Paralvinella palmiformis TCP 743447 Paralvinella palmiformis TRI Terebellides atlantis 4975885 Terebellides atlantis TRI Terebellides bigeniculatus 5705088 Terebellides bigeniculatus TRI Terebellides gracilis 4975902 Terebellides gracilis TRI Terebellides irinae 4975897 Terebellides irinae TRI Terebellides shetlandica 6327599 Terebellides shetlandica TRI_Terebellides_sp.25_TCP 911579 Terebellides TRI_Terebellides_sp._LA1 911579 Terebellides TRI Terebellides stroemii 976565 Terebellides stroemii TRI Terebellides williamsae 7491025 Terebellides williamsae TRI_Trichobranchus_cf._bibranchiatus 6520623 Trichobranchus bibranchiatus ALV Paralvinella sulfincola 1083569 Paralvinella sulfincola TRI Trichobranchus hancocki 4975930 Trichobranchus hancocki TRI Trichobranchus roseus 4975876 Trichobranchus roseus TRI Trichobranchus roseus TCP 4975876 Trichobranchus roseus TRI Trichobranchus tribranchiata 6520624 Trichobranchus tribranchiata AMP Amage auricula 4975596 Amage auricula AMP Amage sculpta 4975595 Amage sculpta AMP Amagopsis klugei 4975610 Grubianella klugei AMP Ampharete acutifrons 620562 Ampharete acutifrons AMP Ampharete falcata 4975538 Ampharete falcata AMP Ampharete finmarchica 4166748 Ampharete finmarchica ALV Alvinella caudata TCP 695610 Alvinella caudata AMP_Amphicteis_cf._gunneri_group2 4975467 Amphicteis gunneri AMP_Amphicteis_cf._gunneri_group4_TCP 4975467 Amphicteis gunneri AMP Amphicteis dalmatica 414336 Amphicteis dalmatica AMP Amphicteis gunneri 4975467 Amphicteis gunneri AMP Amphicteis ninonae 4975482 Amphicteis ninonae AMP Amphicteis obscurior 4975461 Amphicteis obscurior AMP Amphisamytha carldarei TCP 4166731 Amphisamytha carldarei AMP Amphisamytha jacksoni 4166735 Amphisamytha jacksoni AMP Amythas membranifera 4975710 Amythas membranifera AMP Anobothrus gracilis 40346 Anobothrus gracilis ALV Alvinella pompejana 466493 Alvinella pompejana AMP Anobothrus laubieri 4975447 Anobothrus laubieri AMP_Anobothrus_sp._EP_B_TCP 40345 Anobothrus AMP Asabellides californica 4975550 Ampharete californica AMP Auchenoplax crinita 899033 Auchenoplax crinita AMP Auchenoplax worsfoldi 5693206 Auchenoplax worsfoldi AMP Eclysippe eliasoni 4975554 Eclysippe eliasoni AMP Eclysippe vanelli 1049818 Eclysippe vanelli AMP Glyphanostomum pallescens 4975454 Glyphanostomum pallescens AMP_Grassleia_cf._hydrothermalis 4975794 Grassleia hydrothermalis AMP Hypania invalida TCP 4975585 Hypania invalida ALV Alvinella pompejana TCP 466493 Alvinella pompejana AMP Lysippe labiata 4975640 Lysippe labiata AMP Mugga wahrbergi 4166752 Mugga wahrbergi AMP Neosabellides elongatus 4975555 Ampharete elongata AMP Neosabellides lizae 7490673 Neosabellides lizae AMP_Noanelia_sp. 4975786 Noanelia AMP Paralysippe annectens 1053492 Paralysippe annectens AMP Paramytha ossicola 6327525 Paramytha ossicola AMP Paramytha schanderi 6327526 Paramytha schanderi AMP Pavelius smileyi 6327528 Pavelius smileyi AMP_Pavelius_sp._EP_B 4975667 Pavelius ALV Nautalvinella irlandei TCP 5705090 Paralvinella pandorae irlandei AMP Pavelius uschakovi 4975668 Pavelius uschakovi AMP Sabellides octocirrata 4166750 Sabellides octocirrata AMP Samytha sexcirrata 1053494 Samytha sexcirrata AMP Samythella neglecta 4975777 Samythella neglecta AMP Sosane sulcata 4975632 Sosane sulcata AMP Sosane wireni 4975634 Sosane wireni MEL Isolda bipinnata 4975486 Isolda bipinnata MEL Isolda pulchella 349838 Isolda pulchella MEL Melinna albicincta 4166747 Melinna albicincta MEL Melinna cristata 974917 Melinna cristata ALV Nautalvinella pandorae 740079 Paralvinella pandorae MEL Melinna heterodonta 4975492 Melinna heterodonta MEL Melinna oculata 4975505 Melinna oculata MEL Melinna oculata TCP 4975505 Melinna oculata OUT Arenicola marina 941625 Arenicola marina PEC Pectinaria auricoma 40349 Pectinaria auricoma PEC Pectinaria gouldii 425449 Pectinaria gouldii PEC Pectinaria gouldii TCP 425449 Pectinaria gouldii PEC Pectinaria granulata 953516 Pectinaria granulata PEC Pectinaria hyperborea 898499 Pectinaria hyperborea PEC Pectinaria koreni 5972939 Pectinaria koreni ALV Paralvinella fijiensis 911558 Paralvinella fijiensis PEC Petta pusilla 4975384 Petta pusilla POL Amaeana trilobata 364348 Amaeana trilobata POL_Biremis_cf._blandi 4975188 Biremis blandi POL Hauchiella renilla 4975199 Hauchiella renilla POL_Lysilla_cf._pacifica 991316 Lysilla pacifica POL Polycirrus arcticus 4974976 Polycirrus arcticus POL Polycirrus californicus 4974952 Polycirrus californicus POL Polycirrus carolinensis 4166663 Polycirrus carolinensis POL Polycirrus carolinensis TCP 4166663 Polycirrus carolinensis POL Polycirrus eximius 409886 Polycirrus eximius ALV Paralvinella fijiensis TCP 911558 Paralvinella fijiensis POL Polycirrus norvegicus 4974966 Polycirrus norvegicus TER Artacama crassa 4974919 Artacama crassa TER Artacama proboscidea 1084887 Artacama proboscidea TER Axionice maculata 144365 Pista maculata TER Eupolymnia crassicornis 4974733 Eupolymnia crassicornis TER Eupolymnia crassicornis TCP 4974733 Eupolymnia crassicornis TER Eupolymnia nebulosa 394956 Eupolymnia nebulosa TER Eupolymnia rullieri 4974736 Eupolymnia rullieri TER Lanassa venusta 4975240 Lanassa venusta TER Lanice conchilega 247689 Lanice conchilega ALV Paralvinella grasslei 463481 Paralvinella grasslei TER Lanice conchilega TCP 247689 Lanice conchilega TER Lanicola lobata 4975131 Lanicola lobata TER Laphania boecki 4975125 Laphania boecki TER Leaena ebranchiata 4975176 Leaena ebranchiata TER Loimia bermudensis 4974775 Loimia bermudensis TER Loimia bermudensis TCP 4974775 Loimia bermudensis TER Loimia minuta 4974766 Loimia minuta TER Loimia salazari 4974764 Loimia salazari TER Neoamphitrite affinis 4974757 Neoamphitrite affinis TER Neoamphitrite robusta TCP 4974750 Neoamphitrite robusta ot:substitutionCount Maximum likelihood node250 tree1_ROOT false true true true true false true true true false true true true false true true true false true true true false true true true true true true true true true true true false true false true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true false true true true true true true true true true false true true true true true true true true true true true true true true true false true true true true true true true true true false true true true false true true true true true true true true true true true true true true true true false true true true true true true true true true true true true true true false true true true true true true false true true true true false true true true true 0 0 263 0 264 133 2 1 2