{"sha": "7a486baf17f28360e5b100094e86d95ecc5c82bf", "data": {"nexml": {"@about": "#study", "@generator": "Open Tree API", "@id": "study", "@nexml2json": "0.0.0", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xhtml": "http://www.w3.org/1999/xhtml/vocab#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "otus": {"@id": "otus1", "otu": [{"@id": "otu1", "@about": "#otu1", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Pluvialis squatarola"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 917054}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Pluvialis squatarola"}]}, {"@id": "otu10", "@about": "#otu10", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Thinornis rubricollis"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 827421}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Thinornis rubricollis"}]}, {"@id": "otu11", "@about": "#otu11", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Thinornis novaeseelandiae"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 129402}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Thinornis novaeseelandiae"}]}, {"@id": "otu12", "@about": "#otu12", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius placidus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 3596999}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius placidus"}]}, {"@id": "otu13", "@about": "#otu13", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius dubius"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 274628}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius dubius"}]}, {"@id": "otu14", "@about": "#otu14", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius asiaticus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 3597000}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius asiaticus"}]}, {"@id": "otu15", "@about": "#otu15", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius veredus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 661810}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius veredus"}]}, {"@id": "otu16", "@about": "#otu16", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius mongolus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 341980}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius mongolus"}]}, {"@id": "otu17", "@about": "#otu17", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius leschenaultii"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 1040108}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius leschenaultii"}]}, {"@id": "otu18", "@about": "#otu18", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius bicinctus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 112941}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius bicinctus"}]}, {"@id": "otu19", "@about": "#otu19", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Anarhynchus frontalis"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 703810}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Anarhynchus frontalis"}]}, {"@id": "otu2", "@about": "#otu2", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius modestus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 670132}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius modestus"}]}, {"@id": "otu20", "@about": "#otu20", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius obscurus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 3596992}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius obscurus"}]}, {"@id": "otu21", "@about": "#otu21", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius wilsonia"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 234675}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius wilsonia"}]}, {"@id": "otu22", "@about": "#otu22", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius collaris"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 112942}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius collaris"}]}, {"@id": "otu23", "@about": "#otu23", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius montanus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 112937}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius montanus"}]}, {"@id": "otu24", "@about": "#otu24", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius alticola"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 994342}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius alticola"}]}, {"@id": "otu25", "@about": "#otu25", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius falklandicus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 112943}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius falklandicus"}]}, {"@id": "otu26", "@about": "#otu26", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius thoracicus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 3597004}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius thoracicus"}]}, {"@id": "otu27", "@about": "#otu27", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius sanctaehelenae"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 3596996}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius sanctaehelenae"}]}, {"@id": "otu28", "@about": "#otu28", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius pecuarius"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 856355}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius pecuarius"}]}, {"@id": "otu29", "@about": "#otu29", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius ruficapillus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 112938}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius ruficapillus"}]}, {"@id": "otu3", "@about": "#otu3", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Eudromias morinellus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 238463}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius morinellus"}]}, {"@id": "otu30", "@about": "#otu30", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius nivosus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 331463}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius nivosus"}]}, {"@id": "otu31", "@about": "#otu31", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius pallidus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 3596993}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius pallidus"}]}, {"@id": "otu32", "@about": "#otu32", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius peronii"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 331466}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius peronii"}]}, {"@id": "otu33", "@about": "#otu33", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius marginatus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 349797}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius marginatus"}]}, {"@id": "otu34", "@about": "#otu34", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius alexandrinus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 112947}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius alexandrinus"}]}, {"@id": "otu4", "@about": "#otu4", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius tricollaris"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 3596997}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius tricollaris"}]}, {"@id": "otu5", "@about": "#otu5", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius vociferus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 661811}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius vociferus"}]}, {"@id": "otu6", "@about": "#otu6", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius hiaticula"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 425445}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius hiaticula"}]}, {"@id": "otu7", "@about": "#otu7", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius melodus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 234677}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius melodus"}]}, {"@id": "otu8", "@about": "#otu8", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius semipalmatus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 661809}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius semipalmatus"}]}, {"@id": "otu9", "@about": "#otu9", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Charadrius forbesi"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 3596998}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Charadrius forbesi"}]}], "@about": "#otus1"}, "trees": {"@otus": "otus1", "@id": "trees1", "tree": [{"@label": "Fig. 1(b) *BEAST", "@xsi:type": "nex:FloatTree", "node": [{"@root": true, "@id": "node1", "@about": "#node1"}, {"@otu": "otu1", "@id": "node2", "@about": "#node2", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node3", "@about": "#node3"}, {"@id": "node27", "@about": "#node27"}, {"@id": "node28", "@about": "#node28"}, {"@id": "node29", "@about": "#node29"}, {"@otu": "otu14", "@id": "node30", "@about": "#node30", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu15", "@id": "node31", "@about": "#node31", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node32", "@about": "#node32"}, {"@otu": "otu16", "@id": "node33", "@about": "#node33", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu17", "@id": "node34", "@about": "#node34", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node35", "@about": "#node35"}, {"@id": "node36", "@about": "#node36"}, {"@otu": "otu18", "@id": "node37", "@about": "#node37", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node38", "@about": "#node38"}, {"@otu": "otu19", "@id": "node39", "@about": "#node39", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu20", "@id": "node40", "@about": "#node40", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node41", "@about": "#node41"}, {"@id": "node42", "@about": "#node42"}, {"@id": "node43", "@about": "#node43"}, {"@otu": "otu21", "@id": "node44", "@about": "#node44", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu22", "@id": "node45", "@about": "#node45", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node46", "@about": "#node46"}, {"@otu": "otu23", "@id": "node47", "@about": "#node47", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node48", "@about": "#node48"}, {"@otu": "otu24", "@id": "node49", "@about": "#node49", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu25", "@id": "node50", "@about": "#node50", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node51", "@about": "#node51"}, {"@id": "node52", "@about": "#node52"}, {"@otu": "otu26", "@id": "node53", "@about": "#node53", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node54", "@about": "#node54"}, {"@otu": "otu27", "@id": "node55", "@about": "#node55", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu28", "@id": "node56", "@about": "#node56", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node57", "@about": "#node57"}, {"@otu": "otu29", "@id": "node58", "@about": "#node58", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node59", "@about": "#node59"}, {"@otu": "otu30", "@id": "node60", "@about": "#node60", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node61", "@about": "#node61"}, {"@otu": "otu31", "@id": "node62", "@about": "#node62", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node63", "@about": "#node63"}, {"@otu": "otu32", "@id": "node64", "@about": "#node64", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node65", "@about": "#node65"}, {"@otu": "otu33", "@id": "node66", "@about": "#node66", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu34", "@id": "node67", "@about": "#node67", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node4", "@about": "#node4"}, {"@otu": "otu2", "@id": "node5", "@about": "#node5", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node6", "@about": "#node6"}, {"@otu": "otu3", "@id": "node7", "@about": "#node7", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node8", "@about": "#node8"}, {"@otu": "otu4", "@id": "node9", "@about": "#node9", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node10", "@about": "#node10"}, {"@id": "node11", "@about": "#node11"}, {"@otu": "otu5", "@id": "node12", "@about": "#node12", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node13", "@about": "#node13"}, {"@otu": "otu6", "@id": "node14", "@about": "#node14", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node15", "@about": "#node15"}, {"@otu": "otu7", "@id": "node16", "@about": "#node16", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu8", "@id": "node17", "@about": "#node17", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node18", "@about": "#node18"}, {"@id": "node19", "@about": "#node19"}, {"@otu": "otu9", "@id": "node20", "@about": "#node20", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu10", "@id": "node21", "@about": "#node21", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node22", "@about": "#node22"}, {"@otu": "otu11", "@id": "node23", "@about": "#node23", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node24", "@about": "#node24"}, {"@otu": "otu12", "@id": "node25", "@about": "#node25", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu13", "@id": "node26", "@about": "#node26", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}], "edge": [{"@length": 0.03421, "@source": "node1", "@target": "node2", "@id": "edge1", "@about": "#edge1"}, {"@length": 0.003921, "@source": "node1", "@target": "node3", "@id": "edge2", "@about": "#edge2"}, {"@length": 0.019316, "@source": "node3", "@target": "node27", "@id": "edge26", "@about": "#edge26"}, {"@length": 0.001682, "@source": "node27", "@target": "node28", "@id": "edge27", "@about": "#edge27"}, {"@length": 0.003142, "@source": "node28", "@target": "node29", "@id": "edge28", "@about": "#edge28"}, {"@length": 0.006149, "@source": "node29", "@target": "node30", "@id": "edge29", "@about": "#edge29"}, {"@length": 0.006149, "@source": "node29", "@target": "node31", "@id": "edge30", "@about": "#edge30"}, {"@length": 0.004924, "@source": "node28", "@target": "node32", "@id": "edge31", "@about": "#edge31"}, {"@length": 0.004367, "@source": "node32", "@target": "node33", "@id": "edge32", "@about": "#edge32"}, {"@length": 0.004367, "@source": "node32", "@target": "node34", "@id": "edge33", "@about": "#edge33"}, {"@length": 0.001139, "@source": "node27", "@target": "node35", "@id": "edge34", "@about": "#edge34"}, {"@length": 0.002507, "@source": "node35", "@target": "node36", "@id": "edge35", "@about": "#edge35"}, {"@length": 0.007327, "@source": "node36", "@target": "node37", "@id": "edge36", "@about": "#edge36"}, {"@length": 0.002302, "@source": "node36", "@target": "node38", "@id": "edge37", "@about": "#edge37"}, {"@length": 0.005025, "@source": "node38", "@target": "node39", "@id": "edge38", "@about": "#edge38"}, {"@length": 0.005025, "@source": "node38", "@target": "node40", "@id": "edge39", "@about": "#edge39"}, {"@length": 0.000858, "@source": "node35", "@target": "node41", "@id": "edge40", "@about": "#edge40"}, {"@length": 0.001346, "@source": "node41", "@target": "node42", "@id": "edge41", "@about": "#edge41"}, {"@length": 0.000771, "@source": "node42", "@target": "node43", "@id": "edge42", "@about": "#edge42"}, {"@length": 0.006859, "@source": "node43", "@target": "node44", "@id": "edge43", "@about": "#edge43"}, {"@length": 0.006859, "@source": "node43", "@target": "node45", "@id": "edge44", "@about": "#edge44"}, {"@length": 1.2e-05, "@source": "node42", "@target": "node46", "@id": "edge45", "@about": "#edge45"}, {"@length": 0.007617, "@source": "node46", "@target": "node47", "@id": "edge46", "@about": "#edge46"}, {"@length": 0.005092, "@source": "node46", "@target": "node48", "@id": "edge47", "@about": "#edge47"}, {"@length": 0.002526, "@source": "node48", "@target": "node49", "@id": "edge48", "@about": "#edge48"}, {"@length": 0.002526, "@source": "node48", "@target": "node50", "@id": "edge49", "@about": "#edge49"}, {"@length": 0.001063, "@source": "node41", "@target": "node51", "@id": "edge50", "@about": "#edge50"}, {"@length": 0.004776, "@source": "node51", "@target": "node52", "@id": "edge51", "@about": "#edge51"}, {"@length": 0.003137, "@source": "node52", "@target": "node53", "@id": "edge52", "@about": "#edge52"}, {"@length": 0.002728, "@source": "node52", "@target": "node54", "@id": "edge53", "@about": "#edge53"}, {"@length": 0.000409, "@source": "node54", "@target": "node55", "@id": "edge54", "@about": "#edge54"}, {"@length": 0.000409, "@source": "node54", "@target": "node56", "@id": "edge55", "@about": "#edge55"}, {"@length": 0.001614, "@source": "node51", "@target": "node57", "@id": "edge56", "@about": "#edge56"}, {"@length": 0.006299, "@source": "node57", "@target": "node58", "@id": "edge57", "@about": "#edge57"}, {"@length": 0.002166, "@source": "node57", "@target": "node59", "@id": "edge58", "@about": "#edge58"}, {"@length": 0.004132, "@source": "node59", "@target": "node60", "@id": "edge59", "@about": "#edge59"}, {"@length": 0.000915, "@source": "node59", "@target": "node61", "@id": "edge60", "@about": "#edge60"}, {"@length": 0.003217, "@source": "node61", "@target": "node62", "@id": "edge61", "@about": "#edge61"}, {"@length": 0.000819, "@source": "node61", "@target": "node63", "@id": "edge62", "@about": "#edge62"}, {"@length": 0.002398, "@source": "node63", "@target": "node64", "@id": "edge63", "@about": "#edge63"}, {"@length": 0.000556, "@source": "node63", "@target": "node65", "@id": "edge64", "@about": "#edge64"}, {"@length": 0.001842, "@source": "node65", "@target": "node66", "@id": "edge65", "@about": "#edge65"}, {"@length": 0.001842, "@source": "node65", "@target": "node67", "@id": "edge66", "@about": "#edge66"}, {"@length": 0.003725, "@source": "node3", "@target": "node4", "@id": "edge3", "@about": "#edge3"}, {"@length": 0.026564, "@source": "node4", "@target": "node5", "@id": "edge4", "@about": "#edge4"}, {"@length": 0.0042, "@source": "node4", "@target": "node6", "@id": "edge5", "@about": "#edge5"}, {"@length": 0.022364, "@source": "node6", "@target": "node7", "@id": "edge6", "@about": "#edge6"}, {"@length": 0.008029, "@source": "node6", "@target": "node8", "@id": "edge7", "@about": "#edge7"}, {"@length": 0.014335, "@source": "node8", "@target": "node9", "@id": "edge8", "@about": "#edge8"}, {"@length": 0.000409, "@source": "node8", "@target": "node10", "@id": "edge9", "@about": "#edge9"}, {"@length": 0.003381, "@source": "node10", "@target": "node11", "@id": "edge10", "@about": "#edge10"}, {"@length": 0.010544, "@source": "node11", "@target": "node12", "@id": "edge11", "@about": "#edge11"}, {"@length": 0.001899, "@source": "node11", "@target": "node13", "@id": "edge12", "@about": "#edge12"}, {"@length": 0.008645, "@source": "node13", "@target": "node14", "@id": "edge13", "@about": "#edge13"}, {"@length": 0.002017, "@source": "node13", "@target": "node15", "@id": "edge14", "@about": "#edge14"}, {"@length": 0.006628, "@source": "node15", "@target": "node16", "@id": "edge15", "@about": "#edge15"}, {"@length": 0.006628, "@source": "node15", "@target": "node17", "@id": "edge16", "@about": "#edge16"}, {"@length": 0.001635, "@source": "node10", "@target": "node18", "@id": "edge17", "@about": "#edge17"}, {"@length": 0.001814, "@source": "node18", "@target": "node19", "@id": "edge18", "@about": "#edge18"}, {"@length": 0.010476, "@source": "node19", "@target": "node20", "@id": "edge19", "@about": "#edge19"}, {"@length": 0.010476, "@source": "node19", "@target": "node21", "@id": "edge20", "@about": "#edge20"}, {"@length": 0.001813, "@source": "node18", "@target": "node22", "@id": "edge21", "@about": "#edge21"}, {"@length": 0.010477, "@source": "node22", "@target": "node23", "@id": "edge22", "@about": "#edge22"}, {"@length": 0.000128, "@source": "node22", "@target": "node24", "@id": "edge23", "@about": "#edge23"}, {"@length": 0.010349, "@source": "node24", "@target": "node25", "@id": "edge24", "@about": "#edge24"}, {"@length": 0.010349, "@source": "node24", "@target": "node26", "@id": "edge25", "@about": "#edge25"}], "@id": "tree1", "@about": "#tree1", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthDescription", "@datatype": "xsd:string", "$": "coalescent units"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthMode", "@datatype": "xsd:string", "$": "ot:other"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthTimeUnit", "@datatype": "xsd:string", "$": "Myr"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:curatedType", "@datatype": "xsd:string", "$": "Bayesian inference "}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:inGroupClade", "@datatype": "xsd:string", "$": "node3"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:nodeLabelMode", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:nodeLabelTimeUnit", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:outGroupEdge", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:specifiedRoot", "@datatype": "xsd:string", "$": "node1"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:unrootedTree", "@datatype": "xsd:boolean", "$": false}]}], "@about": "#trees1"}, "meta": [{"agent": [{"@description": "Open Tree NexSON validation", "@id": "peyotl-validator", "@name": "api.opentreeoflife.org/validate", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": [], "otherProperty": [{"name": "pythonVersion", "value": "2.7.9"}, {"name": "pythonImplementation", "value": "CPython"}]}, "@about": "#peyotl-validator"}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0", "@about": "#opentree-curation-webapp"}], "@xsi:type": "nex:LiteralMeta", "@property": "ot:agents"}, {"annotation": [{"@dateCreated": "2015-05-21T17:20:51.170Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"searchContext": {"$": "Birds"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}]}, "useFuzzyMatching": false}, "refersTo": {"@top": {"$": "meta"}}}], "@about": "#otu-mapping-hints"}, {"@dateCreated": "2015-05-21T17:20:51.170Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": [{"@filename": "PASTED.tre", "@size": 2198, "@type": "newick", "@url": "/curator/download/supporting_files.doc.baa3f53e422592c8.5041535445442e747265.tre", "description": {"$": "Source data for tree(s) 'tree1'"}, "sourceForTree": [{"$": "tree1"}]}]}}, "refersTo": {"@top": {"$": "meta"}}}], "@about": "#supporting-files-metadata"}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}], "@about": "#peyotl-validator-event"}], "@xsi:type": "nex:LiteralMeta", "@property": "ot:annotationEvents"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:candidateTreeForSynthesis", "@datatype": "xsd:string", "$": "tree1"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:comment", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:curatorName", "@datatype": "xsd:string", "$": "Joseph W. Brown"}, {"@href": "", "@xsi:type": "nex:ResourceMeta", "@rel": "ot:dataDeposit"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:focalClade", "@datatype": "xsd:int", "$": 112946}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:focalCladeOTTTaxonName", "@datatype": "xsd:string", "$": "Charadrius"}, {"message": [], "@xsi:type": "nex:LiteralMeta", "@property": "ot:messages"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:notIntendedForSynthesis", "@datatype": "xsd:boolean", "$": false}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:studyId", "@datatype": "xsd:string", "$": "ot_289"}, {"@href": "http://dx.doi.org/10.1016/j.ympev.2015.04.010", "@xsi:type": "nex:ResourceMeta", "@rel": "ot:studyPublication"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:studyPublicationReference", "@datatype": "xsd:string", "$": "Dos Remedios, Natalie, Patricia L.M. Lee, Terry Burke, Tam\u00e1s Sz\u00e9kely, Clemens K\u00fcpper. 2015. North or south? Phylogenetic and biogeographic origins of a globally distributed avian clade. Molecular Phylogenetics and Evolution 89:151-159."}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:studyYear", "@datatype": "xsd:int", "$": 2015}]}}, "branch2sha": {"master": "7a486baf17f28360e5b100094e86d95ecc5c82bf"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "fb04a23243e1552c93154c5e51f7bbd152f05558", "author_name": "Joseph W. Brown", "author_email": "ANONYMOUS", "date": "Thu, 3 Sep 2015 14:08:58 +0000", "date_ISO_8601": "2015-09-03 14:08:58 +0000", "relative_date": "11 years ago", "message_subject": "focal clade", "message_body": "(Update Study #ot_289 via OpenTree API)"}, {"id": "fad5b808ab06ed6486a5c3ccca3c9939010a09cb", "author_name": "Joseph W. Brown", "author_email": "ANONYMOUS", "date": "Thu, 21 May 2015 17:36:37 +0000", "date_ISO_8601": "2015-05-21 17:36:37 +0000", "relative_date": "11 years ago", "message_subject": "tree metadata", "message_body": "(Update Study #ot_289 via OpenTree API)"}, {"id": "7240f43def6b1d0bf47f5693d8bdba434b72ba97", "author_name": "Joseph W. Brown", "author_email": "ANONYMOUS", "date": "Thu, 21 May 2015 17:33:59 +0000", "date_ISO_8601": "2015-05-21 17:33:59 +0000", "relative_date": "11 years ago", "message_subject": "map taxa", "message_body": "(Update Study #ot_289 via OpenTree API)"}, {"id": "a2fc0ab91e95b110a4e1a4947645535e7b361bd1", "author_name": "Joseph W. Brown", "author_email": "ANONYMOUS", "date": "Thu, 21 May 2015 17:28:03 +0000", "date_ISO_8601": "2015-05-21 17:28:03 +0000", "relative_date": "11 years ago", "message_subject": "upload tree", "message_body": "(Update Study #ot_289 via OpenTree API)"}, {"id": "ecf97c5c80283bd09d9476156a56c62ed3b67ae1", "author_name": "Joseph W. Brown", "author_email": "ANONYMOUS", "date": "Thu, 21 May 2015 17:22:04 +0000", "date_ISO_8601": "2015-05-21 17:22:04 +0000", "relative_date": "11 years ago", "message_subject": "init", "message_body": "(Update Study #ot_289 via OpenTree API)"}, {"id": "50b4fa03d19e2efcbad9b0e39a8f36915184404b", "author_name": "Joseph W. Brown", "author_email": "ANONYMOUS", "date": "Thu, 21 May 2015 17:20:49 +0000", "date_ISO_8601": "2015-05-21 17:20:49 +0000", "relative_date": "11 years ago", "message_subject": "Update Study #ot_289 via OpenTree API"}]}