{"sha": "c33806c9ee11db205ee8c02a42e31b1c3128e299", "data": {"nexml": {"@about": "#study", "@generator": "Open Tree API", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xhtml": "http://www.w3.org/1999/xhtml/vocab#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "Open Tree NexSON validation", "@id": "peyotl-validator", "@name": "api.opentreeoflife.org/validate", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": [], "otherProperty": [{"name": "pythonVersion", "value": "3.10.12"}, {"name": "pythonImplementation", "value": "CPython"}]}}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0"}]}, "^ot:annotationEvents": {"annotation": [{"@dateCreated": "2025-09-03T02:11:46.337Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"autoAcceptExactMatches": true, "searchContext": {"$": "Insects"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}]}, "useFuzzyMatching": false}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2025-09-03T02:11:46.336Z", "@description": "Describes external namesets merged into this study", "@id": "merged-namesets-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "MERGED_NAMESET_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"namesets": {"nameset": []}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2025-09-03T02:11:46.336Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": [{"@filename": "MaddisonPorch2021Tasmanitachoides.nwk", "@size": 408, "@type": "newick", "@url": "/curator/download/supporting_files.doc.97512ca36640137e.4d61646469736f6e506f726368323032315461736d616e69746163686f696465732e6e776b.nwk", "description": {"$": "Source data for tree(s) 'tree1'"}, "sourceForTree": [{"$": "tree1"}]}, {"@filename": "image.png", "@size": 698, "@type": "", "@url": "/curator/supporting_files/download/supporting_files.doc.b0703919ffa9dd4b.696d6167652e706e67.png", "description": {"$": ""}, "sourceForTree": []}, {"@filename": "image.png", "@size": 2094, "@type": "", "@url": "/curator/supporting_files/download/supporting_files.doc.af79ef1bcc3226b4.696d6167652e706e67.png", "description": {"$": ""}, "sourceForTree": []}, {"@filename": "image.png", "@size": 2094, "@type": "", "@url": "/curator/supporting_files/download/supporting_files.doc.84e9a45306a67418.696d6167652e706e67.png", "description": {"$": ""}, "sourceForTree": []}]}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu5", "otu6"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["highestMintedElementIDs"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:branchLengthTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit", "^ot:reasonsToExcludeFromSynthesis"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:ottId"], "refersTo": {"@top": "otus", "@idref": ["otu5", "otu6"], "@otusID": "otus1", "@otuID": ["otu5", "otu6"]}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": [], "^ot:comment": "", "^ot:curatorName": ["dchesters"], "^ot:dataDeposit": {"@href": ""}, "^ot:focalClade": 456212, "^ot:focalCladeOTTTaxonName": "Tasmanitachoides", "^ot:otusElementOrder": ["otus1"], "^ot:studyId": "ot_2890", "^ot:studyPublication": {"@href": "https://doi.org/10.3897/zookeys.1044.62253"}, "^ot:studyPublicationReference": "Maddison, D. R., & Porch, N. (2021). A preliminary phylogeny and review of the genus Tasmanitachoides, with descriptions of two new species (Coleoptera, Carabidae, Bembidarenini). ZooKeys, 1044, 153\u2013196. https://doi.org/10.3897/zookeys.1044.62253\n", "^ot:studyYear": 2021, "^ot:tag": [], "^ot:treesElementOrder": ["trees1"], "^xhtml:license": {"@href": "https://creativecommons.org/licenses/by/3.0/", "@name": "CC-BY 3.0"}, "highestMintedElementIDs": {"agent": 0, "annotation": 0, "edge": 28, "message": 0, "node": 29, "otu": 15, "otus": 2, "tree": 1, "trees": 2}, "otusById": {"otus1": {"otuById": {"otu1": {"^ot:originalLabel": "Bembidarenas reicheellum", "^ot:ottId": 206580, "^ot:ottTaxonName": "Bembidarenas reicheellum"}, "otu10": {"^ot:originalLabel": "Tasmanitachoides leai", "^ot:ottId": 3422359, "^ot:ottTaxonName": "Tasmanitachoides leai"}, "otu11": {"^ot:originalLabel": "Tasmanitachoides rufescens", "^ot:ottId": 3422356, "^ot:ottTaxonName": "Tasmanitachoides rufescens"}, "otu12": {"^ot:originalLabel": "Tasmanitachoides maior", "^ot:ottId": 3422360, "^ot:ottTaxonName": "Tasmanitachoides maior"}, "otu13": {"^ot:originalLabel": "Tasmanitachoides fitzroyi", "^ot:ottId": 456222, "^ot:ottTaxonName": "Tasmanitachoides fitzroyi"}, "otu14": {"^ot:originalLabel": "Tasmanitachoides murrumbidgensis", "^ot:ottId": 3422350, "^ot:ottTaxonName": "Tasmanitachoides murrumbidgensis"}, "otu15": {"^ot:originalLabel": "Tasmanitachoides bicolor", "^ot:ottId": 3422352, "^ot:ottTaxonName": "Tasmanitachoides bicolor"}, "otu2": {"^ot:originalLabel": "Tasmanitachoides kingi", "^ot:ottId": 3422363, "^ot:ottTaxonName": "Tasmanitachoides kingi"}, "otu3": {"^ot:originalLabel": "Tasmanitachoides angulicollis", "^ot:ottId": 3422361, "^ot:ottTaxonName": "Tasmanitachoides angulicollis"}, "otu4": {"^ot:originalLabel": "Tasmanitachoides wilsoni", "^ot:ottId": 3422364, "^ot:ottTaxonName": "Tasmanitachoides wilsoni"}, "otu5": {"^ot:originalLabel": "Tasmanitachoides baehri"}, "otu6": {"^ot:originalLabel": "Tasmanitachoides erwini"}, "otu7": {"^ot:originalLabel": "Tasmanitachoides lutus", "^ot:ottId": 3422366, "^ot:ottTaxonName": "Tasmanitachoides lutus"}, "otu8": {"^ot:originalLabel": "Tasmanitachoides gerdi", "^ot:ottId": 6228578, "^ot:ottTaxonName": "Tasmanitachoides gerdi"}, "otu9": {"^ot:originalLabel": "Tasmanitachoides hobarti", "^ot:ottId": 3422358, "^ot:ottTaxonName": "Tasmanitachoides hobarti"}}}}, "treesById": {"trees1": {"@otus": "otus1", "^ot:treeElementOrder": ["tree1"], "treeById": {"tree1": {"@label": "Fig. 5, ML", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:undefined", "^ot:curatedType": "Maximum likelihood ", "^ot:inGroupClade": "node3", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:reasonsToExcludeFromSynthesis": [], "^ot:rootNodeId": "node1", "^ot:specifiedRoot": "node1", "^ot:tag": [], "^ot:unrootedTree": false, "edgeBySourceId": {"node1": {"edge1": {"@source": "node1", "@target": "node2"}, "edge2": {"@source": "node1", "@target": "node3"}}, "node11": {"edge11": {"@source": "node11", "@target": "node12"}, "edge12": {"@source": "node11", "@target": "node13"}}, "node13": {"edge13": {"@source": "node13", "@target": "node14"}, "edge14": {"@source": "node13", "@target": "node15"}}, "node15": {"edge15": {"@source": "node15", "@target": "node16"}, "edge16": {"@source": "node15", "@target": "node17"}}, "node17": {"edge17": {"@source": "node17", "@target": "node18"}, "edge18": {"@source": "node17", "@target": "node19"}}, "node19": {"edge19": {"@source": "node19", "@target": "node20"}, "edge22": {"@source": "node19", "@target": "node23"}}, "node20": {"edge20": {"@source": "node20", "@target": "node21"}, "edge21": {"@source": "node20", "@target": "node22"}}, "node23": {"edge23": {"@source": "node23", "@target": "node24"}, "edge26": {"@source": "node23", "@target": "node27"}}, "node24": {"edge24": {"@source": "node24", "@target": "node25"}, "edge25": {"@source": "node24", "@target": "node26"}}, "node27": {"edge27": {"@source": "node27", "@target": "node28"}, "edge28": {"@source": "node27", "@target": "node29"}}, "node3": {"edge10": {"@source": "node3", "@target": "node11"}, "edge3": {"@source": "node3", "@target": "node4"}}, "node4": {"edge4": {"@source": "node4", "@target": "node5"}, "edge7": {"@source": "node4", "@target": "node8"}}, "node5": {"edge5": {"@source": "node5", "@target": "node6"}, "edge6": {"@source": "node5", "@target": "node7"}}, "node8": {"edge8": {"@source": "node8", "@target": "node9"}, "edge9": {"@source": "node8", "@target": "node10"}}}, "nodeById": {"node1": {"@root": true}, "node10": {"@otu": "otu5"}, "node11": {}, "node12": {"@otu": "otu6"}, "node13": {}, "node14": {"@otu": "otu7"}, "node15": {}, "node16": {"@otu": "otu8"}, "node17": {}, "node18": {"@otu": "otu9"}, "node19": {}, "node2": {"@otu": "otu1"}, "node20": {}, "node21": {"@otu": "otu10"}, "node22": {"@otu": "otu11"}, "node23": {}, "node24": {}, "node25": {"@otu": "otu12"}, "node26": {"@otu": "otu13"}, "node27": {}, "node28": {"@otu": "otu14"}, "node29": {"@otu": "otu15"}, "node3": {}, "node4": {}, "node5": {}, "node6": {"@otu": "otu2"}, "node7": {"@otu": "otu3"}, "node8": {}, "node9": {"@otu": "otu4"}}}}}}}}, "branch2sha": {"master": "c33806c9ee11db205ee8c02a42e31b1c3128e299"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "c241caecb12bfe1f5a2931651ae8b07ac38b0b69", "author_name": "dchesters", "author_email": "dc0357548934@live.co.uk", "date": "Wed, 3 Sep 2025 02:13:55 +0000", "date_ISO_8601": "2025-09-03 02:13:55 +0000", "relative_date": "8 months ago", "message_subject": "Initial commit Maddison and Porch 2021", "message_body": "MaddisonPorch2021Tasmanitachoides.nwk\n\n(Update document 'ot_2890' via OpenTree API)"}, {"id": "d18813685b012f611439b9c2c9550deddc273bf2", "author_name": "dchesters", "author_email": "dc0357548934@live.co.uk", "date": "Wed, 3 Sep 2025 02:11:43 +0000", "date_ISO_8601": "2025-09-03 02:11:43 +0000", "relative_date": "8 months ago", "message_subject": "Update document 'ot_2890' via OpenTree API"}]}