{"sha": "c33806c9ee11db205ee8c02a42e31b1c3128e299", "data": {"nexml": {"@about": "#study", "@generator": "Open Tree API", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xhtml": "http://www.w3.org/1999/xhtml/vocab#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "Open Tree NexSON validation", "@id": "peyotl-validator", "@name": "api.opentreeoflife.org/validate", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": [], "otherProperty": [{"name": "pythonVersion", "value": "3.10.12"}, {"name": "pythonImplementation", "value": "CPython"}]}}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0"}]}, "^ot:annotationEvents": {"annotation": [{"@dateCreated": "2025-10-01T00:28:33.607Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"autoAcceptExactMatches": true, "searchContext": {"$": "Insects"}, "substitutions": {"substitution": [{"@active": true, "@valid": true, "new": {"$": ""}, "old": {"$": " sp"}}]}, "useFuzzyMatching": false}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2025-10-01T00:28:33.607Z", "@description": "Describes external namesets merged into this study", "@id": "merged-namesets-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "MERGED_NAMESET_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"namesets": {"nameset": []}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2025-10-01T00:28:33.607Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": [{"@filename": "Parker2016Pselaphinae.nwk", "@size": 1615, "@type": "newick", "@url": "/curator/download/supporting_files.doc.8871cde130b2aa90.5061726b6572323031365073656c617068696e61652e6e776b.nwk", "description": {"$": "Source data for tree(s) 'tree1'"}, "sourceForTree": [{"$": "tree1"}]}]}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu28", "otu38", "otu9"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["highestMintedElementIDs"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:branchLengthTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit", "^ot:reasonsToExcludeFromSynthesis"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["rootedge"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:ottId"], "refersTo": {"@top": "otus", "@idref": ["otu28", "otu38", "otu9"], "@otusID": "otus1", "@otuID": ["otu28", "otu38", "otu9"]}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": [], "^ot:comment": "", "^ot:curatorName": ["dchesters"], "^ot:dataDeposit": {"@href": ""}, "^ot:focalClade": 431234, "^ot:focalCladeOTTTaxonName": "Staphylinidae", "^ot:otusElementOrder": ["otus1"], "^ot:studyId": "ot_3008", "^ot:studyPublication": {"@href": "https://doi.org/10.1111/syen.12173"}, "^ot:studyPublicationReference": "PARKER, J. (2016). Emergence of a superradiation: pselaphine rove beetles in mid\u2010Cretaceous amber from Myanmar and their evolutionary implications. Systematic Entomology, 41(3), 541\u2013566. Portico. https://doi.org/10.1111/syen.12173\n", "^ot:studyYear": 2016, "^ot:tag": [], "^ot:treesElementOrder": ["trees1"], "highestMintedElementIDs": {"agent": 0, "annotation": 0, "edge": 78, "message": 0, "node": 79, "otu": 40, "otus": 2, "tree": 1, "trees": 2}, "otusById": {"otus1": {"otuById": {"otu1": {"^ot:originalLabel": "Dasycerus carolinensis", "^ot:ottId": 1030268, "^ot:ottTaxonName": "Dasycerus carolinensis"}, "otu10": {"^ot:originalLabel": "Rhytus sp", "^ot:ottId": 4649369, "^ot:ottTaxonName": "Rhytus"}, "otu11": {"^ot:originalLabel": "Curculionellus sp", "^ot:ottId": 3349336, "^ot:ottTaxonName": "Curculionellus"}, "otu12": {"^ot:originalLabel": "Pselaphogenius sp", "^ot:ottId": 3348778, "^ot:ottTaxonName": "Pselaphogenius"}, "otu13": {"^ot:originalLabel": "Pselaphus heisei", "^ot:ottId": 3349025, "^ot:ottTaxonName": "Pselaphus heisei"}, "otu14": {"^ot:originalLabel": "Pyxidicerina sp", "^ot:ottId": 5825320, "^ot:ottTaxonName": "Pyxidicerina"}, "otu15": {"^ot:originalLabel": "Zethopsus sp", "^ot:ottId": 3349079, "^ot:ottTaxonName": "Zethopsus"}, "otu16": {"^ot:originalLabel": "Lasinus mikado", "^ot:ottId": 5833835, "^ot:ottTaxonName": "Lasinus mikado"}, "otu17": {"^ot:originalLabel": "Odontalgus sp", "^ot:ottId": 4596489, "^ot:ottTaxonName": "Odontalgus"}, "otu18": {"^ot:originalLabel": "Apharinodes papageno", "^ot:ottId": 5939000, "^ot:ottTaxonName": "Apharinodes papageno"}, "otu19": {"^ot:originalLabel": "Ctenisodes piceus", "^ot:ottId": 4596561, "^ot:ottTaxonName": "Ctenisodes piceus"}, "otu2": {"^ot:originalLabel": "Sonoma sp", "^ot:ottId": 4597069, "^ot:ottTaxonName": "Sonoma"}, "otu20": {"^ot:originalLabel": "Tmesiphorus costalis", "^ot:ottId": 3350452, "^ot:ottTaxonName": "Tmesiphorus costalis"}, "otu21": {"^ot:originalLabel": "Boreotethys arctopteryx", "^ot:ottId": 6259552, "^ot:ottTaxonName": "Boreotethys arctopteryx"}, "otu22": {"^ot:originalLabel": "Boreotethys grimaldii", "^ot:ottId": 6259553, "^ot:ottTaxonName": "Boreotethys grimaldii"}, "otu23": {"^ot:originalLabel": "Bryaxis curtisii", "^ot:ottId": 43383, "^ot:ottTaxonName": "Bryaxis curtisii"}, "otu24": {"^ot:originalLabel": "Tychobythinus sp", "^ot:ottId": 3348703, "^ot:ottTaxonName": "Tychobythinus"}, "otu25": {"^ot:originalLabel": "Oropodes chumash", "^ot:ottId": 5833795, "^ot:ottTaxonName": "Oropodes chumash"}, "otu26": {"^ot:originalLabel": "Decarthron sp", "^ot:ottId": 4595613, "^ot:ottTaxonName": "Decarthron"}, "otu27": {"^ot:originalLabel": "Reichenbachia juncorum", "^ot:ottId": 3349893, "^ot:ottTaxonName": "Reichenbachia juncorum"}, "otu28": {"^ot:originalLabel": "Rybaxis laminata"}, "otu29": {"^ot:originalLabel": "Eutyphlus schmitti", "^ot:ottId": 3349964, "^ot:ottTaxonName": "Eutyphlus schmitti"}, "otu3": {"^ot:originalLabel": "Megarafonus ventralis", "^ot:ottId": 4595718, "^ot:ottTaxonName": "Megarafonus ventralis"}, "otu30": {"^ot:originalLabel": "Melba thoracica", "^ot:ottId": 4597046, "^ot:ottTaxonName": "Melba thoracica"}, "otu31": {"^ot:originalLabel": "Protrichonyx rafifrons", "^ot:ottId": 6260511, "^ot:ottTaxonName": "Protrichonyx rafifrons"}, "otu32": {"^ot:originalLabel": "Euplectus piceus", "^ot:ottId": 1091627, "^ot:ottTaxonName": "Euplectus piceus"}, "otu33": {"^ot:originalLabel": "Leptoplectus pertenuis", "^ot:ottId": 4595573, "^ot:ottTaxonName": "Leptoplectus pertenuis"}, "otu34": {"^ot:originalLabel": "Batriscenaulax modestus", "^ot:ottId": 5939001, "^ot:ottTaxonName": "Batriscenaulax modestus"}, "otu35": {"^ot:originalLabel": "Batrisodes lineaticollis", "^ot:ottId": 3348191, "^ot:ottTaxonName": "Batrisodes lineaticollis"}, "otu36": {"^ot:originalLabel": "Conoplectus canaliculatus", "^ot:ottId": 476553, "^ot:ottTaxonName": "Conoplectus canaliculatus"}, "otu37": {"^ot:originalLabel": "Rhexius sp", "^ot:ottId": 4595877, "^ot:ottTaxonName": "Rhexius"}, "otu38": {"^ot:originalLabel": "Metopiasini sp"}, "otu39": {"^ot:originalLabel": "Endytocera sp", "^ot:ottId": 4596319, "^ot:ottTaxonName": "Endytocera"}, "otu4": {"^ot:originalLabel": "Faronus parallelus", "^ot:ottId": 3350918, "^ot:ottTaxonName": "Faronus parallelus"}, "otu40": {"^ot:originalLabel": "Jubus sp", "^ot:ottId": 4597207, "^ot:ottTaxonName": "Jubus"}, "otu5": {"^ot:originalLabel": "Sagola sp", "^ot:ottId": 3350571, "^ot:ottTaxonName": "Sagola"}, "otu6": {"^ot:originalLabel": "Harmophorus sp", "^ot:ottId": 4596463, "^ot:ottTaxonName": "Harmophorus"}, "otu7": {"^ot:originalLabel": "Adranes taylori", "^ot:ottId": 4595994, "^ot:ottTaxonName": "Adranes taylori"}, "otu8": {"^ot:originalLabel": "Claviger testaceus", "^ot:ottId": 5042754, "^ot:ottTaxonName": "Claviger testaceus"}, "otu9": {"^ot:originalLabel": "Caccoplectus orbus"}}}}, "treesById": {"trees1": {"@otus": "otus1", "^ot:treeElementOrder": ["tree1"], "treeById": {"tree1": {"@label": "syen12173-sup-0003-supp-file-s1.nex", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:undefined", "^ot:curatedType": "Bayesian inference ", "^ot:inGroupClade": "node3", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:reasonsToExcludeFromSynthesis": [], "^ot:rootNodeId": "node1", "^ot:specifiedRoot": "node1", "^ot:tag": [], "^ot:unrootedTree": false, "edgeBySourceId": {"node1": {"edge1": {"@length": 0.336046, "@source": "node1", "@target": "node2"}, "edge2": {"@length": 0.139277, "@source": "node1", "@target": "node3"}}, "node11": {"edge11": {"@length": 0.338457, "@source": "node11", "@target": "node12"}, "edge26": {"@length": 0.165035, "@source": "node11", "@target": "node27"}}, "node12": {"edge12": {"@length": 0.878627, "@source": "node12", "@target": "node13"}, "edge13": {"@length": 0.36187, "@source": "node12", "@target": "node14"}}, "node14": {"edge14": {"@length": 0.058285, "@source": "node14", "@target": "node15"}, "edge17": {"@length": 0.045872, "@source": "node14", "@target": "node18"}}, "node15": {"edge15": {"@length": 0.011668, "@source": "node15", "@target": "node16"}, "edge16": {"@length": 0.010352, "@source": "node15", "@target": "node17"}}, "node18": {"edge18": {"@length": 0.026509, "@source": "node18", "@target": "node19"}, "edge21": {"@length": 0.028735, "@source": "node18", "@target": "node22"}}, "node19": {"edge19": {"@length": 0.038957, "@source": "node19", "@target": "node20"}, "edge20": {"@length": 0.066761, "@source": "node19", "@target": "node21"}}, "node22": {"edge22": {"@length": 0.027428, "@source": "node22", "@target": "node23"}, "edge23": {"@length": 0.031738, "@source": "node22", "@target": "node24"}}, "node24": {"edge24": {"@length": 0.005968, "@source": "node24", "@target": "node25"}, "edge25": {"@length": 0.00621, "@source": "node24", "@target": "node26"}}, "node27": {"edge27": {"@length": 0.220955, "@source": "node27", "@target": "node28"}, "edge40": {"@length": 0.207769, "@source": "node27", "@target": "node41"}}, "node28": {"edge28": {"@length": 0.428605, "@source": "node28", "@target": "node29"}, "edge31": {"@length": 0.175143, "@source": "node28", "@target": "node32"}}, "node29": {"edge29": {"@length": 0.629259, "@source": "node29", "@target": "node30"}, "edge30": {"@length": 0.616542, "@source": "node29", "@target": "node31"}}, "node3": {"edge10": {"@length": 0.190569, "@source": "node3", "@target": "node11"}, "edge3": {"@length": 0.09018, "@source": "node3", "@target": "node4"}}, "node32": {"edge32": {"@length": 0.032511, "@source": "node32", "@target": "node33"}, "edge35": {"@length": 0.034086, "@source": "node32", "@target": "node36"}}, "node33": {"edge33": {"@length": 0.065016, "@source": "node33", "@target": "node34"}, "edge34": {"@length": 0.12144, "@source": "node33", "@target": "node35"}}, "node36": {"edge36": {"@length": 0.098811, "@source": "node36", "@target": "node37"}, "edge37": {"@length": 0.024829, "@source": "node36", "@target": "node38"}}, "node38": {"edge38": {"@length": 0.041361, "@source": "node38", "@target": "node39"}, "edge39": {"@length": 0.018305, "@source": "node38", "@target": "node40"}}, "node4": {"edge4": {"@length": 0.17254, "@source": "node4", "@target": "node5"}, "edge5": {"@length": 0.05837, "@source": "node4", "@target": "node6"}}, "node41": {"edge41": {"@length": 0.155397, "@source": "node41", "@target": "node42"}, "edge56": {"@length": 0.049008, "@source": "node41", "@target": "node57"}}, "node42": {"edge42": {"@length": 0.161222, "@source": "node42", "@target": "node43"}, "edge49": {"@length": 0.159799, "@source": "node42", "@target": "node50"}}, "node43": {"edge43": {"@length": 0.161748, "@source": "node43", "@target": "node44"}, "edge44": {"@length": 0.141313, "@source": "node43", "@target": "node45"}}, "node45": {"edge45": {"@length": 0.165369, "@source": "node45", "@target": "node46"}, "edge46": {"@length": 0.154954, "@source": "node45", "@target": "node47"}}, "node47": {"edge47": {"@length": 0.040095, "@source": "node47", "@target": "node48"}, "edge48": {"@length": 0.033233, "@source": "node47", "@target": "node49"}}, "node50": {"edge50": {"@length": 0.395022, "@source": "node50", "@target": "node51"}, "edge51": {"@length": 0.191046, "@source": "node50", "@target": "node52"}}, "node52": {"edge52": {"@length": 0.244907, "@source": "node52", "@target": "node53"}, "edge53": {"@length": 0.130639, "@source": "node52", "@target": "node54"}}, "node54": {"edge54": {"@length": 0.06413, "@source": "node54", "@target": "node55"}, "edge55": {"@length": 0.06668, "@source": "node54", "@target": "node56"}}, "node57": {"edge57": {"@length": 0.098432, "@source": "node57", "@target": "node58"}, "edge66": {"@length": 0.203435, "@source": "node57", "@target": "node67"}}, "node58": {"edge58": {"@length": 0.235807, "@source": "node58", "@target": "node59"}, "edge61": {"@length": 0.12179, "@source": "node58", "@target": "node62"}}, "node59": {"edge59": {"@length": 0.680871, "@source": "node59", "@target": "node60"}, "edge60": {"@length": 0.591093, "@source": "node59", "@target": "node61"}}, "node6": {"edge6": {"@length": 0.06999, "@source": "node6", "@target": "node7"}, "edge7": {"@length": 0.031644, "@source": "node6", "@target": "node8"}}, "node62": {"edge62": {"@length": 0.072614, "@source": "node62", "@target": "node63"}, "edge63": {"@length": 0.147853, "@source": "node62", "@target": "node64"}}, "node64": {"edge64": {"@length": 0.034916, "@source": "node64", "@target": "node65"}, "edge65": {"@length": 0.0205, "@source": "node64", "@target": "node66"}}, "node67": {"edge67": {"@length": 0.307672, "@source": "node67", "@target": "node68"}, "edge70": {"@length": 0.179253, "@source": "node67", "@target": "node71"}}, "node68": {"edge68": {"@length": 0.194362, "@source": "node68", "@target": "node69"}, "edge69": {"@length": 0.178425, "@source": "node68", "@target": "node70"}}, "node71": {"edge71": {"@length": 0.234626, "@source": "node71", "@target": "node72"}, "edge74": {"@length": 0.151287, "@source": "node71", "@target": "node75"}}, "node72": {"edge72": {"@length": 0.170041, "@source": "node72", "@target": "node73"}, "edge73": {"@length": 0.247347, "@source": "node72", "@target": "node74"}}, "node75": {"edge75": {"@length": 0.359483, "@source": "node75", "@target": "node76"}, "edge76": {"@length": 0.163952, "@source": "node75", "@target": "node77"}}, "node77": {"edge77": {"@length": 0.201833, "@source": "node77", "@target": "node78"}, "edge78": {"@length": 0.247668, "@source": "node77", "@target": "node79"}}, "node8": {"edge8": {"@length": 0.019025, "@source": "node8", "@target": "node9"}, "edge9": {"@length": 0.010123, "@source": "node8", "@target": "node10"}}}, "nodeById": {"node1": {"@root": true}, "node10": {"@otu": "otu5"}, "node11": {}, "node12": {}, "node13": {"@otu": "otu6"}, "node14": {}, "node15": {}, "node16": {"@otu": "otu7"}, "node17": {"@otu": "otu8"}, "node18": {}, "node19": {}, "node2": {"@otu": "otu1"}, "node20": {"@otu": "otu9"}, "node21": {"@otu": "otu10"}, "node22": {}, "node23": {"@otu": "otu11"}, "node24": {}, "node25": {"@otu": "otu12"}, "node26": {"@otu": "otu13"}, "node27": {}, "node28": {}, "node29": {}, "node3": {}, "node30": {"@otu": "otu14"}, "node31": {"@otu": "otu15"}, "node32": {}, "node33": {}, "node34": {"@otu": "otu16"}, "node35": {"@otu": "otu17"}, "node36": {}, "node37": {"@otu": "otu18"}, "node38": {}, "node39": {"@otu": "otu19"}, "node4": {}, "node40": {"@otu": "otu20"}, "node41": {}, "node42": {}, "node43": {}, "node44": {"@otu": "otu21"}, "node45": {}, "node46": {"@otu": "otu22"}, "node47": {}, "node48": {"@otu": "otu23"}, "node49": {"@otu": "otu24"}, "node5": {"@otu": "otu2"}, "node50": {}, "node51": {"@otu": "otu25"}, "node52": {}, "node53": {"@otu": "otu26"}, "node54": {}, "node55": {"@otu": "otu27"}, "node56": {"@otu": "otu28"}, "node57": {}, "node58": {}, "node59": {}, "node6": {}, "node60": {"@otu": "otu29"}, "node61": {"@otu": "otu30"}, "node62": {}, "node63": {"@otu": "otu31"}, "node64": {}, "node65": {"@otu": "otu32"}, "node66": {"@otu": "otu33"}, "node67": {}, "node68": {}, "node69": {"@otu": "otu34"}, "node7": {"@otu": "otu3"}, "node70": {"@otu": "otu35"}, "node71": {}, "node72": {}, "node73": {"@otu": "otu36"}, "node74": {"@otu": "otu37"}, "node75": {}, "node76": {"@otu": "otu38"}, "node77": {}, "node78": {"@otu": "otu39"}, "node79": {"@otu": "otu40"}, "node8": {}, "node9": {"@otu": "otu4"}}, "rootedge": [{"@id": "enode1", "@length": "0.168574", "@target": "node1"}]}}}}}}, "branch2sha": {"master": "c33806c9ee11db205ee8c02a42e31b1c3128e299"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "21cb9d371f2bed01729fc6cb65e6684b8e95735e", "author_name": "dchesters", "author_email": "dc0357548934@live.co.uk", "date": "Wed, 1 Oct 2025 00:30:50 +0000", "date_ISO_8601": "2025-10-01 00:30:50 +0000", "relative_date": "7 months ago", "message_subject": "Init Parker 2016", "message_body": "Parker2016Pselaphinae.nwk\nAuthor provides matrix and MrBayes commands in Nexus file, reanalysis output has some topology differences where support is lower, higher supported regions match. Oriented as per figure and reduced outgroup to single terminal.\n\n(Update document 'ot_3008' via OpenTree API)"}, {"id": "c73f1576ce7a61834678dc132820c77a7ad80155", "author_name": "dchesters", "author_email": "dc0357548934@live.co.uk", "date": "Wed, 1 Oct 2025 00:28:30 +0000", "date_ISO_8601": "2025-10-01 00:28:30 +0000", "relative_date": "7 months ago", "message_subject": "Update document 'ot_3008' via OpenTree API"}]}