{"sha": "2aa180baef3c5e313da1e7f09c83ce2c0467b457", "data": {"nexml": {"@about": "#study", "@generator": "Open Tree API", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xhtml": "http://www.w3.org/1999/xhtml/vocab#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "Open Tree NexSON validation", "@id": "peyotl-validator", "@name": "api.opentreeoflife.org/validate", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": [], "otherProperty": [{"name": "pythonVersion", "value": "3.10.12"}, {"name": "pythonImplementation", "value": "CPython"}]}}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0"}]}, "^ot:annotationEvents": {"annotation": [{"@dateCreated": "2025-10-05T00:00:55.456Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"autoAcceptExactMatches": true, "searchContext": {"$": "Insects"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}]}, "useFuzzyMatching": false}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2025-10-05T00:00:55.456Z", "@description": "Describes external namesets merged into this study", "@id": "merged-namesets-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "MERGED_NAMESET_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"namesets": {"nameset": []}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2025-10-05T00:00:55.456Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": [{"@filename": "DarwellRivers2016Tegeticula.nwk", "@size": 428, "@type": "newick", "@url": "/curator/download/supporting_files.doc.a478c2e1d5df8721.44617277656c6c5269766572733230313654656765746963756c612e6e776b.nwk", "description": {"$": "Source data for tree(s) 'tree1'"}, "sourceForTree": [{"$": "tree1"}]}]}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["highestMintedElementIDs"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:branchLengthTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit", "^ot:reasonsToExcludeFromSynthesis"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": [], "^ot:comment": "", "^ot:curatorName": ["dchesters"], "^ot:dataDeposit": {"@href": ""}, "^ot:focalClade": 407136, "^ot:focalCladeOTTTaxonName": "Tegeticula", "^ot:otusElementOrder": ["otus1"], "^ot:studyId": "ot_3010", "^ot:studyPublication": {"@href": "https://doi.org/10.1111/syen.12185"}, "^ot:studyPublicationReference": "DARWELL, C. T., RIVERS, D. M., & ALTHOFF, D. M. (2016). RAD\u2010seq phylogenomics recovers a well\u2010resolved phylogeny of a rapid radiation of mutualistic and antagonistic yucca moths. Systematic Entomology, 41(3), 672\u2013682. Portico. https://doi.org/10.1111/syen.12185\n", "^ot:studyYear": 2016, "^ot:tag": [], "^ot:treesElementOrder": ["trees1"], "highestMintedElementIDs": {"agent": 0, "annotation": 0, "edge": 34, "message": 0, "node": 35, "otu": 18, "otus": 2, "tree": 1, "trees": 2}, "otusById": {"otus1": {"otuById": {"otu1": {"^ot:originalLabel": "Tegeticula maculata", "^ot:ottId": 407138, "^ot:ottTaxonName": "Tegeticula maculata"}, "otu10": {"^ot:originalLabel": "Tegeticula rostratella", "^ot:ottId": 807284, "^ot:ottTaxonName": "Tegeticula rostratella"}, "otu11": {"^ot:originalLabel": "Tegeticula yuccasella", "^ot:ottId": 254003, "^ot:ottTaxonName": "Tegeticula yuccasella"}, "otu12": {"^ot:originalLabel": "Tegeticula altiplanella", "^ot:ottId": 807283, "^ot:ottTaxonName": "Tegeticula altiplanella"}, "otu13": {"^ot:originalLabel": "Tegeticula baccatella", "^ot:ottId": 131143, "^ot:ottTaxonName": "Tegeticula baccatella"}, "otu14": {"^ot:originalLabel": "Tegeticula corruptrix", "^ot:ottId": 131145, "^ot:ottTaxonName": "Tegeticula corruptrix"}, "otu15": {"^ot:originalLabel": "Tegeticula superficiella", "^ot:ottId": 131144, "^ot:ottTaxonName": "Tegeticula superficiella"}, "otu16": {"^ot:originalLabel": "Tegeticula elatella", "^ot:ottId": 400676, "^ot:ottTaxonName": "Tegeticula elatella"}, "otu17": {"^ot:originalLabel": "Tegeticula cassandra", "^ot:ottId": 807291, "^ot:ottTaxonName": "Tegeticula cassandra"}, "otu18": {"^ot:originalLabel": "Tegeticula intermedia", "^ot:ottId": 1039352, "^ot:ottTaxonName": "Tegeticula intermedia"}, "otu2": {"^ot:originalLabel": "Tegeticula antithetica", "^ot:ottId": 24084, "^ot:ottTaxonName": "Tegeticula antithetica"}, "otu3": {"^ot:originalLabel": "Tegeticula synthetica", "^ot:ottId": 686193, "^ot:ottTaxonName": "Tegeticula synthetica"}, "otu4": {"^ot:originalLabel": "Tegeticula mojavella", "^ot:ottId": 400673, "^ot:ottTaxonName": "Tegeticula mojavella"}, "otu5": {"^ot:originalLabel": "Tegeticula maderae", "^ot:ottId": 807292, "^ot:ottTaxonName": "Tegeticula maderae"}, "otu6": {"^ot:originalLabel": "Tegeticula tehuacana", "^ot:ottId": 211238, "^ot:ottTaxonName": "Tegeticula tehuacana"}, "otu7": {"^ot:originalLabel": "Tegeticula carnerosanella", "^ot:ottId": 807293, "^ot:ottTaxonName": "Tegeticula carnerosanella"}, "otu8": {"^ot:originalLabel": "Tegeticula tambasi", "^ot:ottId": 211237, "^ot:ottTaxonName": "Tegeticula tambasi"}, "otu9": {"^ot:originalLabel": "Tegeticula mexicana", "^ot:ottId": 211235, "^ot:ottTaxonName": "Tegeticula mexicana"}}}}, "treesById": {"trees1": {"@otus": "otus1", "^ot:treeElementOrder": ["tree1"], "treeById": {"tree1": {"@label": "Fig. 3, BI", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:undefined", "^ot:curatedType": "Bayesian inference ", "^ot:inGroupClade": "node3", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:reasonsToExcludeFromSynthesis": [], "^ot:rootNodeId": "node1", "^ot:specifiedRoot": "node1", "^ot:tag": [], "^ot:unrootedTree": false, "edgeBySourceId": {"node1": {"edge1": {"@source": "node1", "@target": "node2"}, "edge2": {"@source": "node1", "@target": "node3"}}, "node10": {"edge10": {"@source": "node10", "@target": "node11"}, "edge11": {"@source": "node10", "@target": "node12"}}, "node12": {"edge12": {"@source": "node12", "@target": "node13"}, "edge13": {"@source": "node12", "@target": "node14"}}, "node14": {"edge14": {"@source": "node14", "@target": "node15"}, "edge15": {"@source": "node14", "@target": "node16"}}, "node16": {"edge16": {"@source": "node16", "@target": "node17"}, "edge17": {"@source": "node16", "@target": "node18"}}, "node19": {"edge19": {"@source": "node19", "@target": "node20"}, "edge26": {"@source": "node19", "@target": "node27"}}, "node20": {"edge20": {"@source": "node20", "@target": "node21"}, "edge21": {"@source": "node20", "@target": "node22"}}, "node22": {"edge22": {"@source": "node22", "@target": "node23"}, "edge23": {"@source": "node22", "@target": "node24"}}, "node24": {"edge24": {"@source": "node24", "@target": "node25"}, "edge25": {"@source": "node24", "@target": "node26"}}, "node27": {"edge27": {"@source": "node27", "@target": "node28"}, "edge30": {"@source": "node27", "@target": "node31"}}, "node28": {"edge28": {"@source": "node28", "@target": "node29"}, "edge29": {"@source": "node28", "@target": "node30"}}, "node3": {"edge3": {"@source": "node3", "@target": "node4"}, "edge6": {"@source": "node3", "@target": "node7"}}, "node31": {"edge31": {"@source": "node31", "@target": "node32"}, "edge32": {"@source": "node31", "@target": "node33"}}, "node33": {"edge33": {"@source": "node33", "@target": "node34"}, "edge34": {"@source": "node33", "@target": "node35"}}, "node4": {"edge4": {"@source": "node4", "@target": "node5"}, "edge5": {"@source": "node4", "@target": "node6"}}, "node7": {"edge18": {"@source": "node7", "@target": "node19"}, "edge7": {"@source": "node7", "@target": "node8"}}, "node8": {"edge8": {"@source": "node8", "@target": "node9"}, "edge9": {"@source": "node8", "@target": "node10"}}}, "nodeById": {"node1": {"@root": true}, "node10": {}, "node11": {"@otu": "otu5"}, "node12": {}, "node13": {"@otu": "otu6"}, "node14": {}, "node15": {"@otu": "otu7"}, "node16": {}, "node17": {"@otu": "otu8"}, "node18": {"@otu": "otu9"}, "node19": {}, "node2": {"@otu": "otu1"}, "node20": {}, "node21": {"@otu": "otu10"}, "node22": {}, "node23": {"@otu": "otu11"}, "node24": {}, "node25": {"@otu": "otu12"}, "node26": {"@otu": "otu13"}, "node27": {}, "node28": {}, "node29": {"@otu": "otu14"}, "node3": {}, "node30": {"@otu": "otu15"}, "node31": {}, "node32": {"@otu": "otu16"}, "node33": {}, "node34": {"@otu": "otu17"}, "node35": {"@otu": "otu18"}, "node4": {}, "node5": {"@otu": "otu2"}, "node6": {"@otu": "otu3"}, "node7": {}, "node8": {}, "node9": {"@otu": "otu4"}}}}}}}}, "branch2sha": {"master": "2aa180baef3c5e313da1e7f09c83ce2c0467b457"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "9264ac5988a41a0e42a48765308e0ea4e4c1d36e", "author_name": "dchesters", "author_email": "dc0357548934@live.co.uk", "date": "Sun, 5 Oct 2025 00:04:10 +0000", "date_ISO_8601": "2025-10-05 00:04:10 +0000", "relative_date": "7 months ago", "message_subject": "Init Darwell et al 2016", "message_body": "DarwellRivers2016Tegeticula.nwk\n\n(Update document 'ot_3010' via OpenTree API)"}, {"id": "254e14909259c04c83218514a2bb2a45e2e7611d", "author_name": "dchesters", "author_email": "dc0357548934@live.co.uk", "date": "Sun, 5 Oct 2025 00:00:51 +0000", "date_ISO_8601": "2025-10-05 00:00:51 +0000", "relative_date": "7 months ago", "message_subject": "Update document 'ot_3010' via OpenTree API"}]}