{"sha": "c33806c9ee11db205ee8c02a42e31b1c3128e299", "data": {"nexml": {"@about": "#study", "@generator": "Open Tree API", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xhtml": "http://www.w3.org/1999/xhtml/vocab#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "Open Tree NexSON validation", "@id": "peyotl-validator", "@name": "api.opentreeoflife.org/validate", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": [], "otherProperty": [{"name": "pythonVersion", "value": "3.10.12"}, {"name": "pythonImplementation", "value": "CPython"}]}}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0"}]}, "^ot:annotationEvents": {"annotation": [{"@dateCreated": "2025-10-15T22:25:16.029Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"autoAcceptExactMatches": true, "searchContext": {"$": "Insects"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}]}, "useFuzzyMatching": false}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2025-10-15T22:25:16.029Z", "@description": "Describes external namesets merged into this study", "@id": "merged-namesets-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "MERGED_NAMESET_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"namesets": {"nameset": []}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2025-10-15T22:25:16.029Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": [{"@filename": "SouzaFrench2025Onciderini.nwk", "@size": 4114, "@type": "newick", "@url": "/curator/download/supporting_files.doc.be886aeeff30864f.536f757a614672656e6368323032354f6e6369646572696e692e6e776b.nwk", "description": {"$": "Source data for tree(s) 'tree1'"}, "sourceForTree": [{"$": "tree1"}]}, {"@filename": "image.png", "@size": 6667, "@type": "", "@url": "/curator/supporting_files/download/supporting_files.doc.84c61e269789bfc3.696d6167652e706e67.png", "description": {"$": ""}, "sourceForTree": []}]}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu55", "otu60", "otu67", "otu9"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["highestMintedElementIDs"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:branchLengthTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit", "^ot:reasonsToExcludeFromSynthesis"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["rootedge"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:ottId"], "refersTo": {"@top": "otus", "@idref": ["otu55", "otu60", "otu67", "otu9"], "@otusID": "otus1", "@otuID": ["otu55", "otu60", "otu67", "otu9"]}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": [], "^ot:comment": "", "^ot:curatorName": ["dchesters"], "^ot:dataDeposit": {"@href": "https://doi.org/10.5281/zenodo.13905554"}, "^ot:focalClade": 968359, "^ot:focalCladeOTTTaxonName": "Cerambycidae", "^ot:otusElementOrder": ["otus1"], "^ot:studyId": "ot_3023", "^ot:studyPublication": {"@href": "https://doi.org/10.1111/syen.12660"}, "^ot:studyPublicationReference": "Souza, D. de S., French, R. L. K., J\u00fanior, J. O. S., Nearns, E. H., Marinoni, L., Swift, I. P., Miller, K. B., Sperling, F. A. H., & Monn\u00e9, M. L. (2024). Cutting the sap: First molecular phylogeny of twig\u2010girdler longhorn beetles (Coleoptera: Cerambycidae: Lamiinae: Onciderini) suggests shifts in host plant attack behaviours contributed to morphological evolution. Systematic Entomology, 50(2), 369\u2013386. Portico. https://doi.org/10.1111/syen.12660\n", "^ot:studyYear": 2025, "^ot:tag": [], "^ot:treesElementOrder": ["trees1"], "^xhtml:license": {"@href": "https://creativecommons.org/licenses/by/3.0/", "@name": "CC-BY 3.0"}, "highestMintedElementIDs": {"agent": 0, "annotation": 0, "edge": 132, "message": 0, "node": 133, "otu": 67, "otus": 2, "tree": 1, "trees": 2}, "otusById": {"otus1": {"otuById": {"otu1": {"^ot:originalLabel": "Aconopteroides laevipennis", "^ot:ottId": 3407520, "^ot:ottTaxonName": "Aconopteroides laevipennis"}, "otu10": {"^ot:originalLabel": "Onocephala obliquata", "^ot:ottId": 3391012, "^ot:ottTaxonName": "Onocephala obliquata"}, "otu11": {"^ot:originalLabel": "Onocephala rugicollis", "^ot:ottId": 3389684, "^ot:ottTaxonName": "Onocephala rugicollis"}, "otu12": {"^ot:originalLabel": "Onocephala lacordairei", "^ot:ottId": 3389685, "^ot:ottTaxonName": "Onocephala lacordairei"}, "otu13": {"^ot:originalLabel": "Onocephala suturalis", "^ot:ottId": 3403431, "^ot:ottTaxonName": "Onocephala suturalis"}, "otu14": {"^ot:originalLabel": "Lingafelteria giuglarisi", "^ot:ottId": 6232226, "^ot:ottTaxonName": "Lingafelteria giuglarisi"}, "otu15": {"^ot:originalLabel": "Tulcus lycimnius", "^ot:ottId": 3396187, "^ot:ottTaxonName": "Tulcus lycimnius"}, "otu16": {"^ot:originalLabel": "Jamesia globifera", "^ot:ottId": 3396122, "^ot:ottTaxonName": "Jamesia globifera"}, "otu17": {"^ot:originalLabel": "Hypselomus cristatus", "^ot:ottId": 3394185, "^ot:ottTaxonName": "Hypselomus cristatus"}, "otu18": {"^ot:originalLabel": "Jamesia ericksoni", "^ot:ottId": 3380292, "^ot:ottTaxonName": "Jamesia ericksoni"}, "otu19": {"^ot:originalLabel": "Jamesia papulenta", "^ot:ottId": 3396115, "^ot:ottTaxonName": "Jamesia papulenta"}, "otu2": {"^ot:originalLabel": "Cordites pubescens", "^ot:ottId": 3399874, "^ot:ottTaxonName": "Cordites pubescens"}, "otu20": {"^ot:originalLabel": "Neodillonia albisparsa", "^ot:ottId": 3382037, "^ot:ottTaxonName": "Neodillonia albisparsa"}, "otu21": {"^ot:originalLabel": "Lydipta conspersa", "^ot:ottId": 3407389, "^ot:ottTaxonName": "Lydipta conspersa"}, "otu22": {"^ot:originalLabel": "Midamiella hecabe", "^ot:ottId": 4604521, "^ot:ottTaxonName": "Midamiella hecabe"}, "otu23": {"^ot:originalLabel": "Furona degenera", "^ot:ottId": 3391837, "^ot:ottTaxonName": "Furona degenera"}, "otu24": {"^ot:originalLabel": "Euthima rodens", "^ot:ottId": 3380760, "^ot:ottTaxonName": "Euthima rodens"}, "otu25": {"^ot:originalLabel": "Venustus zeteki", "^ot:ottId": 3380996, "^ot:ottTaxonName": "Venustus zeteki"}, "otu26": {"^ot:originalLabel": "Hypsioma amydon", "^ot:ottId": 3403370, "^ot:ottTaxonName": "Hypsioma amydon"}, "otu27": {"^ot:originalLabel": "Hypsioma gibbera", "^ot:ottId": 3407291, "^ot:ottTaxonName": "Hypsioma gibbera"}, "otu28": {"^ot:originalLabel": "Cipriscola fasciata", "^ot:ottId": 3396037, "^ot:ottTaxonName": "Cipriscola fasciata"}, "otu29": {"^ot:originalLabel": "Hypsioma hezia", "^ot:ottId": 3392661, "^ot:ottTaxonName": "Hypsioma hezia"}, "otu3": {"^ot:originalLabel": "Hesycha bimaculata", "^ot:ottId": 3396923, "^ot:ottTaxonName": "Hesycha bimaculata"}, "otu30": {"^ot:originalLabel": "Trestonia assulina", "^ot:ottId": 3392768, "^ot:ottTaxonName": "Trestonia assulina"}, "otu31": {"^ot:originalLabel": "Trestonia frontalis", "^ot:ottId": 3392767, "^ot:ottTaxonName": "Trestonia frontalis"}, "otu32": {"^ot:originalLabel": "Lochmaeocles tessellatus", "^ot:ottId": 3395696, "^ot:ottTaxonName": "Lochmaeocles tessellatus"}, "otu33": {"^ot:originalLabel": "Lochmaeocles batesi", "^ot:ottId": 3386555, "^ot:ottTaxonName": "Lochmaeocles batesi"}, "otu34": {"^ot:originalLabel": "Lochmaeocles consobrinus", "^ot:ottId": 3382642, "^ot:ottTaxonName": "Lochmaeocles consobrinus"}, "otu35": {"^ot:originalLabel": "Lochmaeocles sparsus", "^ot:ottId": 3400514, "^ot:ottTaxonName": "Lochmaeocles sparsus"}, "otu36": {"^ot:originalLabel": "Tybalmia caeca", "^ot:ottId": 3388900, "^ot:ottTaxonName": "Tybalmia caeca"}, "otu37": {"^ot:originalLabel": "Tybalmia pupillata", "^ot:ottId": 3394310, "^ot:ottTaxonName": "Tybalmia pupillata"}, "otu38": {"^ot:originalLabel": "Hesychotypa subfasciata", "^ot:ottId": 3403884, "^ot:ottTaxonName": "Hesychotypa subfasciata"}, "otu39": {"^ot:originalLabel": "Hesychotypa heraldica", "^ot:ottId": 3388339, "^ot:ottTaxonName": "Hesychotypa heraldica"}, "otu4": {"^ot:originalLabel": "Sternycha approximata", "^ot:ottId": 3378884, "^ot:ottTaxonName": "Sternycha approximata"}, "otu40": {"^ot:originalLabel": "Hesychotypa turbida", "^ot:ottId": 3389489, "^ot:ottTaxonName": "Hesychotypa turbida"}, "otu41": {"^ot:originalLabel": "Trachysomus cavigibba", "^ot:ottId": 3399717, "^ot:ottTaxonName": "Trachysomus cavigibba"}, "otu42": {"^ot:originalLabel": "Cylicasta nysa", "^ot:ottId": 3397705, "^ot:ottTaxonName": "Cylicasta nysa"}, "otu43": {"^ot:originalLabel": "Cacostola volvula", "^ot:ottId": 3396733, "^ot:ottTaxonName": "Cacostola volvula"}, "otu44": {"^ot:originalLabel": "Ecthoea quadricornis", "^ot:ottId": 7731832, "^ot:ottTaxonName": "Ecthoea quadricornis"}, "otu45": {"^ot:originalLabel": "Oncideres humeralis", "^ot:ottId": 3365403, "^ot:ottTaxonName": "Oncideres humeralis"}, "otu46": {"^ot:originalLabel": "Oncideres cervina", "^ot:ottId": 3365433, "^ot:ottTaxonName": "Oncideres cervina"}, "otu47": {"^ot:originalLabel": "Psyllotoxus griseocinctus", "^ot:ottId": 3397431, "^ot:ottTaxonName": "Psyllotoxus griseocinctus"}, "otu48": {"^ot:originalLabel": "Oncideres ulcerosa", "^ot:ottId": 3365428, "^ot:ottTaxonName": "Oncideres ulcerosa"}, "otu49": {"^ot:originalLabel": "Oncideres ilaire", "^ot:ottId": 3365452, "^ot:ottTaxonName": "Oncideres ilaire"}, "otu5": {"^ot:originalLabel": "Sulpitus lilla", "^ot:ottId": 3382464, "^ot:ottTaxonName": "Sulpitus lilla"}, "otu50": {"^ot:originalLabel": "Oncideres rubra", "^ot:ottId": 3365376, "^ot:ottTaxonName": "Oncideres rubra"}, "otu51": {"^ot:originalLabel": "Oncideres captiosa", "^ot:ottId": 3365447, "^ot:ottTaxonName": "Oncideres captiosa"}, "otu52": {"^ot:originalLabel": "Oncideres digna", "^ot:ottId": 3365416, "^ot:ottTaxonName": "Oncideres digna"}, "otu53": {"^ot:originalLabel": "Oncideres fulvostillata", "^ot:ottId": 3365395, "^ot:ottTaxonName": "Oncideres fulvostillata"}, "otu54": {"^ot:originalLabel": "Oncideres philosipes", "^ot:ottId": 3365426, "^ot:ottTaxonName": "Oncideres philosipes"}, "otu55": {"^ot:originalLabel": "Periergates kenjii"}, "otu56": {"^ot:originalLabel": "Oncideres albomarginata", "^ot:ottId": 731728, "^ot:ottTaxonName": "Oncideres albomarginata"}, "otu57": {"^ot:originalLabel": "Taricanus truquii", "^ot:ottId": 3382271, "^ot:ottTaxonName": "Taricanus truquii"}, "otu58": {"^ot:originalLabel": "Oncideres senilis", "^ot:ottId": 3365380, "^ot:ottTaxonName": "Oncideres senilis"}, "otu59": {"^ot:originalLabel": "Oncideres punctata", "^ot:ottId": 3365443, "^ot:ottTaxonName": "Oncideres punctata"}, "otu6": {"^ot:originalLabel": "Eudesmus grisescens", "^ot:ottId": 3394157, "^ot:ottTaxonName": "Eudesmus grisescens"}, "otu60": {"^ot:originalLabel": "Oncideres putator"}, "otu61": {"^ot:originalLabel": "Oncideres repandator", "^ot:ottId": 3365366, "^ot:ottTaxonName": "Oncideres repandator"}, "otu62": {"^ot:originalLabel": "Oncideres cumdisci", "^ot:ottId": 3365381, "^ot:ottTaxonName": "Oncideres cumdisci"}, "otu63": {"^ot:originalLabel": "Oncideres fisheri", "^ot:ottId": 3365437, "^ot:ottTaxonName": "Oncideres fisheri"}, "otu64": {"^ot:originalLabel": "Oncideres guttulata", "^ot:ottId": 3365378, "^ot:ottTaxonName": "Oncideres guttulata"}, "otu65": {"^ot:originalLabel": "Oncideres polychroma", "^ot:ottId": 3365390, "^ot:ottTaxonName": "Oncideres polychroma"}, "otu66": {"^ot:originalLabel": "Oncideres impluviata", "^ot:ottId": 3365368, "^ot:ottTaxonName": "Oncideres impluviata"}, "otu67": {"^ot:originalLabel": "Oncideres saga"}, "otu7": {"^ot:originalLabel": "Ischiocentra hebes", "^ot:ottId": 3393925, "^ot:ottTaxonName": "Ischiocentra hebes"}, "otu8": {"^ot:originalLabel": "Ischiocentra quadrisignata", "^ot:ottId": 3390019, "^ot:ottTaxonName": "Ischiocentra quadrisignata"}, "otu9": {"^ot:originalLabel": "Stethoperma candezei"}}}}, "treesById": {"trees1": {"@otus": "otus1", "^ot:treeElementOrder": ["tree1"], "treeById": {"tree1": {"@label": "RAxML_bestTree.Onciderini_concat_matrix_ML", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:undefined", "^ot:curatedType": "Maximum likelihood ", "^ot:inGroupClade": "node3", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:reasonsToExcludeFromSynthesis": [], "^ot:rootNodeId": "node1", "^ot:specifiedRoot": "node1", "^ot:tag": [], "^ot:unrootedTree": false, "edgeBySourceId": {"node1": {"edge1": {"@length": 0.754451, "@source": "node1", "@target": "node2"}, "edge2": {"@length": 0.514092, "@source": "node1", "@target": "node3"}}, "node10": {"edge10": {"@length": 0.244961, "@source": "node10", "@target": "node11"}, "edge11": {"@length": 0.110313, "@source": "node10", "@target": "node12"}}, "node101": {"edge101": {"@length": 0.023063, "@source": "node101", "@target": "node102"}, "edge108": {"@length": 0.008, "@source": "node101", "@target": "node109"}}, "node102": {"edge102": {"@length": 0.096303, "@source": "node102", "@target": "node103"}, "edge105": {"@length": 0.124099, "@source": "node102", "@target": "node106"}}, "node103": {"edge103": {"@length": 0.049857, "@source": "node103", "@target": "node104"}, "edge104": {"@length": 0.098357, "@source": "node103", "@target": "node105"}}, "node106": {"edge106": {"@length": 0.11554, "@source": "node106", "@target": "node107"}, "edge107": {"@length": 0.083888, "@source": "node106", "@target": "node108"}}, "node109": {"edge109": {"@length": 0.065665, "@source": "node109", "@target": "node110"}, "edge120": {"@length": 0.00576, "@source": "node109", "@target": "node121"}}, "node110": {"edge110": {"@length": 0.1904, "@source": "node110", "@target": "node111"}, "edge111": {"@length": 0.04247, "@source": "node110", "@target": "node112"}}, "node112": {"edge112": {"@length": 0.23478, "@source": "node112", "@target": "node113"}, "edge113": {"@length": 0.011447, "@source": "node112", "@target": "node114"}}, "node114": {"edge114": {"@length": 0.255201, "@source": "node114", "@target": "node115"}, "edge115": {"@length": 0.121874, "@source": "node114", "@target": "node116"}}, "node116": {"edge116": {"@length": 0.141458, "@source": "node116", "@target": "node117"}, "edge117": {"@length": 0.084507, "@source": "node116", "@target": "node118"}}, "node118": {"edge118": {"@length": 0.05181, "@source": "node118", "@target": "node119"}, "edge119": {"@length": 0.020042, "@source": "node118", "@target": "node120"}}, "node121": {"edge121": {"@length": 0.043146, "@source": "node121", "@target": "node122"}, "edge126": {"@length": 0.037414, "@source": "node121", "@target": "node127"}}, "node122": {"edge122": {"@length": 0.235909, "@source": "node122", "@target": "node123"}, "edge123": {"@length": 0.130401, "@source": "node122", "@target": "node124"}}, "node124": {"edge124": {"@length": 0.043027, "@source": "node124", "@target": "node125"}, "edge125": {"@length": 0.031113, "@source": "node124", "@target": "node126"}}, "node127": {"edge127": {"@length": 0.100086, "@source": "node127", "@target": "node128"}, "edge130": {"@length": 0.030453, "@source": "node127", "@target": "node131"}}, "node128": {"edge128": {"@length": 0.030478, "@source": "node128", "@target": "node129"}, "edge129": {"@length": 0.027331, "@source": "node128", "@target": "node130"}}, "node13": {"edge13": {"@length": 0.348905, "@source": "node13", "@target": "node14"}, "edge14": {"@length": 0.080178, "@source": "node13", "@target": "node15"}}, "node131": {"edge131": {"@length": 0.059164, "@source": "node131", "@target": "node132"}, "edge132": {"@length": 0.076455, "@source": "node131", "@target": "node133"}}, "node15": {"edge15": {"@length": 0.302401, "@source": "node15", "@target": "node16"}, "edge16": {"@length": 0.155035, "@source": "node15", "@target": "node17"}}, "node18": {"edge18": {"@length": 0.200297, "@source": "node18", "@target": "node19"}, "edge27": {"@length": 0.021886, "@source": "node18", "@target": "node28"}}, "node19": {"edge19": {"@length": 0.09774, "@source": "node19", "@target": "node20"}, "edge20": {"@length": 0.007325, "@source": "node19", "@target": "node21"}}, "node21": {"edge21": {"@length": 0.072434, "@source": "node21", "@target": "node22"}, "edge24": {"@length": 0.048379, "@source": "node21", "@target": "node25"}}, "node22": {"edge22": {"@length": 0.01386, "@source": "node22", "@target": "node23"}, "edge23": {"@length": 0.031503, "@source": "node22", "@target": "node24"}}, "node25": {"edge25": {"@length": 0.034042, "@source": "node25", "@target": "node26"}, "edge26": {"@length": 0.106785, "@source": "node25", "@target": "node27"}}, "node28": {"edge28": {"@length": 0.044823, "@source": "node28", "@target": "node29"}, "edge31": {"@length": 0.063582, "@source": "node28", "@target": "node32"}}, "node29": {"edge29": {"@length": 0.290331, "@source": "node29", "@target": "node30"}, "edge30": {"@length": 0.317056, "@source": "node29", "@target": "node31"}}, "node3": {"edge3": {"@length": 0.008941, "@source": "node3", "@target": "node4"}, "edge58": {"@length": 0.098425, "@source": "node3", "@target": "node59"}}, "node32": {"edge32": {"@length": 0.153962, "@source": "node32", "@target": "node33"}, "edge39": {"@length": 0.027696, "@source": "node32", "@target": "node40"}}, "node33": {"edge33": {"@length": 0.184244, "@source": "node33", "@target": "node34"}, "edge34": {"@length": 0.091797, "@source": "node33", "@target": "node35"}}, "node35": {"edge35": {"@length": 0.164781, "@source": "node35", "@target": "node36"}, "edge36": {"@length": 0.08282, "@source": "node35", "@target": "node37"}}, "node37": {"edge37": {"@length": 0.026615, "@source": "node37", "@target": "node38"}, "edge38": {"@length": 0.001104, "@source": "node37", "@target": "node39"}}, "node4": {"edge17": {"@length": 0.044081, "@source": "node4", "@target": "node18"}, "edge4": {"@length": 0.058553, "@source": "node4", "@target": "node5"}}, "node40": {"edge40": {"@length": 0.116561, "@source": "node40", "@target": "node41"}, "edge41": {"@length": 0.005378, "@source": "node40", "@target": "node42"}}, "node42": {"edge42": {"@length": 0.336162, "@source": "node42", "@target": "node43"}, "edge43": {"@length": 0.029042, "@source": "node42", "@target": "node44"}}, "node44": {"edge44": {"@length": 0.193633, "@source": "node44", "@target": "node45"}, "edge45": {"@length": 0.035528, "@source": "node44", "@target": "node46"}}, "node46": {"edge46": {"@length": 0.059036, "@source": "node46", "@target": "node47"}, "edge51": {"@length": 0.054043, "@source": "node46", "@target": "node52"}}, "node47": {"edge47": {"@length": 0.2396, "@source": "node47", "@target": "node48"}, "edge48": {"@length": 0.022147, "@source": "node47", "@target": "node49"}}, "node49": {"edge49": {"@length": 0.189592, "@source": "node49", "@target": "node50"}, "edge50": {"@length": 0.35564, "@source": "node49", "@target": "node51"}}, "node5": {"edge5": {"@length": 0.024898, "@source": "node5", "@target": "node6"}, "edge8": {"@length": 0.117687, "@source": "node5", "@target": "node9"}}, "node52": {"edge52": {"@length": 0.27985, "@source": "node52", "@target": "node53"}, "edge53": {"@length": 0.060008, "@source": "node52", "@target": "node54"}}, "node54": {"edge54": {"@length": 0.117666, "@source": "node54", "@target": "node55"}, "edge55": {"@length": 0.012336, "@source": "node54", "@target": "node56"}}, "node56": {"edge56": {"@length": 0.246464, "@source": "node56", "@target": "node57"}, "edge57": {"@length": 0.148715, "@source": "node56", "@target": "node58"}}, "node59": {"edge59": {"@length": 0.069154, "@source": "node59", "@target": "node60"}, "edge80": {"@length": 0.045333, "@source": "node59", "@target": "node81"}}, "node6": {"edge6": {"@length": 0.25361, "@source": "node6", "@target": "node7"}, "edge7": {"@length": 0.202775, "@source": "node6", "@target": "node8"}}, "node60": {"edge60": {"@length": 0.400373, "@source": "node60", "@target": "node61"}, "edge63": {"@length": 0.207989, "@source": "node60", "@target": "node64"}}, "node61": {"edge61": {"@length": 0.349182, "@source": "node61", "@target": "node62"}, "edge62": {"@length": 0.371296, "@source": "node61", "@target": "node63"}}, "node64": {"edge64": {"@length": 0.111636, "@source": "node64", "@target": "node65"}, "edge71": {"@length": 0.027418, "@source": "node64", "@target": "node72"}}, "node65": {"edge65": {"@length": 0.171275, "@source": "node65", "@target": "node66"}, "edge66": {"@length": 0.056094, "@source": "node65", "@target": "node67"}}, "node67": {"edge67": {"@length": 0.14165, "@source": "node67", "@target": "node68"}, "edge68": {"@length": 0.044013, "@source": "node67", "@target": "node69"}}, "node69": {"edge69": {"@length": 0.056436, "@source": "node69", "@target": "node70"}, "edge70": {"@length": 0.124285, "@source": "node69", "@target": "node71"}}, "node72": {"edge72": {"@length": 0.118735, "@source": "node72", "@target": "node73"}, "edge75": {"@length": 0.090753, "@source": "node72", "@target": "node76"}}, "node73": {"edge73": {"@length": 0.055052, "@source": "node73", "@target": "node74"}, "edge74": {"@length": 0.264085, "@source": "node73", "@target": "node75"}}, "node76": {"edge76": {"@length": 0.08095, "@source": "node76", "@target": "node77"}, "edge77": {"@length": 0.096736, "@source": "node76", "@target": "node78"}}, "node78": {"edge78": {"@length": 0.142994, "@source": "node78", "@target": "node79"}, "edge79": {"@length": 0.228397, "@source": "node78", "@target": "node80"}}, "node81": {"edge81": {"@length": 0.376881, "@source": "node81", "@target": "node82"}, "edge82": {"@length": 0.030691, "@source": "node81", "@target": "node83"}}, "node83": {"edge83": {"@length": 0.031452, "@source": "node83", "@target": "node84"}, "edge88": {"@length": 0.060342, "@source": "node83", "@target": "node89"}}, "node84": {"edge84": {"@length": 0.342484, "@source": "node84", "@target": "node85"}, "edge85": {"@length": 0.084903, "@source": "node84", "@target": "node86"}}, "node86": {"edge86": {"@length": 0.458566, "@source": "node86", "@target": "node87"}, "edge87": {"@length": 0.422291, "@source": "node86", "@target": "node88"}}, "node89": {"edge89": {"@length": 0.20045, "@source": "node89", "@target": "node90"}, "edge90": {"@length": 0.026538, "@source": "node89", "@target": "node91"}}, "node9": {"edge12": {"@length": 0.061008, "@source": "node9", "@target": "node13"}, "edge9": {"@length": 0.13757, "@source": "node9", "@target": "node10"}}, "node91": {"edge91": {"@length": 0.042847, "@source": "node91", "@target": "node92"}, "edge94": {"@length": 0.027134, "@source": "node91", "@target": "node95"}}, "node92": {"edge92": {"@length": 0.180587, "@source": "node92", "@target": "node93"}, "edge93": {"@length": 0.18016, "@source": "node92", "@target": "node94"}}, "node95": {"edge100": {"@length": 0.047089, "@source": "node95", "@target": "node101"}, "edge95": {"@length": 0.12132, "@source": "node95", "@target": "node96"}}, "node96": {"edge96": {"@length": 0.219966, "@source": "node96", "@target": "node97"}, "edge97": {"@length": 0.094436, "@source": "node96", "@target": "node98"}}, "node98": {"edge98": {"@length": 0.13614, "@source": "node98", "@target": "node99"}, "edge99": {"@length": 0.18277, "@source": "node98", "@target": "node100"}}}, "nodeById": {"node1": {"@root": true}, "node10": {}, "node100": {"@otu": "otu50"}, "node101": {}, "node102": {}, "node103": {}, "node104": {"@otu": "otu51"}, "node105": {"@otu": "otu52"}, "node106": {}, "node107": {"@otu": "otu53"}, "node108": {"@otu": "otu54"}, "node109": {}, "node11": {"@otu": "otu4"}, "node110": {}, "node111": {"@otu": "otu55"}, "node112": {}, "node113": {"@otu": "otu56"}, "node114": {}, "node115": {"@otu": "otu57"}, "node116": {}, "node117": {"@otu": "otu58"}, "node118": {}, "node119": {"@otu": "otu59"}, "node12": {"@otu": "otu5"}, "node120": {"@otu": "otu60"}, "node121": {}, "node122": {}, "node123": {"@otu": "otu61"}, "node124": {}, "node125": {"@otu": "otu62"}, "node126": {"@otu": "otu63"}, "node127": {}, "node128": {}, "node129": {"@otu": "otu64"}, "node13": {}, "node130": {"@otu": "otu65"}, "node131": {}, "node132": {"@otu": "otu66"}, "node133": {"@otu": "otu67"}, "node14": {"@otu": "otu6"}, "node15": {}, "node16": {"@otu": "otu7"}, "node17": {"@otu": "otu8"}, "node18": {}, "node19": {}, "node2": {"@otu": "otu1"}, "node20": {"@otu": "otu9"}, "node21": {}, "node22": {}, "node23": {"@otu": "otu10"}, "node24": {"@otu": "otu11"}, "node25": {}, "node26": {"@otu": "otu12"}, "node27": {"@otu": "otu13"}, "node28": {}, "node29": {}, "node3": {}, "node30": {"@otu": "otu14"}, "node31": {"@otu": "otu15"}, "node32": {}, "node33": {}, "node34": {"@otu": "otu16"}, "node35": {}, "node36": {"@otu": "otu17"}, "node37": {}, "node38": {"@otu": "otu18"}, "node39": {"@otu": "otu19"}, "node4": {}, "node40": {}, "node41": {"@otu": "otu20"}, "node42": {}, "node43": {"@otu": "otu21"}, "node44": {}, "node45": {"@otu": "otu22"}, "node46": {}, "node47": {}, "node48": {"@otu": "otu23"}, "node49": {}, "node5": {}, "node50": {"@otu": "otu24"}, "node51": {"@otu": "otu25"}, "node52": {}, "node53": {"@otu": "otu26"}, "node54": {}, "node55": {"@otu": "otu27"}, "node56": {}, "node57": {"@otu": "otu28"}, "node58": {"@otu": "otu29"}, "node59": {}, "node6": {}, "node60": {}, "node61": {}, "node62": {"@otu": "otu30"}, "node63": {"@otu": "otu31"}, "node64": {}, "node65": {}, "node66": {"@otu": "otu32"}, "node67": {}, "node68": {"@otu": "otu33"}, "node69": {}, "node7": {"@otu": "otu2"}, "node70": {"@otu": "otu34"}, "node71": {"@otu": "otu35"}, "node72": {}, "node73": {}, "node74": {"@otu": "otu36"}, "node75": {"@otu": "otu37"}, "node76": {}, "node77": {"@otu": "otu38"}, "node78": {}, "node79": {"@otu": "otu39"}, "node8": {"@otu": "otu3"}, "node80": {"@otu": "otu40"}, "node81": {}, "node82": {"@otu": "otu41"}, "node83": {}, "node84": {}, "node85": {"@otu": "otu42"}, "node86": {}, "node87": {"@otu": "otu43"}, "node88": {"@otu": "otu44"}, "node89": {}, "node9": {}, "node90": {"@otu": "otu45"}, "node91": {}, "node92": {}, "node93": {"@otu": "otu46"}, "node94": {"@otu": "otu47"}, "node95": {}, "node96": {}, "node97": {"@otu": "otu48"}, "node98": {}, "node99": {"@otu": "otu49"}}, "rootedge": [{"@id": "enode1", "@length": "0.12984", "@target": "node1"}]}}}}}}, "branch2sha": {"master": "c33806c9ee11db205ee8c02a42e31b1c3128e299"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "7581591ac409fd5ed56caff42871a0ef4b7abae2", "author_name": "dchesters", "author_email": "dc0357548934@live.co.uk", "date": "Wed, 15 Oct 2025 22:27:56 +0000", "date_ISO_8601": "2025-10-15 22:27:56 +0000", "relative_date": "6 months ago", "message_subject": "Init Souza, French et al 2025", "message_body": "SouzaFrench2025Onciderini.nwk\nAuthors preference appears to be (Fig. 2) Beast lognormal, unfortunately this is packaged as 594MB zip file in data supplement. So instead processed RaxML result. Rooted as per fig 2, removed all but one of outgroup. Minor edits.\n\n(Update document 'ot_3023' via OpenTree API)"}, {"id": "a0d7b6bc7d6e6580e24a3d7ad03bb07605ebcfff", "author_name": "dchesters", "author_email": "dc0357548934@live.co.uk", "date": "Wed, 15 Oct 2025 22:25:12 +0000", "date_ISO_8601": "2025-10-15 22:25:12 +0000", "relative_date": "6 months ago", "message_subject": "Update document 'ot_3023' via OpenTree API"}]}