pythonVersion 3.10.12 pythonImplementation CPython true Cnidarians [A-Z].* transK quek false Source data for tree(s) 'tree1' tree1 otu102 otu147 otu151 otu16 otu174 otu177 otu200 otu206 otu207 otu210 otu219 otu22 otu222 otu223 otu232 otu238 otu244 otu25 otu250 otu254 otu257 otu26 otu265 otu268 otu269 otu273 otu282 otu288 otu289 otu30 otu33 otu49 otu50 otu51 otu53 otu54 otu66 otu76 otu84 otu87 otu88 otu89 otu96 ^ot:comment highestMintedElementIDs ^ot:nodeLabelMode ^ot:nodeLabelTimeUnit ^ot:reasonsToExcludeFromSynthesis rootedge ^ot:ottId jdduke24 712383 Scleractinia ot_3066 Vaga, C. F., Quattrini, A. M., Galvão de Lossio e Seiblitz, I., Huang, D., Quek, Z. B. R., Stolarski, J., Cairns, S. D., & Kitahara, M. V. (2025). A global coral phylogeny reveals resilience and vulnerability through deep time. Nature. https://doi.org/10.1038/s41586-025-09615-6 2025 Acanthastrea echinata quek REL253 906674 Acanthastrea echinata Acropora tenuis ReFuGe 97331 Acropora tenuis Endopachys grayi LIB53 D4 682795 Endopachys grayi Eusmilia fastigiata ANT169 50367 Eusmilia fastigiata Faustinotrochus neocaledonensis CFV161 Favia fragum ANT161 992405 Favia fragum Favia gravida CV17 951822 Favia gravida Fimbriaphyllia ancora REL ReFuGe 313607 Euphyllia ancora Fimbriaphyllia divisa REL082 REL236 878033 Euphyllia divisa Flabellum alabastrum ANT96 3676189 Flabellum alabastrum Flabellum aotearoa IGS112 3676192 Flabellum aotearoa Flabellum apertum LIB4 CFV8 191132 Flabellum apertum Acropora valida quek REL499 447995 Acropora valida Flabellum flexuosum LIB15 CFV68 3676194 Flabellum flexuosum Flabellum hoffmeisteri LIB6 CFV28 3676242 Flabellum hoffmeisteri Flabellum impensum LIB12 CFV60 846477 Flabellum impensum Flabellum knoxi LIB8 CFV35 3676198 Flabellum knoxi Flabellum messum IGS121 3676252 Flabellum messum Fungia fungites REL067 906675 Fungia fungites Fungiacyathus Bat turbinolioides CFV118 313605 Fungiacyathus Fungiacyathus fragilis LIB29 CFV95 765443 Fungiacyathus fragilis Fungiacyathus paliferus C5 LIB51 3675640 Fungiacyathus paliferus Fungiacyathus sandoi CFV141 3675644 Fungiacyathus sandoi Agaricia lamarcki ANT164 452846 Agaricia lamarcki Fungiacyathus stephanus CFV142 765453 Fungiacyathus stephanus Fungiacyathus variegatus D2 LIB52 3675637 Fungiacyathus variegatus Galaxea astreata REL ReFuGe 267034 Galaxea astreata Galaxea fascicularis quek REL058 838109 Galaxea fascicularis Gardineria hawaiiensis CFV143 909021 Gardineria hawaiiensis Gardineria paradoxa CFV165 909023 Gardineria paradoxa Goniastrea edwardsi REL260 98797 Goniastrea edwardsi Goniastrea pectinata REL424 1076555 Goniastrea pectinata Goniastrea retiformis REL184 912836 Goniastrea retiformis Goniopora columna REL ReFuGe 725357 Goniopora columna Alatotrochus rubescens CFV116 3676790 Alatotrochus rubescens Goniopora djiboutiensis quek REL307 250806 Goniopora djiboutiensis Heliofungia actiniformis REL130 1075616 Heliofungia actiniformis Herpolitha limax REL298 1031346 Herpolitha limax Heterocyathus sulcatus DNA15 4714499 Heterocyathus sulcatus Hydnophora exesa REL400 337254 Hydnophora exesa Hydnophora microconos REL116 434206 Hydnophora microconos Hydnophora rigida REL134 838101 Hydnophora rigida Idiotrochus alatus A3 LIB117 3676868 Idiotrochus alatus Idiotrochus kikutii A2 LIB40 3676859 Idiotrochus kikutii Javania cailleti S027 144960 Javania cailleti Alveopora japonica Ryu 2019 3675533 Alveopora japonica Javania fusca CFV134 765459 Javania fusca Javania insignis LIB76 CFV135 411993 Javania insignis Javania lamprotichum LIB3 CFV7 242127 Javania lamprotichum Labyrinthocyathus langae CFV30 4714659 Labyrinthocyathus langae Labyrinthocyathus limatulus CFV109 4714658 Labyrinthocyathus limatulus Leptastrea purpurea REL324 98795 Leptastrea purpurea Leptoria phrygia REL276 931472 Leptoria phrygia Letepsammia acuta CFV138 Letepsammia fissilis CFV188 3675649 Letepsammia fissilis Letepsammia formosissima IGS113 1057654 Letepsammia formosissima Anthemiphyllia dentata LIB17 DNA34 191144 Anthemiphyllia dentata Letepsammia franki CFV139 3675650 Letepsammia franki Letepsammia superestes DNA41 Lithophyllon concinna REL066 943036 Lithophyllon concinna Lithophyllon undulatum REL304 873895 Lithophyllon undulatum Lobophyllia agaricia REL268 REL314 28681 Lobophyllia agaricia Lobophyllia hataii quek REL248 911681 Lobophyllia hataii Lobophyllia hemprichii quek REL198 313599 Lobophyllia hemprichii Lobophyllia radians REL ReFuGe 28682 Lobophyllia radians Lochmaeotrochus gardineri CFV145 4714578 Lochmaeotrochus gardineri Madracis auretenra IGS138 293215 Madracis auretenra Anthemiphyllia grossa CFV117 Madracis decactis 112477 Madracis decactis Madracis kauaiensis LIB33 CFV97 3674836 Madracis kauaiensis Madrepora oculata ANT281 292855 Madrepora oculata Madrepora porcellana CFV146 3675868 Madrepora porcellana Meandrina meandrites ANT162 906672 Meandrina meandrites Merulina ampliata REL197 468329 Merulina ampliata Merulina scabricula REL079 176716 Merulina scabricula Micromussa amakusensis REL471 REL473 373097 Micromussa amakusensis Monomyces rubrum LIB11 CFV57 3676217 Monomyces rubrum Montastraea cavernosa refuge 939291 Montastraea cavernosa Anthemiphyllia pacifica DNA13 3676138 Anthemiphyllia pacifica Montipora aequituberculata Kenkel 2017 522210 Montipora aequituberculata Montipora digitata REL133 REL120 134610 Montipora digitata Montipora informis quek REL078 3674877 Montipora informis Montipora mollis quek REL080 866317 Montipora mollis Montipora monesteriata quek REL256 Montipora samarensis quek REL496 3674910 Montipora samarensis Mussismilia braziliensis CV16 80311 Mussismilia braziliensis Mussismilia hartii CV13 Mussismilia hispida Muss 80308 Mussismilia hispida Mussismilia leptophylla CV10 706976 Favia leptophylla Anthemiphyllia spinifera IGS118 292622 Anthemiphyllia spinifera Mycedium elephantotus REL165 933778 Mycedium elephantotus Myriopathes ulex ANT15 4714092 Myriopathes ulex Notocyathus venustus LIB42 A6 3676871 Notocyathus venustus Oculina patagonica ANT192 795497 Oculina patagonica Oculina robusta ANT197 266041 Oculina robusta Oculina varicosa ANT182 266043 Oculina varicosa Oculina virgosa LIB24 CFV106 3675903 Oculina virgosa Orbicella annularis ANT166 250576 Orbicella annularis Orbicella faveolata ReFuGe 955287 Orbicella faveolata Orbicella franksi ANT167 955289 Orbicella franksi Antipathes atlantica ANT223 824259 Antipathes atlantica Oulastrea crispata REL426 44808 Oulastrea crispata Oulophyllia bennettae REL302 1076570 Oulophyllia bennettae Oulophyllia crispa REL194 377284 Oulophyllia crispa Oxypora lacera REL286 REL289 601938 Oxypora lacera Pachyseris rugosa REL311 3675337 Pachyseris rugosa Pachyseris speciosa quek REL411 832290 Pachyseris speciosa Paraconotrochus antarcticus ANT286 82596 Paraconotrochus antarcticus Paracyathus pulchellus IGS011 795493 Paracyathus pulchellus Paragoniastrea australensis REL275 98774 Paragoniastrea australensis Paragoniastrea deformis quek REL233 878035 Paragoniastrea deformis Acanthastrea rotundoflora quek REL498 3676015 Acanthastrea rotundoflora Antipathes grandis ANT14 194640 Antipathes grandis Parantipathes sp ANT146 Pavona decussata ANT18 427700 Pavona decussata Pectinia crassa REL063 3675940 Pectinia crassa Pectinia lactuca REL202 434210 Pectinia lactuca Pectinia paeonia REL181 549848 Pectinia paeonia Phyllangia americana Phyll 3676065 Phyllangia americana Placotrochus prolatus CFV148 Placotrochus willeyi CFV149 Platygyra carnosa ReFuGe 905797 Platygyra carnosa Platygyra sinensis REL ReFuGe 145351 Platygyra sinensis Aphanipathes pedata ANT137 342598 Aphanipathes pedata Platygyra sp quek SA530 Pleotrochus venustus CFV150 3676756 Pleotrochus venustus Pleotrochus zibrowii CFV151 3676870 Pleotrochus zibrowii Plerogyra sinuosa REL170 436755 Plerogyra sinuosa Plesiastrea versipora REL315 645879 Plesiastrea versipora Pocillopora acuta quek REL403 5140143 Pocillopora acuta Pocillopora damicornis ANT16 176783 Pocillopora damicornis Podabacia crustacea REL206 1031351 Podabacia crustacea Polymyces wellsi LIB5 CFV26 3676294 Polymyces wellsi Polyphylia talpina REL167 Astrangia sp DNA45 Porites astreoides ANT184 208979 Porites astreoides Porites branneri IGS071 452842 Porites branneri Porites cf australiensis ANT270 Porites cf colonensis ANT235 Porites divaricata ANT196 452844 Porites divaricata Porites evermanni ANT265 101813 Porites evermanni Porites lobata ANT240 208977 Porites lobata Porites lutea ANT269 431927 Porites lutea Porites panamensis ANT186 1008765 Porites panamensis Porites porites ANT234 732666 Porites porites Astreopora expansa REL ReFuGe 3675122 Astreopora expansa Porites sverdrupi ANT198 431951 Porites sverdrupi Pourtalosmilia conferta CFV162 3676396 Pourtalosmilia conferta Premocyathus sp IGS008 Psammocora columna REL160 555521 Coscinaraea columna Psammocora contigua REL180 342211 Psammocora contigua Psammocora haimiana REL163 859588 Psammocora haimiana Pseudodiploria strigosa IGS140 124774 Pseudodiploria strigosa Pseudosiderastrea tayamai REL299 REL320 402722 Pseudosiderastrea tayamai Rhizopsammia cylindrica CFV152 Rhizopsammia verrilli CFV153 3677042 Rhizopsammia verrilli Astreopora listeri REL138 REL319 1045223 Astreopora listeri Rhizosmilia maculata LIB22 CFV98 816847 Rhizosmilia maculata Rhizosmilia robusta CFV154 242133 Rhizosmilia robusta Rhizotrochus typus IGS115 606969 Rhizotrochus typus Rhombopsammia niphada CFV155 909033 Rhombopsammia niphada Rhombopsammia owensae CFV156 Ricordea florida ANT154 569496 Ricordea florida Scapophyllia cylindrica REL261 1065035 Scapophyllia cylindrica Scolymia wellsii IGS125 3675994 Scolymia wellsii Seriatopora hystrix ReFuGe 957750 Seriatopora hystrix Siderastrea radians IGS142 675590 Siderastrea radians Astreopora miriophthalma REL216 REL258 Siderastrea siderans ANT165 Siderastrea stellata CV15 372070 Siderastrea stellata Solenosmilia variabilis KCCC 496913 Solenosmilia variabilis Stauropathes arctica ANT147 4714216 Stauropathes arctica Stauropathes sp ANT144 Stenocyathus vermiformis LIB43 A7 101354 Stenocyathus vermiformis Stephanocoenia intersepta IGS143 3675195 Stephanocoenia intersepta Stephanocoenia sp CV08 Stephanocyathus coronatus DNA63 159374 Stephanocyathus coronatus Stephanocyathus weberianus CFV157 557715 Stephanocyathus weberianus Atlantia caboverdiana Katia Stephanophyllia complicata LIB37 DNA96 334409 Stephanophyllia complicata Stephanophyllia fungulus CFV133 3675660 Stephanophyllia fungulus Stephanophyllia neglecta LIB6 DNA99 3675661 Stephanophyllia neglecta Stolarskicyathus pocilliformis LIB44 A8 4715646 Stolarskicyathus pocilliformis Stylophora pistillata ANT17 713802 Stylophora pistillata Telopathes magna ANT226 Temnotrochus kermadecensis CFV159 3676713 Temnotrochus kermadecensis Thalamophyllia tenuescens CFV173 3676335 Thalamophyllia tenuescens Thecopsammia sp ANT284 Thrypticotrochus odonthercus LIB45 A9 Aulocyathus juvenescens LIB47 B2 4714559 Aulocyathus juvenescens Thrypticotrochus petterdi CFV160 3676648 Thrypticotrochus petterdi Trachyphyllia geoffroyi REL425 999958 Trachyphyllia geoffroyi Trochocyathus brevispina CFV113 3676683 Trochocyathus brevispina Trochocyathus caryophillioides IGS031 Trochocyathus cepulla CFV132 3676616 Trochocyathus cepulla Trochocyathus hastatus CFV130 3676647 Trochocyathus hastatus Trochocyathus philippinensis CFV129 3676662 Trochocyathus philippinensis Trochocyathus rhombocolumna CFV114 714653 Trochocyathus rhombocolumna Trochocyathus wellsi LIB46 A10 3676620 Trochocyathus wellsi Truncatoflabellum paripavoninum LIB23 CFV22 3676170 Truncatoflabellum paripavoninum Aulocyathus recidivus CFV185 4714558 Aulocyathus recidivus Truncatoflabellum pusillum CFV127 3676158 Truncatoflabellum pusillum Truncatoflabellum vanuatu CFV126 3676176 Truncatoflabellum vanuatu Truncatoflabellum virgintifarium DNA25 Tubastraea coccinea Tcocc 139336 Tubastraea coccinea Tubastraea diaphana Tdiap 3676897 Tubastraea diaphana Tubastraea micranthus REL201 957744 Tubastraea micranthus Tubastraea tagusensis Ttagu 3676899 Tubastraea tagusensis Turbinaria mesenterina REL ReFuGe 957748 Turbinaria mesenterina Umbellapathes sp ANT150 Vaughanella dirigolata CFV124 Balanophyllia chnous LIB31 CFV102 3676919 Balanophyllia chnous Acanthopathes thyoides ANT135 809286 Acanthopathes thyoides Balanophyllia desmophylloides D5 LIB54 Balanophyllia elegans ANT185 192310 Balanophyllia elegans Balanophyllia gigas IGS107 159378 Balanophyllia gigas Bathypathes cf patula ANT143 Bernardpora stutchburyi REL029 REL247 3675414 Bernardpora stutchburyi Bourneotrochus stellulatus DNA08 4714576 Bourneotrochus stellulatus Caryophyllia abrupta LIB41 A4 3676521 Caryophyllia abrupta Caryophyllia ambrosia CFV170 649867 Caryophyllia ambrosia Caryophyllia antarctica LIB38 CFV85 3676436 Caryophyllia antarctica Caryophyllia arnoldi ANT180 3676487 Caryophyllia arnoldi Acropora aspera quek 2020 824032 Acropora aspera Caryophyllia diomedeae LIB10 CFV39 614550 Caryophyllia diomedeae Caryophyllia hawaiiensis LIB30 CFV99 3676456 Caryophyllia hawaiiensis Caryophyllia japonica CFV103 3676437 Caryophyllia japonica Caryophyllia laevigata CFV171 3676461 Caryophyllia laevigata Caryophyllia profunda LIB25 CFV61 3676468 Caryophyllia profunda Caryophyllia scobinosa IGS119 1086856 Caryophyllia scobinosa Caryophyllia unicristata CFV110 93240 Caryophyllia unicristata Caulastraea echinulata REL077 959866 Caulastraea echinulata Cladocora debilis CFV163 3675848 Cladocora debilis Cladocora sp IGS009 Acropora digitifera ReFuGe 366634 Acropora digitifera Cladopsammia alisae CFV166 Cladopsammia cheni CFV137 Coelastrea aspera REL122 968679 Coelastrea aspera Coenacyathus sebroecki LIB34 Conotrochus assymetros CFV108 Conotrochus brunneus CFV140 3676354 Conotrochus brunneus Corallimorphus profundus LIB1 CFV1 3673746 Corallimorphus profundus Corynactis chilensis ANT1 3673726 Corynactis chilensis Crispatotrochus rubescens CFV120 3676429 Crispatotrochus rubescens Crispatotrochus rugosus CFV121 322060 Crispatotrochus rugosus Acropora hyacinthus ReFuGe 447997 Acropora hyacinthus Cryptotrochus brevipalus LIB49 B9 3676832 Cryptotrochus brevipalus Ctenactis echinata quek REL502 614115 Ctenactis echinata Culicia rubeola CFV187 3676106 Culicia rubeola Cyathotrochus pileus IGS109 387486 Cyathotrochus pileus Cyphastrea chalcidicum REL162 22185 Cyphastrea chalcidicum Cyphastrea microphthalma REL271 858691 Cyphastrea microphthalma Cyphastrea seralia REL412 Dactylotrochus cervicornis LIB18 487047 Dactylotrochus cervicornis Danafungia scruposa REL067 REL501 873888 Danafungia scruposa Deltocyathus cameratus DNA62 3676369 Deltocyathus cameratus Acropora millepora REL ReFuGe 718262 Acropora millepora (species in domain Eukaryota) Deltocyathus heteroclitus CFV123 3676378 Deltocyathus heteroclitus Deltocyathus magnificus IGS128 487041 Deltocyathus magnificus Deltocyathus rotulus IGS129 1013056 Deltocyathus rotulus Deltocyathus suluensis CFV111 1013052 Deltocyathus suluensis Dendrogyra cylindrus ANT168 623075 Dendrogyra cylindrus Dendrophyllia alcocki LIB48 B7 3677083 Dendrophyllia alcocki Dendrophyllia sp Dendrophyllia sp transK ReFuGe Desmophyllum dianthus LIB21 CFV93 623073 Desmophyllum dianthus Desmophyllum pertusum IGS036 973784 Lophelia pertusa Diploastrea heliopora REL418 623071 Diploastrea heliopora Acropora muricata ANT13 366228 Acropora muricata Diploria labyrinthiformis IGS137 706970 Diploria labyrinthiformis Dipsastraea favus REL087 145361 Dipsastraea favus Dipsastraea matthaii REL069 98789 Dipsastraea matthaii Dipsastraea maxima REL242 98786 Dipsastraea maxima Dipsastraea mirabilis REL378 Dipsastraea speciosa REL141 240054 Dipsastraea speciosa Discosoma carlgreni ANT3 150817 Discosoma carlgreni Discosoma santahelenae ANT153 Distolotrochus lozoueti IGS108 Echinophyllia sp REL306 REL384 Acropora palmata ANT163 507954 Acropora palmata Echinopora gemmacea REL243 601948 Echinopora gemmacea Echinopora horrida REL072 959875 Echinopora horrida Echinopora lamellosa REL070 543334 Echinopora lamellosa Eguchipsammia fistula transK ReFuGe 939229 Eguchipsammia fistula Eguchipsammia gaditana CFV101 3677030 Eguchipsammia gaditana Eguchipsammia japonica LIB9 CFV36 3677032 Eguchipsammia japonica Eguchipsammia serrula LIB55 D6 Elatopathes abietina ANT229 299796 Elatopathes abietina Enallopsammia profunda ANT283 3676895 Enallopsammia profunda Enallopsammia rostrata LIB19 CFV91 992410 Enallopsammia rostrata ot:time Myr Maximum likelihood node2 node1 false true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true 0 0 576 0 577 289 2 1 2