Hong C.
Copes W.E.
Yang X.
Yang X., Copes W.E., & Hong C.
2013-12-04
Fungal Biology
Phytophthora stricta; Phytophthora macilentosa; irrigation water; high temperature-tolerant cluster
Two novel species representing a new clade and cluster of Phytophthora
Yang X., Copes W.E., & Hong C. 2014. Two novel species representing a new clade and cluster of Phytophthora. Fungal Biology , 118: 72-82.
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Yang X., Copes W.E., & Hong C. 2014. Two novel species representing a new clade and cluster of Phytophthora. Fungal Biology , 118: 72-82.
2014
2013-07-10
10.1016/j.funbio.2013.11.003
82
2013-12-04
72-82
2014
Fungal Biology
Study
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118
Generated on Sun Jun 29 16:30:53 EDT 2014
Mapped from TreeBASE schema using org.cipres.treebase.domain.nexus.nexml.NexmlDocumentWriter@27aa9002 $Rev: 1060 $
14477
Two novel Phytophthora species from irrigation water of an ornamental plant nursery in Mississippi
Mapped from TreeBASE schema using org.cipres.treebase.domain.nexus.nexml.NexmlOTUWriter@468bb9ae $Rev: 1040 $
Phytophthora fragariae isolateA2 AY564177
152482
Phytophthora fragariae
Phytophthora primulae 29E9 KF358238
662694
Phytophthora primulae
Phytophthora megakarya P1664 HQ261611
252692
Phytophthora megakarya
Phytophthora borealis AKWA58.1.0708 HM004232
53956
Phytophthora borealis
Phytophthora alni subsp. uniformis P875 AF139367
909697
Phytophthora alni
Phytophthora irrigata 23J7 KC733453
342762
Phytophthora irrigata
Phytophthora humicola 32F8 KF112855
88466
Phytophthora humicola
Phytophthora mississippiae 57J3 KF112860
5219287
Phytophthora mississippiae
Phytophthora inflata IMI342898 AY564187
88468
Phytophthora inflata
Phytophthora austrocedrae 41B6 KF358220
527063
Phytophthora austrocedrae
Phytophthora nicotianae 22F9 KF317070
524651
Phytophthora nicotianae
Phytophthora mengei 42B2 EU748545
1054669
Phytophthora mengei
Phytophthora fallax 310L DQ297391
834837
Phytophthora fallax
Pythium aphanidermatum P2 AY564163
504920
Pythium aphanidermatum
Pythium aphanidermatum P1779 GU983641
504920
Pythium aphanidermatum
Phytophthora melonis 32F6 KF317088
262028
Phytophthora melonis
Phytophthora citrophthora 3E5 KF317096
252699
Phytophthora citrophthora
Phytophthora tentaculata CBS41296 DQ335634
662695
Phytophthora tentaculata
Phytophthora rosacearum 22J9 KF112864
677241
Phytophthora rosacearum
Phytophthora porri CBS56786 HQ643318
88503
Phytophthora porri
Phytophthora aquimorbida
Phytophthora aquimorbida 40A6 FJ666127
Phytophthora citricola 33H8 KF317095
152480
Phytophthora citricola
Phytophthora stricta 58A3 KF192704
5343360
Phytophthora stricta
Phytophthora heveae IMI180616 AF266770
88464
Phytophthora heveae
Phytophthora ramorum CBS101553 EU427470
769955
Phytophthora ramorum
Phytophthora clandestina IMI287317 AY564172
103293
Phytophthora clandestina
Phytophthora cambivora CBS114085 HQ643178
152479
Phytophthora cambivora
Phytophthora parsiana 47C3 KC733446
1084178
Phytophthora parsiana
Phytophthora lacustris P245 AF266793
626100
Phytophthora lacustris
Phytophthora ilicis CBS114348 JX524159
103294
Phytophthora ilicis
Phytophthora insolita 38E1 AY564188
1070126
Phytophthora insolita
Phytophthora psychrophila 29J5 KF358227
605931
Phytophthora psychrophila
Phytophthora cajani 33D9 KF358221
609882
Phytophthora cajani
Phytophthora elongata CBS125799 GQ847754
569798
Phytophthora elongata
Phytophthora cryptogea HR1.ss.pp.99 AY564174
775732
Phytophthora cryptogea
Phytophthora riparia 3.100B9F HM004225
53952
Phytophthora riparia
Phytophthora macilentosa 58A5 KF192698
5343363
Phytophthora macilentosa
Phytophthora multivora WAC13201 FJ237521
648173
Phytophthora multivora
Phytophthora alticola 47G5 KF317084
516856
Phytophthora alticola
Phytophthora rubi CBS96795 HQ643340
662691
Phytophthora rubi
Phytophthora colocasiae 35D3 KF317076
88463
Phytophthora colocasiae
Phytophthora gemini CBS123381 FJ217680
807550
Phytophthora gemini
Phytophthora cinnamomi CBS14422 HQ643189
775735
Phytophthora cinnamomi
Phytophthora mirabilis Pic99129 AY564153
88500
Phytophthora mirabilis
Phytophthora capensis P1819 GU191219
917834
Phytophthora capensis
Phytophthora megasperma IMI133317 AY564194
775722
Phytophthora megasperma
Phytophthora macilentosa 58A8 KF192709
5343363
Phytophthora macilentosa
Phytophthora inundata 30J3 KF112863
572665
Phytophthora inundata
Phytophthora captiosa 310C DQ297402
505188
Phytophthora captiosa
Phytophthora foliorum LT192.010505 EU124918
480561
Phytophthora foliorum
Phytophthora quininea CBS40748 AY564200
715674
Phytophthora quininea
Phytophthora virginiae 46A2 KC295544
5385440
Phytophthora virginiana
Phytophthora stricta 58A3 KF192696
5343360
Phytophthora stricta
Phytophthora phaseoli CBS55688 HQ643309
88502
Phytophthora phaseoli
Phytophthora andina EC3421 AY770738
36776
Phytophthora andina
Phytophthora phaseoli CBS55688 AY564159
88502
Phytophthora phaseoli
Phytophthora rubi R49 DQ674736
662691
Phytophthora rubi
Phytophthora lactucae BPIC1985 KC478768
4028574
Phytophthora lactucae
Phytophthora stricta 58A1 KF192702
5343360
Phytophthora stricta
Phytophthora austrocedrae 41B6 KF358233
527063
Phytophthora austrocedrae
Phytophthora polonica 49J9 KC733456
212631
Phytophthora polonica
Phytophthora plurivora 22E9 KF317080
1089387
Phytophthora plurivora
Phytophthora vignae CBS24173 AY564205
740159
Phytophthora vignae
Phytophthora litoralis CBS127953 HQ012948
357787
Phytophthora litoralis
Phytophthora pseudotsugae CBS44484 AY707988
152485
Phytophthora pseudotsugae
Phytophthora constricta 55C3 KC733450
22496
Phytophthora constricta
Phytophthora sansomeana 22J6 KF358231
559368
Phytophthora sansomeana
Phytophthora colocasiae 35D3 KF317097
88463
Phytophthora colocasiae
Phytophthora syringae CBS13223 AF380146
740158
Phytophthora syringae
Phytophthora ramorum 10103 FJ801269
769955
Phytophthora ramorum
Phytophthora stricta 58A4 KF192697
5343360
Phytophthora stricta
Phytophthora gonapodyides 34A8 KF112854
23193
Phytophthora gonapodyides
Phytophthora uliginosa 50A2 KF358232
605932
Phytophthora uliginosa
Phytophthora citricola 33H8 KF317074
152480
Phytophthora citricola
Phytophthora nemorosa 41C4 KF317082
459224
Phytophthora nemorosa
Phytophthora multivesiculata CBS54596 AF266790
88501
Phytophthora multivesiculata
Phytophthora meadii CBS21988 HQ643268
130119
Phytophthora meadii
Phytophthora palmivora 22G9 KF317086
405030
Phytophthora palmivora
Phytophthora macrochlamydospora 33E1 KC733445
740154
Phytophthora macrochlamydospora
Phytophthora stricta 58A4 KF192705
5343360
Phytophthora stricta
Phytophthora quercetorum 15C7 KF358228
399695
Phytophthora quercetorum
Phytophthora infestans 27A8 KC733447
5279502
Phytophthora infestans (species if:232148 in Stramenopiles)
Phytophthora erythroseptica CBS12923 HQ643221
552580
Phytophthora erythroseptica
Phytophthora asparagi SP326 EF185089
610547
Phytophthora asparagi
Phytophthora hibernalis CBS52277 HQ643241
81905
Phytophthora hibernalis
Phytophthora gallica 50A1 KF317090
261630
Phytophthora gallica
Phytophthora amnicola DH228 JQ029956
18110
Phytophthora amnicola
Phytophthora pseudosyringae 30A8 KF317105
114629
Phytophthora pseudosyringae
Phytophthora ipomoeae P10225 HQ261597
36769
Phytophthora ipomoeae
Phytophthora hedraiandra CBS111725 AY769115
850408
Phytophthora hedraiandra
Phytophthora richardiae 31E8 KF358242
1070127
Phytophthora richardiae
Phytophthora tropicalis CBS43491 DQ464057
757305
Phytophthora tropicalis
Phytophthora plurivora 22E9 KF317101
1089387
Phytophthora plurivora
Phytophthora cichorii CBS115029 KC478773
4028572
Phytophthora cichorii
Phytophthora iranica CBS37472 HQ643254
740155
Phytophthora iranica
Phytophthora andina EC3421 AY564160
36776
Phytophthora andina
Phytophthora multivesiculata CBS54596 AY564195
88501
Phytophthora multivesiculata
Phytophthora parsiana 47C3 KC733455
1084178
Phytophthora parsiana
Phytophthora richardiae 31E8 KF358230
1070127
Phytophthora richardiae
Phytophthora glovera CBS121969 AF279124
129650
Phytophthora glovera
Phytophthora gonapodyides 34A8 KC733448
23193
Phytophthora gonapodyides
Phytophthora bilorbang CBS161653 JQ256377
798197
Phytophthora bilorbang
Phytophthora pini 45F1 KF317100
1054670
Phytophthora pini
Phytophthora siskiyouensis 41B7 KF317081
325901
Phytophthora siskiyouensis
Phytophthora aquimorbida
Phytophthora aquimorbida 40A6 GQ294536
Phytophthora idaei P6767 FJ801946
152484
Phytophthora idaei
Phytophthora trifolii CBS117687 DQ335640
856914
Phytophthora trifolii
Phytophthora syringae CBS36452 AY564203
740158
Phytophthora syringae
Phytophthora alticola 47G5 KF317106
516856
Phytophthora alticola
Phytophthora europaea CBS109049 AF449493
605928
Phytophthora europaea
Phytophthora hydropathica 5D1 EU583793
342767
Phytophthora hydropathica
Phytophthora citrophthora 3E5 KF317075
252699
Phytophthora citrophthora
Phytophthora tropicalis PD97.11132 AY564161
757305
Phytophthora tropicalis
Phytophthora mirabilis CBS67885 HQ643287
88500
Phytophthora mirabilis
Phytophthora hedraiandra CBS111725 AY707987
850408
Phytophthora hedraiandra
Phytophthora meadii CBS21988 AY564192
130119
Phytophthora meadii
Phytophthora vignae P7471 HQ261723
740159
Phytophthora vignae
Phytophthora stricta 58A1 KF192694
5343360
Phytophthora stricta
Phytophthora polonica 49J9 KF358225
212631
Phytophthora polonica
Phytophthora insolita PMC5 GU111612
1070126
Phytophthora insolita
Phytophthora alni subsp. alni PAA130 DQ202500
909697
Phytophthora alni
Phytophthora uliginosa 50A2 KF358244
605932
Phytophthora uliginosa
Phytophthora alni subsp. alni P772 AY689133
909697
Phytophthora alni
Phytophthora europaea ATCC.MYA1022 AB649200
605928
Phytophthora europaea
Phytophthora nemorosa 41C4 KF317104
459224
Phytophthora nemorosa
Phytophthora cambivora PC643 DQ202503
152479
Phytophthora cambivora
Phytophthora thermophila CBS127954 EU301155
460107
Phytophthora thermophila
Phytophthora fluvialis MURU468 JF701436
692904
Phytophthora fluvialis
Phytophthora gibbosa CBS127951 HQ012933
460097
Phytophthora gibbosa
Phytophthora dauci CBS127102 KC478761
4028573
Phytophthora dauci
Phytophthora drechsleri 23J6 EU423315
405025
Phytophthora drechsleri
Phytophthora alni subsp. multiformis P770 AF139368
909697
Phytophthora alni
Phytophthora melonis 32F6 KF317110
262028
Phytophthora melonis
Phytophthora capsici 22F4 KF317073
5279506
Phytophthora capsici (species ncbi:4784 in Stramenopiles)
Phytophthora macilentosa 58A8 KF192701
5343363
Phytophthora macilentosa
Phytophthora erythroseptica SCRP240 AY659587
552580
Phytophthora erythroseptica
Phytophthora fragariae CBS20946 HQ643230
152482
Phytophthora fragariae
Phytophthora lateralis IMI040503 AF266804
88499
Phytophthora lateralis
Phytophthora obscura BBA2.94.IIB HQ917910
298295
Phytophthora obscura
Phytophthora quininea CBS40648 DQ275189
715674
Phytophthora quininea
Phytophthora stricta 58A2 KF192703
Phytophthora irrigata 23J7 EU334634
342762
Phytophthora irrigata
Phytophthora medicaginis 23A4 KF358236
856913
Phytophthora medicaginis
Phytophthora primulae 29E9 KF358226
662694
Phytophthora primulae
Phytophthora inflata IMI342898 AF266789
88468
Phytophthora inflata
Phytophthora pistaciae 41A9 KF358224
230520
Phytophthora pistaciae
Phytophthora pseudotsugae CBS44484 AY769116
152485
Phytophthora pseudotsugae
Phytophthora cactorum P6183 AY564167
710888
Phytophthora cactorum
Phytophthora pinifolia CMW26668 JN935961
920999
Phytophthora pinifolia
Phytophthora cactorum CBS113344 HQ643163
710888
Phytophthora cactorum
Phytophthora sansomeana 22J6 KF358243
559368
Phytophthora sansomeana
Phytophthora pinifolia CMW26668 EU725806
920999
Phytophthora pinifolia
Phytophthora psychrophila 29J5 KF358239
605931
Phytophthora psychrophila
Phytophthora cryptogea CBS11319 HQ643216
775732
Phytophthora cryptogea
Phytophthora foliorum LT192 HQ261560
480561
Phytophthora foliorum
Phytophthora inundata 30J3 KF112856
572665
Phytophthora inundata
Phytophthora virginiae 46A2 KC295546
5385440
Phytophthora virginiana
Phytophthora medicaginis 23A4 KF358223
856913
Phytophthora medicaginis
Phytophthora morindae Ph697 FJ469147
391819
Phytophthora morindae
Phytophthora botryosa 46C2 KF317093
609883
Phytophthora botryosa
Phytophthora palmivora 22G9 KF317108
405030
Phytophthora palmivora
Phytophthora siskiyouensis 41B7 KF317102
325901
Phytophthora siskiyouensis
Phytophthora brassicae CBS17987 AF380148
359638
Phytophthora brassicae
Phytophthora clandestina P3943 HQ261537
103293
Phytophthora clandestina
Phytophthora macrochlamydospora 33E1 KC733454
740154
Phytophthora macrochlamydospora
Phytophthora himalsilva isolate44 HM752784
4028478
Phytophthora himalsilva
Phytophthora boehmeriae 45F8 KF317089
189661
Phytophthora boehmeriae
Phytophthora infestans 27A8 KC733443
5279502
Phytophthora infestans (species if:232148 in Stramenopiles)
Phytophthora rosacearum 22J9 KF112857
677241
Phytophthora rosacearum
Phytophthora gregata CBS127952 HQ012942
460101
Phytophthora gregata
Phytophthora katsurae 22H6 KF317087
88498
Phytophthora katsurae
Phytophthora sojae 28F9 KC733444
740156
Phytophthora sojae
Phytophthora humicola 32F8 KF112862
88466
Phytophthora humicola
Phytophthora ipomoeae Pic99165 AY564158
36769
Phytophthora ipomoeae
Phytophthora quercetorum 15C7 KF358240
399695
Phytophthora quercetorum
Phytophthora quercina 30A5 KF358229
23194
Phytophthora quercina
Phytophthora capsici 22F4 KF317094
5279506
Phytophthora capsici (species ncbi:4784 in Stramenopiles)
Phytophthora idaei IMI313727 AY564185
152484
Phytophthora idaei
Phytophthora brassicae CBS17987 AY564198
359638
Phytophthora brassicae
Phytophthora mississippiae 57J3 KF112852
5219287
Phytophthora mississippiae
Phytophthora captiosa 46H7 KC733449
505188
Phytophthora captiosa
Phytophthora pini 45F1 KF317079
1054670
Phytophthora pini
Phytophthora cajani 33D9 KF358234
609882
Phytophthora cajani
Phytophthora megasperma CBS40272 HQ643275
775722
Phytophthora megasperma
Phytophthora hydrogena 46A3 KC249962
4028432
Phytophthora hydrogena
Phytophthora ilicis CBS114348 JX524158
103294
Phytophthora ilicis
Phytophthora hibernalis CBS52277 AY564183
81905
Phytophthora hibernalis
Phytophthora macilentosa 58A7 KF192700
Phytophthora megakarya IMI337098 AY564193
252692
Phytophthora megakarya
Phytophthora pseudosyringae 30A8 KF317083
114629
Phytophthora pseudosyringae
Phytophthora bisheria 29D2 KF317092
466152
Phytophthora bisheria
Phytophthora fallax 46J2 KC733451
834837
Phytophthora fallax
Phytophthora frigida 47G8 KF317098
291839
Phytophthora frigida
Phytophthora macilentosa 58A5 KF192706
Phytophthora hydropathica 5D1 KC733452
342767
Phytophthora hydropathica
Phytophthora chrysanthemi GF749 AB437135
925922
Phytophthora chrysanthemi
Phytophthora pistaciae 41A9 KF358237
230520
Phytophthora pistaciae
Phytophthora hydrogena 46A3 KC249959
Phytophthora stricta 58A2 KF192695
5343360
Phytophthora stricta
Phytophthora arenaria CBS127950 HQ013219
595343
Phytophthora arenaria
Phytophthora katsurae 22H6 KF317109
88498
Phytophthora katsurae
Phytophthora constricta CBS125801 HQ013225
22496
Phytophthora constricta
Phytophthora frigida 47G8 KF317077
291839
Phytophthora frigida
Phytophthora macilentosa 58A6 KF192707
Phytophthora heveae CBS29629 AY564182
88464
Phytophthora heveae
Phytophthora macilentosa 58A7 KF192708
5343363
Phytophthora macilentosa
Phytophthora bisheria 29D2 KF317071
466152
Phytophthora bisheria
Phytophthora mexicana 30G7 KF317078
399694
Phytophthora mexicana
Phytophthora kernoviae 46C9 KF358222
22095
Phytophthora kernoviae
Phytophthora pluvialis OSC.LC.9.2.020508 KC529657
4922174
Phytophthora pluvialis
Phytophthora cinnamomi 10A6 AY564169
775735
Phytophthora cinnamomi
Phytophthora lateralis CBS16842 AY564191
88499
Phytophthora lateralis
Phytophthora macilentosa 58A6 KF192699
Phytophthora botryosa 46C2 KF317072
609883
Phytophthora botryosa
Mapped from TreeBASE schema using org.cipres.treebase.domain.nexus.nexml.NexmlTreeBlockWriter@4dcd0b77 $Rev: 1040 $
true
Species Tree
87
Unrated
Single
true
true
true
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true
true
true
true
true
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true
true
true
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true
true
true
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Maximum likelihood
Tn10290351
Tn10290508
false
Species Tree
127
Unrated
Single
true
true
true
true
true
true
true
true
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false
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true