pythonVersion 2.7.9 pythonImplementation CPython Tetrapods true Morpological/molecular combined ML tree tree1 ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues ^ot:bootstrapValues @label ^ot:ottId otu102 otu103 otu113 otu12 otu139 otu146 otu147 otu191 otu2 otu28 otu29 otu32 otu39 ^ot:comment ^ot:nodeLabelDescription ^ot:nodeLabelMode ^ot:nodeLabelTimeUnit tree1 The tree itself is not present in Dryad: it was sent to me by John J. Wiens with a note of approval for release under CC0 hyanwong Mark T. Holder 35888 Squamata (order in superorder Lepidosauria) false ot_505 Tod W. Reeder, Ted M. Townsend, Daniel G. Mulcahy, Brice P. Noonan, Perry L. Wood, Jack W. Sites, John J. Wiens, 2015, 'Integrated Analyses Resolve Conflicts over Squamate Reptile Phylogeny and Reveal Unexpected Placements for Fossil Taxa', PLOS ONE, vol. 10, no. 3, p. e0118199 2015 Homo 770315 Homo sapiens Cordylosaurus subtesselatus 515072 Cordylosaurus subtessellatus Ctenomastax parva 4945957 Ctenomastax parva Temujinia ellisoni 4125746 Temujinia ellisoni Saichangurvel davidsoni Aciprion formosum Morunasaurus annularis 961004 Morunasaurus annularis Enyalioides laticeps 240159 Enyalioides laticeps Gambelia wislizenii 244470 Gambelia wislizenii Crotaphytus collaris 244476 Crotaphytus collaris Corytophanes cristatus 3089 Corytophanes cristatus Basiliscus basiliscus 1009501 Basiliscus basiliscus Myrmecodaptria microphagosa 4125798 Myrmecodaptria microphagosa Leiocephalus barahonensis 32977 Leiocephalus barahonensis Sauromalus ater 778653 Sauromalus ater Brachylophus fasciatus 458467 Brachylophus fasciatus Armandisaurus explorator Dipsosaurus dorsalis 763599 Dipsosaurus dorsalis Liolaemus bellii 1016167 Liolaemus bellii Phymaturus palluma 979221 Phymaturus palluma Urostrophus vautieri 435158 Urostrophus vautieri Leiosaurus catamarcensis 382357 Leiosaurus catamarcensis Pristidactylus torquatus 968161 Pristidactylus torquatus Carusia intermedia Chalarodon madagascariensis 32979 Chalarodon madagascariensis Oplurus cyclurus 32961 Oplurus cyclurus Petrosaurus mearnsi 160827 Petrosaurus mearnsi Uta stansburiana 867320 Uta stansburiana Sceloporus variabilis 342584 Sceloporus chrysostictus Phrynosoma platyrhinos 671419 Phrynosoma platyrhinos Uma scoparia 1062444 Uma scoparia Anolis carolinensis 705356 Anolis carolinensis Polychrus marmoratus 970155 Polychrus marmoratus Stenocercus guentheri 647085 Stenocercus guentheri Eoxanta lacertifrons 4125850 Eoxanta lacertifrons Uranoscodon superciliosus 32969 Uranoscodon superciliosus Plica plica 761851 Plica plica Polrussia mongoliensis 4125907 Polrussia mongoliensis Isodontosaurus gracilis 4126039 Isodontosaurus gracilis Zapsosaurus sceliphros 4125739 Zapsosaurus sceliphros Tchingisaurus multivagus 4125794 Tchingisaurus multivagus Gobinatus arenosus 4126066 Gobinatus arenosus Adamisaurus magnidentatus 4125835 Adamisaurus magnidentatus Polyglyphanodon sternbergi 4124528 Polyglyphanodon sternbergi Gilmoreteius Globaura venusta 4125780 Globaura venusta Heloderma suspectum 713774 Heloderma suspectum Heloderma horridum 713768 Heloderma horridum Celestus enneagrammus 975911 Celestus enneagrammus Anniella pulchra 891128 Anniella pulchra Pseudopus apodus 1040087 Pseudopus apodus Elgaria multicarinata 490516 Elgaria multicarinata Peltosaurus granulosus Helodermoides tuberculatus Xenosaurus grandis 690592 Xenosaurus grandis Xenosaurus platyceps 491076 Xenosaurus platyceps Hymenosaurus clarki 4125885 Hymenosaurus clarki Shinisaurus crocodilurus 651194 Shinisaurus crocodilurus Lanthanotus borneensis 872936 Lanthanotus borneensis Varanus exanthematicus 713773 Varanus exanthematicus Varanus salvator 872963 Varanus salvator Varanus acanthurus 747042 Varanus acanthurus Saniwa 4119731 Saniwa Aiolosaurus oriens 4125927 Aiolosaurus oriens Estesia mongoliensis 4126144 Estesia mongoliensis Gobiderma pulchrum 4126146 Gobiderma pulchra Teius teyou 164954 Teius teyou Acontias 601077 Acontias Aspidoscelis tigris 690595 Aspidoscelis tigris Callopistes maculatus 389537 Callopistes maculatus Tupinambis teguixin 661793 Tupinambis teguixin Pholidobolus 348437 Pholidobolus Colobosaura modesta 846835 Colobosaura modesta Rhineura floridana 707061 Rhineura floridana Spathorhynchus fossorium 4126060 Spathorhynchus fossorium Dyticonastis rensbergeri 4126058 Dyticonastis rensbergeri Bipes canaliculatus 916642 Bipes canaliculatus Bipes biporus 109090 Bipes biporus Brachymeles gracilis 686910 Brachymeles gracilis Diplometopon zarudnyi 106926 Diplometopon zarudnyi Trogonophis wiegmanni 938995 Trogonophis wiegmanni Geocalamus acutus 1098646 Geocalamus acutus Amphisbaena fuliginosa 692464 Amphisbaena fuliginosa Takydromus ocellatus 624311 Takydromus sexlineatus ocellatus Lacerta viridis 220527 Lacerta viridis Dibamus novaeguineae 130803 Dibamus novaeguineae Anelytropsis papillosus 491018 Anelytropsis papillosus Coleonyx variegatus 677271 Coleonyx variegatus Eublepharis macularius 662992 Eublepharis macularius Trachylepis quinquetaeniata 1030886 Trachylepis quinquetaeniata Aeluroscalobates felinus 4946128 Aeluroscalabotes felinus Gekko gecko 953907 Gekko gecko Phelsuma lineata 730089 Phelsuma lineata Gonatodes albogularis 723088 Gonatodes albogularis Teratoscincus 843711 Teratoscincus Saltuarius cornutus 641178 Saltuarius cornutus Lialis burtonis 24142 Lialis burtonis Delma borea 261929 Delma borea Strophurus ciliaris 432768 Strophurus ciliaris Rhacodactylus auriculatus 657706 Rhacodactylus auriculatus Tiliqua scincoides 1016681 Tiliqua scincoides Gephyrosaurus bridensis 4119560 Gephyrosaurus bridensis Kallimodon pulchellus Sphenodon punctatus 35890 Sphenodon punctatus Chelydra 587316 Chelydra Podocnemis 709467 Podocnemis Gallus 153562 Gallus Dromaius 283193 Dromaius Alligator 335593 Alligator Crocodylus 35868 Crocodylus Tachyglos 16047 Tachyglossus Tepexisaurus tepexii Sphenomorphus solomonis 1079367 Sphenomorphus solomonis Mus 1068778 Mus Eugongylus rufescens 155782 Eugongylus rufescens Plestiodon fasciatus 979463 Plestiodon fasciatus Scincus 228754 Scincus Feylinia polylepis 112650 Feylinia polylepis Amphiglossus splendidus 135751 Amphiglossus splendidus Parmeosaurus scutatus 4125772 Parmeosaurus scutatus Paramacellodus 4125819 Paramacellodus Adriosaurus suessi Pontosaurus Lepidophyma flavimaculatu 1058304 Lepidophyma flavimaculatum Platecarpus 4946028 Platecarpus Tylosaurus 4945980 Mosasauridae (inconsistent in Squamata (order in Deuterostomia)) Plotosaurus Clidastes 4946012 Clidastes Aigialosaurus dalmaticus 4126044 Aigialosaurus dalmaticus Leptotyphlops 141669 Leptotyphlops Typhlops jamaicensis 630590 Typhlops jamaicensis Haasiophis terrasanctus 4125764 Haasiophis terrasanctus Pachyrhachis problematicus 4946043 Pachyrhachis problematicus Eupodophis descouensis Palaeoxantusia sp. 4124685 Palaeoxantusia Trachyboa boulengeri 886676 Trachyboa boulengeri Tropidophis haetianus 619654 Tropidophis haetianus Anilius scytale 496074 Anilius scytale Anomochilus leonardi 431364 Anomochilus leonardi Uropeltis melanogaster 408639 Uropeltis melanogaster Cylindrophis rufus 642569 Cylindrophis ruffus Loxocemus bicolor 840470 Loxocemus bicolor Python molurus 737826 Python molurus Aspidites melanocephalus 194330 Aspidites melanocephalus Xenopeltis unicolor 323406 Xenopeltis unicolor Xantusia vigilis 139521 Xantusia vigilis Acrochordus granulatus 511702 Acrochordus granulatus Xenodermus javanicus 195297 Xenodermus javanicus Pareas hamptoni 215728 Pareas hamptoni Homalopsis buccata 49551 Homalopsis buccata Lycophidion capense 1044810 Lycophidion capense Atractaspis irregularis 417753 Atractaspis irregularis Aparallactus werneri 769303 Aparallactus werneri Naja 630719 Naja Micrurus fulvius 630720 Micrurus fulvius Laticauda colubrina 109046 Laticauda colubrina Cricosaura typica 661789 Cricosaura typica Notechis scutatus 6132 Notechis scutatus Lampropeltis getula 547409 Lampropeltis getula Coluber constrictor 405963 Coluber constrictor Thamnophis marcianus 107014 Thamnophis marcianus Natrix natrix 1010557 Natrix natrix Afronatrix anoscopus 1074252 Afronatrix anoscopus Xenochrophis piscator 417729 Xenochrophis piscator Amphiesma stolata 642558 Amphiesma stolatum Diadophis punctatus 324337 Diadophis punctatus Causus 498988 Causus Cordylus mossambicus 376018 Smaug mossambicus Daboia russelli 78566 Daboia russelii Agkistrodon contortrix 27080 Agkistrodon contortrix Bothrops asper 27084 Bothrops asper Lachesis muta 755889 Lachesis muta Azemiops feae 705289 Azemiops feae Calabaria reinhardtii 707264 Calabaria reinhardtii Eryx colubrinus 1095908 Eryx colubrinus Epicrates striatus 606172 Chilabothrus striatus Boa constrictor 764377 Boa constrictor Lichanura trivirgata 1072301 Lichanura trivirgata Platysaurus 269287 Platysaurus Exiliboa placata 323411 Exiliboa placata Ungaliophis continentalis 496078 Ungaliophis continentalis Xenophidion acanthognathus 4120218 Xenophidion acanthognathus Casarea dussumieri 1021984 Casarea dussumieri Dinilysia patagonica 4126105 Dinilysia patagonica Najash rionegrina 4126085 Najash rionegrina Liotyphlops albirostris 141673 Liotyphlops albirostris Typhlophis squamosus 233687 Typhlophis squamosus Chamaeleo 737832 Chamaeleo Brookesia brygooi 38286 Brookesia brygooi Zonosaurus ornatus 1024069 Zonosaurus ornatus Uromastyx aegyptus 913390 Uromastyx aegyptia Leiolepis belliana 116297 Leiolepis belliana Hydrosaurus 873950 Hydrosaurus Pogona vitticeps 913382 Pogona vitticeps Physignathus cocincinus 58619 Physignathus cocincinus Agama agama 144931 Agama agama Calotes emma 631607 Calotes emma Priscagama gobiensis 4125848 Priscagama gobiensis Mimeosaurus crassus 4125796 Mimeosaurus crassus Phrynosomimus asper 4125802 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