{"sha": "24afc85a444963f10ca51c6e20138fe592a4b525", "data": {"nexml": {"@about": "#study", "@generator": "Open Tree API", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xhtml": "http://www.w3.org/1999/xhtml/vocab#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "Open Tree NexSON validation", "@id": "peyotl-validator", "@name": "api.opentreeoflife.org/validate", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": [], "otherProperty": [{"name": "pythonVersion", "value": "2.7.9"}, {"name": "pythonImplementation", "value": "CPython"}]}}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0"}]}, "^ot:annotationEvents": {"annotation": [{"@dateCreated": "2016-02-23T13:46:54.635Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"searchContext": {"$": "All life"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}]}, "useFuzzyMatching": false}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2016-02-23T13:46:54.635Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": [{"@filename": "PASTED.tre", "@size": 202, "@type": "newick", "@url": "/curator/download/supporting_files.doc.86d728aef48ad1dd.5041535445442e747265.tre", "description": {"$": "Source data for tree(s) 'tree1'"}, "sourceForTree": [{"$": "tree1"}]}]}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": ["tree1"], "^ot:comment": "Tree was reconstructed from PDF figure found in publication", "^ot:curatorName": ["Christine Ewers-Saucedo"], "^ot:dataDeposit": {"@href": ""}, "^ot:focalCladeOTTTaxonName": "", "^ot:notIntendedForSynthesis": false, "^ot:otusElementOrder": ["otus1"], "^ot:studyId": "ot_645", "^ot:studyPublication": {"@href": "http://dx.doi.org/10.1163/1937240x-00002134"}, "^ot:studyPublicationReference": "Benny K. K. Chan, Hsiu-Chin Lin, Yi-Yang Chen, 2013, 'Biodiversity and host specificity of coral barnacles of Galkinia (Cirripedia: Pyrgomatidae) in Taiwan, with descriptions of six new species', Journal of Crustacean Biology, vol. 33, no. 3, pp. 392-431", "^ot:studyYear": 2013, "^ot:tag": [], "^ot:treesElementOrder": ["trees1"], "otusById": {"otus1": {"otuById": {"otu1": {"^ot:originalLabel": "Hiroa stubbingsi", "^ot:ottId": 588438, "^ot:ottTaxonName": "Hiroa stubbingsi"}, "otu10": {"^ot:originalLabel": "Galkinia altiapiculus", "^ot:ottId": 674880, "^ot:ottTaxonName": "Galkinius altiapiculus"}, "otu2": {"^ot:originalLabel": "Cionophorus soongi", "^ot:ottId": 222399, "^ot:ottTaxonName": "Cionophorus soongi"}, "otu3": {"^ot:originalLabel": "Galkinia indica", "^ot:ottId": 222402, "^ot:ottTaxonName": "Galkinius indicus"}, "otu4": {"^ot:originalLabel": "Galkinia trimegadonta", "^ot:ottId": 151794, "^ot:ottTaxonName": "Galkinius trimegadontus"}, "otu5": {"^ot:originalLabel": "Galkinia decima", "^ot:ottId": 671369, "^ot:ottTaxonName": "Galkinius decimus"}, "otu6": {"^ot:originalLabel": "Galkinia adamanteus", "^ot:ottId": 4678509, "^ot:ottTaxonName": "Galkinius adamanteus"}, "otu7": {"^ot:originalLabel": "Galkinia equus", "^ot:ottId": 751059, "^ot:ottTaxonName": "Galkinius equus"}, "otu8": {"^ot:originalLabel": "Galkinia tabulatus", "^ot:ottId": 151795, "^ot:ottTaxonName": "Galkinius tabulatus"}, "otu9": {"^ot:originalLabel": "Galkinia depressa", "^ot:ottId": 751027, "^ot:ottTaxonName": "Galkinius depressus"}}}}, "treesById": {"trees1": {"@otus": "otus1", "^ot:treeElementOrder": ["tree1"], "treeById": {"tree1": {"@label": "Fig. 2", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:undefined", "^ot:branchLengthTimeUnit": "Myr", "^ot:curatedType": "Maximum likelihood ", "^ot:inGroupClade": "node5", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:rootNodeId": "node1", "^ot:specifiedRoot": "node1", "^ot:tag": [], "^ot:unrootedTree": false, "edgeBySourceId": {"node1": {"edge1": {"@source": "node1", "@target": "node2"}, "edge4": {"@source": "node1", "@target": "node5"}}, "node10": {"edge10": {"@source": "node10", "@target": "node11"}, "edge11": {"@source": "node10", "@target": "node12"}}, "node12": {"edge12": {"@source": "node12", "@target": "node13"}, "edge13": {"@source": "node12", "@target": "node14"}}, "node15": {"edge15": {"@source": "node15", "@target": "node16"}, "edge16": {"@source": "node15", "@target": "node17"}}, "node17": {"edge17": {"@source": "node17", "@target": "node18"}, "edge18": {"@source": "node17", "@target": "node19"}}, "node2": {"edge2": {"@source": "node2", "@target": "node3"}, "edge3": {"@source": "node2", "@target": "node4"}}, "node5": {"edge14": {"@source": "node5", "@target": "node15"}, "edge5": {"@source": "node5", "@target": "node6"}}, "node6": {"edge6": {"@source": "node6", "@target": "node7"}, "edge7": {"@source": "node6", "@target": "node8"}}, "node8": {"edge8": {"@source": "node8", "@target": "node9"}, "edge9": {"@source": "node8", "@target": "node10"}}}, "nodeById": {"node1": {"@root": true}, "node10": {}, "node11": {"@otu": "otu5"}, "node12": {}, "node13": {"@otu": "otu6"}, "node14": {"@otu": "otu7"}, "node15": {}, "node16": {"@otu": "otu8"}, "node17": {}, "node18": {"@otu": "otu9"}, "node19": {"@otu": "otu10"}, "node2": {}, "node3": {"@otu": "otu1"}, "node4": {"@otu": "otu2"}, "node5": {}, "node6": {}, "node7": {"@otu": "otu3"}, "node8": {}, "node9": {"@otu": "otu4"}}}}}}}}, "branch2sha": {"master": "24afc85a444963f10ca51c6e20138fe592a4b525"}, "commentHTML": "<p>Tree was reconstructed from PDF figure found in publication</p>", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "832470c6d32c41b44e673b25de68358e2e4b1787", "author_name": "Christine Ewers-Saucedo", "author_email": "ANONYMOUS", "date": "Tue, 23 Feb 2016 13:50:58 +0000", "date_ISO_8601": "2016-02-23 13:50:58 +0000", "relative_date": "10 years ago", "message_subject": "Update document 'ot_645' via OpenTree API"}, {"id": "6c28481d97018b06bcc0c90c303423f1184bc9b0", "author_name": "Christine Ewers-Saucedo", "author_email": "ANONYMOUS", "date": "Tue, 23 Feb 2016 13:46:54 +0000", "date_ISO_8601": "2016-02-23 13:46:54 +0000", "relative_date": "10 years ago", "message_subject": "Update document 'ot_645' via OpenTree API"}]}