#NEXUS
BEGIN TAXA;
    Dimensions NTax = 150;
    TaxLabels 'Bodo saltans' 'Kinetoplastea-Neobodo designis' 'Euglenozoa Euglenida-Eutreptiella gymnastica' 'Naegleria gruberi' 'Sawyeria marylandensis' 'Percolomonas cosmopolitusMMETSP0758' 'Percolomonas cosmopolitusMMETSP0759' 'Tsukubamonas globosa' Jakoba 'Reclinomonas americana' 'Seculamonas ecuadoriensis' 'Astrolonche serrata' 'Elphidium margaritaceum' 'Reticulomyxa filosa' 'Gromia sphaerica' 'Bigelowiella natans' 'Chlorarachnion reptans' 'Aurantiochytrium limacinum' 'Labyrinthista Labyrinthulea-Thraustochytrium sp' 'Schizochytrium aggregatum' Aplanochytrium MAST4 'Aureococcus anophageferrens' 'Ochrophyta Pelagophyceae-Pelagomonas calceolata' 'Ochrophyta Pelagophyceae-Aureoumbra lagunensis' 'Ochrophyta Dictyochophyceae-Dictyocha speculum' 'Ochrophyta Dictyochophyceae-Pseudopedinella elastica' 'Ochrophyta Dictyochophyceae-Rhizochromulina marina' 'Bacillariophyta Coscinodiscophyceae-Odontella aurita' 'Bacillariophyta Fragilariophyceae-Asterionellopsis glacialis' 'Phaeodactylum tricornutum' 'Thalassiosira pseudonana' 'Ochrophyta Bolidophyceae-Bolidomonas pacifica' 'Ectocarpus siliculosus' 'Ochrophyta Xanthophyceae-Vaucheria litorea' 'Ochrophyta Raphidophyceae-Chattonella subsalsa' 'Ochrophyta Raphidophyceae-Heterosigma akashiwo' 'Ochrophyta Raphidophyceae-Fibrocapsa japonica' 'Nannochloropsis gaditana' 'Ochrophyta Chrysophyceae-Paraphysomonas imperforata' 'Ochrophyta Chrysophyceae-Spumella elongata' 'Ochrophyta Synurophyceae-Ochromonas spMMETSP1177' 'Ochrophyta Synurophyceae-Mallomonas sp' 'Ochrophyta Dictyochophyceae-Pinguiococcus pyrenoidosus' 'Ochrophyta Pinguiophyceae-Phaeomonas parva' Phytophthora 'Saprolegnia parasitica' 'Bicosoecida Bicosoecophyceae-Cafeteria roebergensis' 'Bicosoecida Bicosoecophyceae-Cafeteria sp' 'Blastocystis hominis' 'Babesia bovis' 'Plasmodium falciparum' 'Toxoplasma gondii' 'Cryptosporidium muris' 'Chromera velia' Colpodella 'Voromonas pontica GG' 'Vitrella brassicaformis' 'Dinophyta Dinophyceae-Amphidinium carterae' 'Dinophyta Dinophyceae-Karenia brevis' 'Noctiluca scintillans' 'Hematodinium sp' 'Perkinsus marinus' 'Ciliophora Colopdea Platyophryidae Platyophrya macrostoma WH' 'Paramecium tetraurelia' 'Tetrahymena thermophila' 'Ciliophora Litostomatea Litonotidae Litonotus pictus P1' Euplotes 'Ciliophora Spirotrichea Strombidiidae Strombidium inclinatum S3' 'Sterkiella histriomuscorum' 'Ciliophora Spirotrichea Protocruziidae Protocruzia adherens Boccale' Telonema 'Emiliania huxleyi' 'Haptophyta Prymnesiophyceae-Isochrysis galbana' 'Haptophyta Coccolithophyceae-Scyphosphaera apsteinii' 'Haptophyta Prymnesiophyceae-Calcidiscus leptoporus' 'Haptophyta Prymnesiophyceae-Pleurochrysis carterae' 'Haptophyta Prymnesiophyceae-Chrysochromulina brevifilum' 'Haptophyta Prymnesiophyceae-Chrysochromulina polylepis' 'Haptophyta Prymnesiophyceae-Prymnesium parvum' 'Haptophyta Prymnesiophyceae-Phaeocystis antarctica' 'Haptophyta Prymnesiophyceae-Phaeocystis sp' 'Haptophyta Prymnesiophyceae-Chrysoculter rhomboideus' 'Pavlovales sp' HF20 HF7 'Raineriophrys erinaceoides' 'Raphidiophrys ambigua' 'Raphidiophrys heterophryoidea' Arabidopsis 'Populus trichocarpa' 'Mimulus guttatus' 'Brachypodium distachyon' 'Oryza sativa' 'Physcomitrella patens' 'Selaginella moellendorffii' 'Chlamydomonas reinhardtii' 'Volvox carteri' 'Chlorella vulgaris' 'Coccomyxa sp' 'Micromonas sp' 'Ostreococcus lucimarinus' 'Cyanophora paradoxa' 'Gloeochaete witrockiana' 'Cyanoptyche gloeocystis' 'Cryptophyceae sp' 'Cryptophyta Cryptophyceae-Rhodomonas abbreviata' 'Cryptophyta Cryptophyceae-Rhodomonas sp' 'Guillardia theta' 'Cryptophyta Cryptophyceae-Hemiselmis andersenii' 'Cryptophyta Cryptophyceae-Hemiselmis rufescens' 'Cryptophyta Cryptophyceae-Cryptomonas curvata' 'Cryptophyta Cryptophyceae-Goniomonas pacifica' 'Cryptophyta Cryptophyceae-Goniomonas sp' 'Roombia truncata' 'Palpitomonas bilix' 'Picobiliphyte MS584-11' 'Cyanidioschyzon merolae' 'Galdieria sulphuraria' 'Compsopogon coeruleus' 'Rhodophyta Compsopogonophyceae-Madagascaria erythrocladoides' 'Porphyridium aerugineum' 'Porphyridium cruentum' Erythrolobus 'Chondrus crispus' Porphyra 'Rhodophyta Rhodellophyceae-Rhodella maculata' 'Rhodophyta Rhodellophyceae-Rhodosorus marinus' Malawimonas 'Acanthamoeba castellanii' 'Dictyostelium discoideum' 'Dictyostelium purpureum' 'Polysphondylium pallidum' 'Collodictyon sp' 'Batrachochytrium dendrobatidis' 'Cryptococcus neoformans' 'Ustilago maydis' 'Neurospora crassa' 'Schizosaccharomyces pompe' 'Phycomyces blakesleeanus' 'Branchiostoma floridae' 'Danio rerio' 'Homo sapiens' 'Daphnia pulex' 'Lottia gigantea' 'Nematostella vectensis' 'Monosiga brevicollis' Breviate 'Amastigomonas sp' 'Thecamonas trahens' ;
END;
BEGIN TREES;
    Tree tree1 = ((((((('Bodo saltans':0.297517,'Kinetoplastea-Neobodo designis':0.323437):0.512585,'Euglenozoa Euglenida-Eutreptiella gymnastica':0.398213):0.179002,(('Naegleria gruberi':0.382953,'Sawyeria marylandensis':0.562495):0.040716,('Percolomonas cosmopolitusMMETSP0758':0.484729,'Percolomonas cosmopolitusMMETSP0759':0.356394):0.216777):0.147071):0.027738,'Tsukubamonas globosa':0.387977):0.01473,(Jakoba:0.313054,('Reclinomonas americana':0.270319,'Seculamonas ecuadoriensis':0.218887):0.032633):0.241761):0.055547,((((((('Astrolonche serrata':0.612441,('Elphidium margaritaceum':0.269455,'Reticulomyxa filosa':0.289584):0.299454):0.156897,'Gromia sphaerica':0.407831):0.053402,('Bigelowiella natans':0.10065,'Chlorarachnion reptans':0.085936):0.383884):0.094352,(((((('Aurantiochytrium limacinum':0.186951,('Labyrinthista Labyrinthulea-Thraustochytrium sp':0.130254,'Schizochytrium aggregatum':0.106971):0.065349):0.10377,Aplanochytrium:0.227272):0.150053,MAST4:0.483657):0.041029,((((((('Aureococcus anophageferrens':0.070166,'Ochrophyta Pelagophyceae-Pelagomonas calceolata':0.11489):0.078158,'Ochrophyta Pelagophyceae-Aureoumbra lagunensis':0.222897):0.163263,('Ochrophyta Dictyochophyceae-Dictyocha speculum':0.148428,('Ochrophyta Dictyochophyceae-Pseudopedinella elastica':0.168852,'Ochrophyta Dictyochophyceae-Rhizochromulina marina':0.130382):0.050571):0.105762):0.041261,((('Bacillariophyta Coscinodiscophyceae-Odontella aurita':0.099854,('Bacillariophyta Fragilariophyceae-Asterionellopsis glacialis':0.084183,'Phaeodactylum tricornutum':0.152622):0.041399):0.01973,'Thalassiosira pseudonana':0.11831):0.114823,'Ochrophyta Bolidophyceae-Bolidomonas pacifica':0.214053):0.151544):0.017261,((('Ectocarpus siliculosus':0.152573,'Ochrophyta Xanthophyceae-Vaucheria litorea':0.245262):0.068897,(('Ochrophyta Raphidophyceae-Chattonella subsalsa':0.057163,'Ochrophyta Raphidophyceae-Heterosigma akashiwo':0.10047):0.091129,'Ochrophyta Raphidophyceae-Fibrocapsa japonica':0.147991):0.063632):0.02518,'Nannochloropsis gaditana':0.29112):0.012817):0.010811,((('Ochrophyta Chrysophyceae-Paraphysomonas imperforata':0.184462,('Ochrophyta Chrysophyceae-Spumella elongata':0.137955,'Ochrophyta Synurophyceae-Ochromonas spMMETSP1177':0.115512):0.046666):0.022484,'Ochrophyta Synurophyceae-Mallomonas sp':0.1539):0.16774,('Ochrophyta Dictyochophyceae-Pinguiococcus pyrenoidosus':0.086738,'Ochrophyta Pinguiophyceae-Phaeomonas parva':0.058922):0.290222):0.025994):0.060389,(Phytophthora:0.102289,'Saprolegnia parasitica':0.116315):0.176916):0.048941):0.015041,('Bicosoecida Bicosoecophyceae-Cafeteria roebergensis':0.664517,('Bicosoecida Bicosoecophyceae-Cafeteria sp':0.326112,'Blastocystis hominis':0.703346):0.039304):0.03418):0.06998,(((((('Babesia bovis':0.529914,'Plasmodium falciparum':0.541515):0.10765,'Toxoplasma gondii':0.30513):0.067261,'Cryptosporidium muris':0.507412):0.07535,(('Chromera velia':0.253501,(Colpodella:0.523935,'Voromonas pontica GG':0.220486):0.048697):0.078324,'Vitrella brassicaformis':0.264113):0.026076):0.051882,(((('Dinophyta Dinophyceae-Amphidinium carterae':0.154253,'Dinophyta Dinophyceae-Karenia brevis':0.146364):0.034202,'Noctiluca scintillans':0.1726):0.140002,'Hematodinium sp':0.308409):0.076525,'Perkinsus marinus':0.395632):0.078602):0.139796,((('Ciliophora Colopdea Platyophryidae Platyophrya macrostoma WH':0.371237,('Paramecium tetraurelia':0.422371,'Tetrahymena thermophila':0.365673):0.119833):0.178187,('Ciliophora Litostomatea Litonotidae Litonotus pictus P1':0.830198,(Euplotes:0.441752,('Ciliophora Spirotrichea Strombidiidae Strombidium inclinatum S3':0.341772,'Sterkiella histriomuscorum':0.179462):0.146367):0.128078):0.062116):0.033985,'Ciliophora Spirotrichea Protocruziidae Protocruzia adherens Boccale':0.421003):0.123405):0.081695):0.015419):0.022277,Telonema:0.572853):0.012758,(((((('Emiliania huxleyi':0.067384,'Haptophyta Prymnesiophyceae-Isochrysis galbana':0.063081):0.074842,('Haptophyta Coccolithophyceae-Scyphosphaera apsteinii':0.079612,('Haptophyta Prymnesiophyceae-Calcidiscus leptoporus':0.060643,'Haptophyta Prymnesiophyceae-Pleurochrysis carterae':0.05857):0.029704):0.021274):0.0403,('Haptophyta Prymnesiophyceae-Chrysochromulina brevifilum':0.121107,('Haptophyta Prymnesiophyceae-Chrysochromulina polylepis':0.050404,'Haptophyta Prymnesiophyceae-Prymnesium parvum':0.043676):0.059537):0.033755):0.016664,('Haptophyta Prymnesiophyceae-Phaeocystis antarctica':0.017658,'Haptophyta Prymnesiophyceae-Phaeocystis sp':0.015025):0.113127):0.130504,('Haptophyta Prymnesiophyceae-Chrysoculter rhomboideus':0.075887,'Pavlovales sp':0.110545):0.184244):0.141786,(HF20:0.217959,(HF7:0.196174,('Raineriophrys erinaceoides':0.176635,('Raphidiophrys ambigua':0.129067,'Raphidiophrys heterophryoidea':0.09447):0.092574):0.023886):0.020835):0.277525):0.028748):0.010214,((((((((Arabidopsis:0.080562,'Populus trichocarpa':0.053145):0.011184,'Mimulus guttatus':0.066876):0.021697,('Brachypodium distachyon':0.035661,'Oryza sativa':0.023383):0.070739):0.075678,('Physcomitrella patens':0.097062,'Selaginella moellendorffii':0.124895):0.022622):0.113025,((('Chlamydomonas reinhardtii':0.041816,'Volvox carteri':0.035108):0.188801,('Chlorella vulgaris':0.196172,'Coccomyxa sp':0.165845):0.037876):0.077154,('Micromonas sp':0.137341,'Ostreococcus lucimarinus':0.208803):0.186882):0.037076):0.127542,(('Cyanophora paradoxa':0.173285,'Gloeochaete witrockiana':0.147081):0.02487,'Cyanoptyche gloeocystis':0.167594):0.109124):0.01989,((((((('Cryptophyceae sp':0.114267,('Cryptophyta Cryptophyceae-Rhodomonas abbreviata':0.038306,'Cryptophyta Cryptophyceae-Rhodomonas sp':0.045227):0.049997):0.013818,'Guillardia theta':0.103745):0.028006,('Cryptophyta Cryptophyceae-Hemiselmis andersenii':0.015944,'Cryptophyta Cryptophyceae-Hemiselmis rufescens':0.01456):0.110519):0.016621,'Cryptophyta Cryptophyceae-Cryptomonas curvata':0.099275):0.194476,('Cryptophyta Cryptophyceae-Goniomonas pacifica':0.174264,'Cryptophyta Cryptophyceae-Goniomonas sp':0.125922):0.125331):0.074328,'Roombia truncata':0.295831):0.034618,'Palpitomonas bilix':0.455272):0.041555):0.011648,('Picobiliphyte MS584-11':0.521943,(('Cyanidioschyzon merolae':0.570616,'Galdieria sulphuraria':0.315922):0.045786,((('Compsopogon coeruleus':0.199476,'Rhodophyta Compsopogonophyceae-Madagascaria erythrocladoides':0.177582):0.065398,(('Porphyridium aerugineum':0.131231,'Porphyridium cruentum':0.182673):0.035891,Erythrolobus:0.140581):0.146763):0.026346,(('Chondrus crispus':0.268016,Porphyra:0.280509):0.061491,('Rhodophyta Rhodellophyceae-Rhodella maculata':0.313996,'Rhodophyta Rhodellophyceae-Rhodosorus marinus':0.321352):0.022637):0.016584):0.064231):0.145236):0.027608):0.012389):0.013059):0.02355,((Malawimonas:0.433909,(('Acanthamoeba castellanii':0.309033,(('Dictyostelium discoideum':0.054198,'Dictyostelium purpureum':0.05542):0.089096,'Polysphondylium pallidum':0.12616):0.325681):0.018398,'Collodictyon sp':0.394223):0.01484):0.01338,((('Batrachochytrium dendrobatidis':0.257513,((('Cryptococcus neoformans':0.254848,'Ustilago maydis':0.218086):0.102907,('Neurospora crassa':0.333285,'Schizosaccharomyces pompe':0.308897):0.078713):0.047145,'Phycomyces blakesleeanus':0.207389):0.039903):0.119366,(((('Branchiostoma floridae':0.133099,('Danio rerio':0.057617,'Homo sapiens':0.056513):0.096132):0.019568,('Daphnia pulex':0.220714,'Lottia gigantea':0.181336):0.0248):0.028487,'Nematostella vectensis':0.153029):0.089005,'Monosiga brevicollis':0.398318):0.086371):0.049008,(Breviate:0.474547,('Amastigomonas sp':0.338465,'Thecamonas trahens':0.30597):0.246569):0.026564):0.01432));
END;