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Tikhonenkov, Vasily Zlatogursky, Bui Quang Minh, Liudmila V. Radaykina, Alexey Smirnov, Alexander P. Mylnikov, Patrick J. Keeling, 2016, 'Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista', Proceedings of the Royal Society B: Biological Sciences, vol. 283, no. 1823, p. 20152802 2016 Acanthamoeba castellanii 120245 Acanthamoeba castellanii Phycomyces blakesleeanus 735973 Phycomyces blakesleeanus Chromera velia 215573 Chromera velia Colpodella 737183 Colpodella Voromonas pontica GG 537591 Voromonas pontica Vitrella brassicaformis 818325 Vitrella brassicaformis Dinophyta Dinophyceae-Amphidinium carterae 746949 Amphidinium carterae Dinophyta Dinophyceae-Karenia brevis 93910 Karenia brevis Noctiluca scintillans 746947 Noctiluca scintillans Hematodinium sp 845949 Hematodinium Perkinsus marinus 438694 Perkinsus marinus Ciliophora Colopdea Platyophryidae Platyophrya macrostoma WH 756780 Platyophrya macrostoma Branchiostoma floridae 176532 Branchiostoma floridae Paramecium tetraurelia 568130 Paramecium tetraurelia Tetrahymena thermophila 180195 Tetrahymena thermophila Ciliophora Litostomatea Litonotidae Litonotus pictus P1 642971 Litonotus pictus Euplotes 231098 Euplotes Ciliophora Spirotrichea Strombidiidae Strombidium inclinatum S3 509918 Strombidium inclinatum Sterkiella histriomuscorum 141076 Sterkiella histriomuscorum Protocruzia adherens Boccale Ciliophora Spirotrichea Protocruziidae Protocruzia adherens Boccale Telonema 4738974 Telonema Emiliania huxleyi 695761 Emiliania huxleyi Haptophyta Prymnesiophyceae-Isochrysis galbana 955647 Isochrysis galbana Danio rerio 1005914 Danio rerio Haptophyta Coccolithophyceae-Scyphosphaera apsteinii 978488 Scyphosphaera apsteinii Haptophyta Prymnesiophyceae-Calcidiscus leptoporus 507210 Calcidiscus leptoporus Haptophyta Prymnesiophyceae-Pleurochrysis carterae 907495 Pleurochrysis carterae Haptophyta Prymnesiophyceae-Chrysochromulina brevifilum 226269 Haptolina brevifila Haptophyta Prymnesiophyceae-Chrysochromulina polylepis 698605 Prymnesium polylepis Haptophyta Prymnesiophyceae-Prymnesium parvum 937580 Prymnesium parvum Haptophyta Prymnesiophyceae-Phaeocystis antarctica 215713 Phaeocystis antarctica Haptophyta Prymnesiophyceae-Phaeocystis sp 215712 Phaeocystis Haptophyta Prymnesiophyceae-Chrysoculter rhomboideus 4023372 Chrysoculter rhomboideus Pavlovales sp 488592 Pavlovales (merged with Pavlova) Homo sapiens 770315 Homo sapiens HF20 901748 Acanthocystis HF7 631183 Choanocystis Raineriophrys erinaceoides 901743 Raineriophrys erinaceoides Raphidiophrys ambigua 607131 Raphidiophrys ambigua Raphidiophrys heterophryoidea 5923989 Raphidiophrys heterophryoidea Bodo saltans 722598 Bodo saltans Kinetoplastea-Neobodo designis 606323 Neobodo designis Euglenozoa Euglenida-Eutreptiella gymnastica Naegleria gruberi 641873 Naegleria gruberi Sawyeria marylandensis 801124 Sawyeria marylandensis Daphnia pulex 59086 Daphnia pulex Percolomonas cosmopolitusMMETSP0758 Percolomonas cosmopolitusMMETSP0759 Tsukubamonas globosa 4739013 Tsukubamonas 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Coccomyxa sp Micromonas sp 395943 Micromonas Thecamonas trahens 418774 Thecamonas trahens Ostreococcus lucimarinus 851102 Ostreococcus 'lucimarinus' Cyanophora paradoxa 878960 Cyanophora paradoxa Gloeochaete witrockiana 142555 Gloeochaete wittrockiana (species in domain Eukaryota) Cyanoptyche gloeocystis 801157 Cyanoptyche gloeocystis Cryptophyceae sp 5246159 Cryptophyceae Cryptophyta Cryptophyceae-Rhodomonas abbreviata 492542 Rhodomonas abbreviata Cryptophyta Cryptophyceae-Rhodomonas sp 955642 Rhodomonas Guillardia theta 5247740 Guillardia theta Cryptophyta Cryptophyceae-Hemiselmis andersenii 824459 Hemiselmis andersenii Cryptophyta Cryptophyceae-Hemiselmis rufescens 801161 Hemiselmis rufescens Breviate Cryptophyta Cryptophyceae-Cryptomonas curvata 852291 Cryptomonas curvata Cryptophyta Cryptophyceae-Goniomonas pacifica 324268 Goniomonas pacifica Cryptophyta Cryptophyceae-Goniomonas sp 914449 Goniomonas Roombia truncata 265799 Roombia truncata Palpitomonas bilix 4739017 Palpitomonas bilix Chondrus crispus 878946 Chondrus crispus Porphyra 726205 Porphyra Rhodophyta Rhodellophyceae-Rhodella maculata 559589 Rhodella maculata Rhodophyta Rhodellophyceae-Rhodosorus marinus 668452 Rhodosorus marinus Compsopogon coeruleus 339611 Compsopogon caeruleus Batrachochytrium dendrobatidis 858873 Batrachochytrium dendrobatidis Madagascaria erythrocladoides Rhodophyta Compsopogonophyceae-Madagascaria erythrocladoides Porphyridium aerugineum 202890 Porphyridium aerugineum Porphyridium cruentum 432894 Porphyridium purpureum Erythrolobus 1097367 Erythrolobus Cyanidioschyzon merolae 85503 Cyanidioschyzon merolae Galdieria sulphuraria 369285 Galdieria sulphuraria Picobiliphyte MS584-11 Astrolonche serrata 4918041 Astrolonche serrata Elphidium margaritaceum 930595 Elphidium margaritaceum Reticulomyxa filosa 434296 Reticulomyxa filosa Cryptococcus neoformans 634633 Cryptococcus neoformans Gromia sphaerica 721105 Gromia sphaerica Bigelowiella natans 5260606 Bigelowiella natans 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true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true 100 100 50 100 100 100 100 100 100 100 96 96 78 93 100 100 98 100 100 100 64 100 92 100 100 100 100 100 100 59 92 100 100 100 100 100 100 100 98 100 78 100 100 100 100 92 100 96 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 94 99 100 93 96 99 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 99 100 97 100 100 100 93 100 100 100 100 100 100 100 59 100 61 83 90 92 100 100 92 100 100 100 100 100 100 100 100 100 100 100 100 87 100