{"sha": "2aa180baef3c5e313da1e7f09c83ce2c0467b457", "data": {"nexml": {"@generator": "org.nexml.model.impl.DocumentImpl", "@id": "S12832", "@nexml2json": "1.2.1", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "dc": "http://purl.org/dc/elements/1.1/", "dcterms": "http://purl.org/dc/terms/", "nex": "http://www.nexml.org/2009", "prism": "http://prismstandard.org/namespaces/1.2/basic/", "rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#", "rdfs": "http://www.w3.org/2000/01/rdf-schema#", "skos": "http://www.w3.org/2004/02/skos/core#", "tb": "http://purl.org/phylo/treebase/2.0/terms#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^dc:contributor": ["Jones C.M.", "Ando Y.", "Fordyce R.", "Ksepka D."], "^dc:creator": "Ksepka D., Fordyce R., Ando Y., & Jones C.M.", "^dc:date": "2012-06-15", "^dc:publisher": "Journal of Vertebrate Paleontology", "^dc:title": "New fossil penguins (Aves, Sphenisciformes) from the Oligocene of New Zealand reveal the skeletal plan of stem penguins", "^dcterms:bibliographicCitation": "Ksepka D., Fordyce R., Ando Y., & Jones C.M. 2012. New fossil penguins (Aves, Sphenisciformes) from the Oligocene of New Zealand reveal the skeletal plan of stem penguins. Journal of Vertebrate Paleontology, 32(2): 235-254.", "^ot:agents": {"agent": [{"@description": "Open Tree NexSON validation", "@id": "peyotl-validator", "@name": "api.opentreeoflife.org/validate", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": [], "otherProperty": [{"name": "pythonVersion", "value": "2.7.9"}, {"name": "pythonImplementation", "value": "CPython"}]}}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0"}]}, "^ot:annotationEvents": {"annotation": [{"@dateCreated": "2016-09-02T20:22:43.081Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"searchContext": {"$": "Birds"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}]}, "useFuzzyMatching": false}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2016-09-02T20:22:43.081Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": []}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "UNRECOGNIZED_KEY", "data": ["^dc:contributor", "^dc:creator", "^dc:date", "^dc:publisher", "^dc:title", "^dcterms:bibliographicCitation", "^ot:comment", "^prism:creationDate", "^prism:doi", "^prism:endingPage", "^prism:modificationDate", "^prism:number", "^prism:pageRange", "^prism:publicationDate", "^prism:publicationName", "^prism:section", "^prism:startingPage", "^prism:volume", "^skos:changeNote", "^skos:historyNote", "^tb:identifier.study", "^tb:title.study"], "refersTo": {"@top": "nexml", "@idref": "S12832"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "Tb17682", "@treesID": "Tb17682"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^skos:historyNote"], "refersTo": {"@top": "trees", "@idref": "Tb17682", "@treesID": "Tb17682"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^skos:prefLabel"], "refersTo": {"@top": "otus", "@idref": "Tl815856", "@otusID": "Tls26331", "@otuID": "Tl815856"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "otus", "@idref": "Tls26331", "@otusID": "Tls26331"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["Tl815813", "Tl815836"], "refersTo": {"@top": "otus", "@idref": "Tls26331", "@otusID": "Tls26331"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^skos:historyNote"], "refersTo": {"@top": "otus", "@idref": "Tls26331", "@otusID": "Tls26331"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:branchLengthTimeUnit"], "refersTo": {"@top": "trees", "@idref": "Tr53559", "@treesID": "Tb17682", "@treeID": "Tr53559"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit", "^tb:kind.tree", "^tb:ntax.tree", "^tb:quality.tree", "^tb:type.tree"], "refersTo": {"@top": "trees", "@idref": "Tr53559", "@treesID": "Tb17682", "@treeID": "Tr53559"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:ottId"], "refersTo": {"@top": "otus", "@idref": ["Tl815805", "Tl815808", "Tl815809", "Tl815811", "Tl815813", "Tl815814", "Tl815815", "Tl815816", "Tl815817", "Tl815818", "Tl815819", "Tl815820", "Tl815821", "Tl815823", "Tl815825", "Tl815826", "Tl815827", "Tl815828", "Tl815830", "Tl815832", "Tl815833", "Tl815834", "Tl815836", "Tl815837", "Tl815840", "Tl815842", "Tl815843", "Tl815844", "Tl815846", "Tl815849", "Tl815850", "Tl815851", "Tl815852", "Tl815853", "Tl815854", "Tl815855", "Tl815857", "Tl815859", "Tl815860", "Tl815861", "Tl815862", "Tl815863", "Tl815865", "Tl815866", "Tl815867", "Tl815868", "Tl815869", "Tl815870", "Tl815871", "Tl815872", "Tl815873"], "@otusID": "Tls26331", "@otuID": ["Tl815805", "Tl815808", "Tl815809", "Tl815811", "Tl815813", "Tl815814", "Tl815815", "Tl815816", "Tl815817", "Tl815818", "Tl815819", "Tl815820", "Tl815821", "Tl815823", "Tl815825", "Tl815826", "Tl815827", "Tl815828", "Tl815830", "Tl815832", "Tl815833", "Tl815834", "Tl815836", "Tl815837", "Tl815840", "Tl815842", "Tl815843", "Tl815844", "Tl815846", "Tl815849", "Tl815850", "Tl815851", "Tl815852", "Tl815853", "Tl815854", "Tl815855", "Tl815857", "Tl815859", "Tl815860", "Tl815861", "Tl815862", "Tl815863", "Tl815865", "Tl815866", "Tl815867", "Tl815868", "Tl815869", "Tl815870", "Tl815871", "Tl815872", "Tl815873"]}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": ["Tr53559"], "^ot:comment": "", "^ot:curatorName": ["ningwang83"], "^ot:dataDeposit": {"@href": "http://purl.org/phylo/treebase/phylows/study/TB2:S12832"}, "^ot:focalClade": 494366, "^ot:focalCladeOTTTaxonName": "Sphenisciformes", "^ot:notIntendedForSynthesis": false, "^ot:otusElementOrder": ["Tls26331"], "^ot:studyId": "ot_786", "^ot:studyPublication": {"@href": "http://dx.doi.org/10.1080/02724634.2012.652051"}, "^ot:studyPublicationReference": "Ksepka D., Fordyce R., Ando Y., & Jones C.M. 2012. New fossil penguins (Aves, Sphenisciformes) from the Oligocene of New Zealand reveal the skeletal plan of stem penguins. Journal of Vertebrate Paleontology, 32(2): 235-254.", "^ot:studyYear": 2012, "^ot:tag": [], "^ot:taxonLinkPrefixes": {"@ubio": "http://www.ubio.org/authority/metadata.php?lsid=urn:lsid:ubio.org:namebank:", "@uniprot": "http://purl.uniprot.org/taxonomy/"}, "^ot:treesElementOrder": ["Tb17682"], "^prism:creationDate": "2012-06-12", "^prism:doi": "10.1080/02724634.2012.652051", "^prism:endingPage": "254", "^prism:modificationDate": "2012-06-15", "^prism:number": "2", "^prism:pageRange": "235-254", "^prism:publicationDate": "2012", "^prism:publicationName": "Journal of Vertebrate Paleontology", "^prism:section": "Study", "^prism:startingPage": "235", "^prism:volume": "32", "^skos:changeNote": "Generated on Fri Sep 02 20:22:26 UTC 2016", "^skos:historyNote": "Mapped from TreeBASE schema using org.cipres.treebase.domain.nexus.nexml.NexmlDocumentWriter@3bcf861b $Rev: 1060 $", "^tb:identifier.study": "12832", "^tb:title.study": "New fossil penguins (Aves, Sphenisciformes) from the Oligocene of New Zealand reveal the skeletal plan of stem penguins", "otusById": {"Tls26331": {"@label": "Taxa", "^skos:historyNote": "Mapped from TreeBASE schema using org.cipres.treebase.domain.nexus.nexml.NexmlOTUWriter@40ab82e0 $Rev: 1040 $", "otuById": {"Tl815805": {"^ot:originalLabel": "Phoebastria immutabilis", "^ot:taxonLink": {"@tb:identifier.taxon": 9137, "@tb:identifier.taxonVariant": 50864, "@ubio": "3851986", "@uniprot": "54020"}}, "Tl815806": {"^ot:originalLabel": "Eudyptes pachyrhynchus", "^ot:ottId": 976561, "^ot:ottTaxonName": "Eudyptes pachyrhynchus", "^ot:taxonLink": {"@tb:identifier.taxon": 10787, "@tb:identifier.taxonVariant": 25832, "@ubio": "3851885", "@uniprot": "37080"}}, "Tl815807": {"^ot:originalLabel": "Palaeospheniscus patagonicus", "^ot:ottId": 4130848, "^ot:ottTaxonName": "Palaeospheniscus patagonicus"}, "Tl815808": {"^ot:originalLabel": "Macronectes giganteus", "^ot:taxonLink": {"@tb:identifier.taxon": 16692, "@tb:identifier.taxonVariant": 39101, "@ubio": "3851901", "@uniprot": "37057"}}, "Tl815809": {"^ot:originalLabel": "Icadyptes salasi"}, "Tl815810": {"^ot:originalLabel": "Eudyptes filholi", "^ot:ottId": 3600097, "^ot:ottTaxonName": "Eudyptes filholi"}, "Tl815811": {"^ot:originalLabel": "Pterodroma brevirostris", "^ot:taxonLink": {"@tb:identifier.taxon": 62354, "@tb:identifier.taxonVariant": 136467, "@ubio": "12240", "@uniprot": "37064"}}, "Tl815812": {"^ot:originalLabel": "Eudyptes robustus", "^ot:ottId": 219197, "^ot:ottTaxonName": "Eudyptes robustus", "^ot:taxonLink": {"@tb:identifier.taxon": 302884, "@tb:identifier.taxonVariant": 351578, "@ubio": "3851886", "@uniprot": "345251"}}, "Tl815813": {"^ot:originalLabel": "Palaeospheniscus biloculata"}, "Tl815814": {"^ot:originalLabel": "Platydyptes marplesi"}, "Tl815815": {"^ot:originalLabel": "Oceanites oceanicus", "^ot:taxonLink": {"@tb:identifier.taxon": 19317, "@tb:identifier.taxonVariant": 44949, "@ubio": "3851990", "@uniprot": "79653"}}, "Tl815816": {"^ot:originalLabel": "Platydyptes novaezealandiae"}, "Tl815817": {"^ot:originalLabel": "Procellaria cinerea", "^ot:taxonLink": {"@tb:identifier.taxon": 23744, "@tb:identifier.taxonVariant": 55504, "@ubio": "3851950", "@uniprot": "46542"}}, "Tl815818": {"^ot:originalLabel": "Daption capense", "^ot:taxonLink": {"@tb:identifier.taxon": 8408, "@tb:identifier.taxonVariant": 20232, "@ubio": "3851906", "@uniprot": "37055"}}, "Tl815819": {"^ot:originalLabel": "Spheniscus muizoni"}, "Tl815820": {"^ot:originalLabel": "Gavia stellata", "^ot:taxonLink": {"@tb:identifier.taxon": 11779, "@tb:identifier.taxonVariant": 28063, "@ubio": "3851896", "@uniprot": "37040"}}, "Tl815821": {"^ot:originalLabel": "Madrynornis mirandus"}, "Tl815822": {"^ot:originalLabel": "Pygoscelis papua", "^ot:ottId": 1028837, "^ot:ottTaxonName": "Pygoscelis papua", "^ot:taxonLink": {"@tb:identifier.taxon": 24580, "@tb:identifier.taxonVariant": 57568, "@ubio": "3851881", "@uniprot": "30457"}}, "Tl815823": {"^ot:originalLabel": "Waimanu manneringi"}, "Tl815824": {"^ot:originalLabel": "Spheniscus humboldti", "^ot:ottId": 810741, "^ot:ottTaxonName": "Spheniscus humboldti", "^ot:taxonLink": {"@tb:identifier.taxon": 42181, "@tb:identifier.taxonVariant": 98381, "@ubio": "3851893", "@uniprot": "9240"}}, "Tl815825": {"^ot:originalLabel": "Spheniscus megaramphus"}, "Tl815826": {"^ot:originalLabel": "Gavia immer", "^ot:taxonLink": {"@tb:identifier.taxon": 11778, "@tb:identifier.taxonVariant": 28060, "@ubio": "3851899", "@uniprot": "37039"}}, "Tl815827": {"^ot:originalLabel": "Oceanodroma leucorhoa", "^ot:taxonLink": {"@tb:identifier.taxon": 19322, "@tb:identifier.taxonVariant": 44964, "@ubio": "3852001", "@uniprot": "52124"}}, "Tl815828": {"^ot:originalLabel": "Delphinornis gracilis", "^ot:taxonLink": {"@tb:identifier.taxon": 611851, "@tb:identifier.taxonVariant": 818015, "@ubio": "5627171"}}, "Tl815829": {"^ot:originalLabel": "Aptenodytes patagonicus", "^ot:ottId": 494361, "^ot:ottTaxonName": "Aptenodytes patagonicus", "^ot:taxonLink": {"@tb:identifier.taxon": 2095, "@tb:identifier.taxonVariant": 4992, "@ubio": "3851879", "@uniprot": "9234"}}, "Tl815830": {"^ot:originalLabel": "Anthropornis grandis", "^ot:taxonLink": {"@tb:identifier.taxon": 611842, "@tb:identifier.taxonVariant": 818006, "@ubio": "5627163"}}, "Tl815831": {"^ot:originalLabel": "Eudyptes chrysolophus", "^ot:ottId": 82219, "^ot:ottTaxonName": "Eudyptes chrysolophus", "^ot:taxonLink": {"@tb:identifier.taxon": 10786, "@tb:identifier.taxonVariant": 25830, "@ubio": "3851888", "@uniprot": "79627"}}, "Tl815832": {"^ot:originalLabel": "Marambiornis exilis", "^ot:taxonLink": {"@tb:identifier.taxon": 611845, "@tb:identifier.taxonVariant": 818009, "@ubio": "5627175"}}, "Tl815833": {"^ot:originalLabel": "Pygoscelis grandis"}, "Tl815834": {"^ot:originalLabel": "Palaeeudyptes gunnari", "^ot:taxonLink": {"@tb:identifier.taxon": 611840, "@tb:identifier.taxonVariant": 818004, "@ubio": "5627178"}}, "Tl815835": {"^ot:originalLabel": "Eudyptes sclateri", "^ot:ottId": 60413, "^ot:ottTaxonName": "Eudyptes sclateri", "^ot:taxonLink": {"@tb:identifier.taxon": 101662, "@tb:identifier.taxonVariant": 180946, "@ubio": "3851887", "@uniprot": "92688"}}, "Tl815836": {"^ot:originalLabel": "Palaeospheniscus bergi", "^ot:taxonLink": {"@tb:identifier.taxon": 611850, "@tb:identifier.taxonVariant": 818014, "@ubio": "6990479"}}, "Tl815837": {"^ot:originalLabel": "Paraptenodytes antarcticus", "^ot:taxonLink": {"@tb:identifier.taxon": 611844, "@tb:identifier.taxonVariant": 818008, "@ubio": "5508060"}}, "Tl815838": {"^ot:originalLabel": "Spheniscus magellanicus", "^ot:ottId": 429622, "^ot:ottTaxonName": "Spheniscus magellanicus", "^ot:taxonLink": {"@tb:identifier.taxon": 62358, "@tb:identifier.taxonVariant": 136470, "@ubio": "3851894", "@uniprot": "37081"}}, "Tl815839": {"^ot:originalLabel": "Spheniscus demersus", "^ot:ottId": 60417, "^ot:ottTaxonName": "Spheniscus demersus", "^ot:taxonLink": {"@tb:identifier.taxon": 27559, "@tb:identifier.taxonVariant": 64350, "@ubio": "3851892", "@uniprot": "92683"}}, "Tl815840": {"^ot:originalLabel": "Delphinornis wimani"}, "Tl815841": {"^ot:originalLabel": "Megadyptes antipodes", "^ot:ottId": 429618, "^ot:ottTaxonName": "Megadyptes antipodes", "^ot:taxonLink": {"@tb:identifier.taxon": 17144, "@tb:identifier.taxonVariant": 40166, "@ubio": "3851890", "@uniprot": "37085"}}, "Tl815842": {"^ot:originalLabel": "Archaeospheniscus  lowei"}, "Tl815843": {"^ot:originalLabel": "Kairuku waitaki"}, "Tl815844": {"^ot:originalLabel": "Delphinornis arctowskii", "^ot:taxonLink": {"@tb:identifier.taxon": 611847, "@tb:identifier.taxonVariant": 818011, "@ubio": "5627170"}}, "Tl815845": {"^ot:originalLabel": "Eudyptes chrysocome", "^ot:ottId": 82220, "^ot:ottTaxonName": "Eudyptes chrysocome", "^ot:taxonLink": {"@tb:identifier.taxon": 10785, "@tb:identifier.taxonVariant": 25826, "@ubio": "3851884", "@uniprot": "79626"}}, "Tl815846": {"^ot:originalLabel": "Palaeeudyptes antarcticus"}, "Tl815847": {"^ot:originalLabel": "Spheniscus mendiculus", "^ot:ottId": 399791, "^ot:ottTaxonName": "Spheniscus mendiculus", "^ot:taxonLink": {"@tb:identifier.taxon": 150516, "@tb:identifier.taxonVariant": 226129, "@ubio": "3851895", "@uniprot": "156760"}}, "Tl815848": {"^ot:originalLabel": "Eudyptula minor", "^ot:ottId": 613299, "^ot:ottTaxonName": "Eudyptula minor", "^ot:taxonLink": {"@tb:identifier.taxon": 10788, "@tb:identifier.taxonVariant": 25837, "@ubio": "3851891", "@uniprot": "37083"}}, "Tl815849": {"^ot:originalLabel": "Marplesornis novaezealandiae"}, "Tl815850": {"^ot:originalLabel": "Duntroonornis parvus"}, "Tl815851": {"^ot:originalLabel": "Thalassarche melanophrys", "^ot:taxonLink": {"@tb:identifier.taxon": 28835, "@tb:identifier.taxonVariant": 781641, "@ubio": "1761603", "@uniprot": "54026"}}, "Tl815852": {"^ot:originalLabel": "Anthropornis sp. UCMP 321023"}, "Tl815853": {"^ot:originalLabel": "Mesetaornis polaris", "^ot:taxonLink": {"@tb:identifier.taxon": 611841, "@tb:identifier.taxonVariant": 818005, "@ubio": "5627161"}}, "Tl815854": {"^ot:originalLabel": "Anthropornis nordenskjoeldi", "^ot:taxonLink": {"@tb:identifier.taxon": 611843, "@tb:identifier.taxonVariant": 818007, "@ubio": "5627165"}}, "Tl815855": {"^ot:originalLabel": "Pachydyptes ponderosus"}, "Tl815856": {"^ot:originalLabel": "Pygoscelis antarctica", "^ot:ottId": 134466, "^ot:ottTaxonName": "Pygoscelis antarcticus", "^ot:taxonLink": {"@tb:identifier.taxon": 24579, "@tb:identifier.taxonVariant": 57564, "@ubio": "3851883", "@uniprot": "79643"}, "^skos:prefLabel": "Pygoscelis antarcticus"}, "Tl815857": {"^ot:originalLabel": "Delphinornis larseni", "^ot:taxonLink": {"@tb:identifier.taxon": 611852, "@tb:identifier.taxonVariant": 818016, "@ubio": "5627172"}}, "Tl815858": {"^ot:originalLabel": "Aptenodytes forsteri", "^ot:ottId": 494370, "^ot:ottTaxonName": "Aptenodytes forsteri", "^ot:taxonLink": {"@tb:identifier.taxon": 53725, "@tb:identifier.taxonVariant": 124337, "@ubio": "3851880", "@uniprot": "9233"}}, "Tl815859": {"^ot:originalLabel": "Diomedea exulans", "^ot:taxonLink": {"@tb:identifier.taxon": 9135, "@tb:identifier.taxonVariant": 21958, "@ubio": "3851983", "@uniprot": "46550"}}, "Tl815860": {"^ot:originalLabel": "Kairuku grebneffi"}, "Tl815861": {"^ot:originalLabel": "Eretiscus tonnii", "^ot:taxonLink": {"@tb:identifier.taxon": 611846, "@tb:identifier.taxonVariant": 818010, "@ubio": "5450951"}}, "Tl815862": {"^ot:originalLabel": "Waimanu tuatahi"}, "Tl815863": {"^ot:originalLabel": "Burnside \"Palaeudyptes\""}, "Tl815864": {"^ot:originalLabel": "Eudyptes schlegeli", "^ot:ottId": 605139, "^ot:ottTaxonName": "Eudyptes schlegeli", "^ot:taxonLink": {"@tb:identifier.taxon": 75978, "@tb:identifier.taxonVariant": 153213, "@ubio": "3851889", "@uniprot": "57240"}}, "Tl815865": {"^ot:originalLabel": "Phoebetria palpebrata", "^ot:taxonLink": {"@tb:identifier.taxon": 21876, "@tb:identifier.taxonVariant": 50880, "@ubio": "3851981", "@uniprot": "46545"}}, "Tl815866": {"^ot:originalLabel": "Pelecanoides urinatrix", "^ot:taxonLink": {"@tb:identifier.taxon": 20803, "@tb:identifier.taxonVariant": 48441, "@ubio": "3851975", "@uniprot": "37079"}}, "Tl815867": {"^ot:originalLabel": "Spheniscus urbinai", "^ot:taxonLink": {"@tb:identifier.taxon": 611848, "@tb:identifier.taxonVariant": 818012, "@ubio": "5626701"}}, "Tl815868": {"^ot:originalLabel": "Puffinus gravis", "^ot:taxonLink": {"@tb:identifier.taxon": 24519, "@tb:identifier.taxonVariant": 57424, "@ubio": "3851957", "@uniprot": "37051"}}, "Tl815869": {"^ot:originalLabel": "Palaeeudyptes klekowskii", "^ot:taxonLink": {"@tb:identifier.taxon": 611849, "@tb:identifier.taxonVariant": 818013, "@ubio": "6545858"}}, "Tl815870": {"^ot:originalLabel": "Archaeospheniscus lopdelli"}, "Tl815871": {"^ot:originalLabel": "Inkayacu paracasensis"}, "Tl815872": {"^ot:originalLabel": "Pachyptila desolata", "^ot:taxonLink": {"@tb:identifier.taxon": 20187, "@tb:identifier.taxonVariant": 47030, "@ubio": "3851941", "@uniprot": "79635"}}, "Tl815873": {"^ot:originalLabel": "Perudyptes devriesi"}, "Tl815874": {"^ot:originalLabel": "Eudyptes moseleyi", "^ot:ottId": 3600098, "^ot:ottTaxonName": "Eudyptes chrysocome moseleyi"}, "Tl815875": {"^ot:originalLabel": "Pygoscelis adeliae", "^ot:ottId": 494357, "^ot:ottTaxonName": "Pygoscelis adeliae", "^ot:taxonLink": {"@tb:identifier.taxon": 24578, "@tb:identifier.taxonVariant": 57561, "@ubio": "3851882", "@uniprot": "9238"}}}}}, "treesById": {"Tb17682": {"@label": "Kairuku JVP", "@otus": "Tls26331", "^ot:treeElementOrder": ["Tr53559"], "^skos:historyNote": "Mapped from TreeBASE schema using org.cipres.treebase.domain.nexus.nexml.NexmlTreeBlockWriter@6b28a826 $Rev: 1040 $", "treeById": {"Tr53559": {"@label": "Fig. 8", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:undefined", "^ot:curatedType": "Maximum parsimony ", "^ot:inGroupClade": "Tn8948857", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:rootNodeId": "Tn8948857", "^ot:specifiedRoot": "Tn8948857", "^ot:tag": [], "^ot:unrootedTree": false, "^tb:kind.tree": "Species Tree", "^tb:ntax.tree": 22, "^tb:quality.tree": "Unrated", "^tb:type.tree": "Consensus", "edgeBySourceId": {"Tn8948837": {"edge1499737": {"@source": "Tn8948837", "@target": "Tn8948872"}, "edge1499743": {"@source": "Tn8948837", "@target": "Tn8948841"}}, "Tn8948839": {"edge1499681": {"@source": "Tn8948839", "@target": "Tn8948843"}, "edge1499699": {"@source": "Tn8948839", "@target": "Tn8948873"}}, "Tn8948843": {"edge1499684": {"@source": "Tn8948843", "@target": "Tn8948865"}, "edge1499686": {"@source": "Tn8948843", "@target": "Tn8948867"}}, "Tn8948845": {"edge1499733": {"@source": "Tn8948845", "@target": "Tn8948861"}, "edge1499747": {"@source": "Tn8948845", "@target": "Tn8948852"}}, "Tn8948847": {"edge1499757": {"@source": "Tn8948847", "@target": "Tn8948848"}, "edge1499759": {"@source": "Tn8948847", "@target": "Tn8948854"}}, "Tn8948852": {"edge1499749": {"@source": "Tn8948852", "@target": "Tn8948859"}, "edge1499755": {"@source": "Tn8948852", "@target": "Tn8948847"}}, "Tn8948853": {"edge1499695": {"@source": "Tn8948853", "@target": "Tn8948838"}, "edge1499697": {"@source": "Tn8948853", "@target": "Tn8948851"}}, "Tn8948854": {"edge1499763": {"@source": "Tn8948854", "@target": "Tn8948874"}, "edge1499765": {"@source": "Tn8948854", "@target": "Tn8948833"}}, "Tn8948856": {"edge1499703": {"@source": "Tn8948856", "@target": "Tn8948844"}, "edge1499705": {"@source": "Tn8948856", "@target": "Tn8948864"}}, "Tn8948857": {"edge1499671": {"@source": "Tn8948857", "@target": "Tn8948858"}, "edge1499678": {"@source": "Tn8948857", "@target": "Tn8948839"}}, "Tn8948858": {"edge1499674": {"@source": "Tn8948858", "@target": "Tn8948850"}, "edge1499676": {"@source": "Tn8948858", "@target": "Tn8948842"}}, "Tn8948859": {"edge1499751": {"@source": "Tn8948859", "@target": "Tn8948840"}, "edge1499753": {"@source": "Tn8948859", "@target": "Tn8948846"}}, "Tn8948860": {"edge1499716": {"@source": "Tn8948860", "@target": "Tn8948834"}, "edge1499718": {"@source": "Tn8948860", "@target": "Tn8948862"}}, "Tn8948861": {"edge1499735": {"@source": "Tn8948861", "@target": "Tn8948837"}, "edge1499745": {"@source": "Tn8948861", "@target": "Tn8948855"}}, "Tn8948863": {"edge1499729": {"@source": "Tn8948863", "@target": "Tn8948866"}, "edge1499731": {"@source": "Tn8948863", "@target": "Tn8948845"}}, "Tn8948864": {"edge1499707": {"@source": "Tn8948864", "@target": "Tn8948835"}, "edge1499709": {"@source": "Tn8948864", "@target": "Tn8948868"}}, "Tn8948867": {"edge1499690": {"@source": "Tn8948867", "@target": "Tn8948836"}, "edge1499692": {"@source": "Tn8948867", "@target": "Tn8948853"}}, "Tn8948868": {"edge1499713": {"@source": "Tn8948868", "@target": "Tn8948860"}, "edge1499720": {"@source": "Tn8948868", "@target": "Tn8948869"}}, "Tn8948869": {"edge1499723": {"@source": "Tn8948869", "@target": "Tn8948871"}, "edge1499725": {"@source": "Tn8948869", "@target": "Tn8948870"}}, "Tn8948872": {"edge1499739": {"@source": "Tn8948872", "@target": "Tn8948849"}, "edge1499741": {"@source": "Tn8948872", "@target": "Tn8948875"}}, "Tn8948873": {"edge1499701": {"@source": "Tn8948873", "@target": "Tn8948856"}, "edge1499727": {"@source": "Tn8948873", "@target": "Tn8948863"}}}, "nodeById": {"Tn8948833": {"@otu": "Tl815812"}, "Tn8948834": {"@otu": "Tl815838"}, "Tn8948835": {"@otu": "Tl815848"}, "Tn8948836": {"@otu": "Tl815875"}, "Tn8948837": {}, "Tn8948838": {"@otu": "Tl815822"}, "Tn8948839": {}, "Tn8948840": {"@otu": "Tl815864"}, "Tn8948841": {"@otu": "Tl815874"}, "Tn8948842": {"@otu": "Tl815858"}, "Tn8948843": {}, "Tn8948844": {"@otu": "Tl815836"}, "Tn8948845": {}, "Tn8948846": {"@otu": "Tl815831"}, "Tn8948847": {}, "Tn8948848": {"@otu": "Tl815835"}, "Tn8948849": {"@otu": "Tl815810"}, "Tn8948850": {"@otu": "Tl815829"}, "Tn8948851": {"@otu": "Tl815856"}, "Tn8948852": {}, "Tn8948853": {}, "Tn8948854": {}, "Tn8948855": {"@otu": "Tl815813"}, "Tn8948856": {}, "Tn8948857": {"@root": true}, "Tn8948858": {}, "Tn8948859": {}, "Tn8948860": {}, "Tn8948861": {}, "Tn8948862": {"@otu": "Tl815839"}, "Tn8948863": {}, "Tn8948864": {}, "Tn8948865": {"@otu": "Tl815807"}, "Tn8948866": {"@otu": "Tl815841"}, "Tn8948867": {}, "Tn8948868": {}, "Tn8948869": {}, "Tn8948870": {"@otu": "Tl815824"}, "Tn8948871": {"@otu": "Tl815847"}, "Tn8948872": {}, "Tn8948873": {}, "Tn8948874": {"@otu": "Tl815806"}, "Tn8948875": {"@otu": "Tl815845"}}}}}}}}, "branch2sha": {"master": "2aa180baef3c5e313da1e7f09c83ce2c0467b457"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "02c52c24d1c18ebe15d3f9f387a703a1b447ecf1", "author_name": "Jonathan A Rees", "author_email": "jar398@mumble.net", "date": "Sat, 1 Oct 2016 19:42:45 -0400", "date_ISO_8601": "2016-10-01 19:42:45 -0400", "relative_date": "10 years ago", "message_subject": "change 10.xxx to http://dx.doi.org/10.xxx"}, {"id": "0ff54defa4a50010607f63e9d1f573eff2e78fdd", "author_name": "ningwang83", "author_email": "ANONYMOUS", "date": "Fri, 2 Sep 2016 20:36:09 +0000", "date_ISO_8601": "2016-09-02 20:36:09 +0000", "relative_date": "10 years ago", "message_subject": "prefer tree", "message_body": "(Update document 'ot_786' via OpenTree API)"}, {"id": "aea9207eb75abc49b9e8fb2704a1f80d21734d43", "author_name": "ningwang83", "author_email": "ANONYMOUS", "date": "Fri, 2 Sep 2016 20:34:15 +0000", "date_ISO_8601": "2016-09-02 20:34:15 +0000", "relative_date": "10 years ago", "message_subject": "map taxa", "message_body": "(Update document 'ot_786' via OpenTree API)"}, {"id": "5a522ab48b955ad7a608e19318d43de0de247f6e", "author_name": "ningwang83", "author_email": "ANONYMOUS", "date": "Fri, 2 Sep 2016 20:25:56 +0000", "date_ISO_8601": "2016-09-02 20:25:56 +0000", "relative_date": "10 years ago", "message_subject": "init", "message_body": "(Update document 'ot_786' via OpenTree API)"}, {"id": "74565d6cd6ce47aec72321c7b1ddd25e11c01070", "author_name": "ningwang83", "author_email": "ANONYMOUS", "date": "Fri, 2 Sep 2016 20:22:41 +0000", "date_ISO_8601": "2016-09-02 20:22:41 +0000", "relative_date": "10 years ago", "message_subject": "Update document 'ot_786' via OpenTree API"}]}