{"sha": "6bed60428352c04d00341ad513a8efb9442e4d8a", "data": {"nexml": {"@about": "#study", "@generator": "Open Tree API", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xhtml": "http://www.w3.org/1999/xhtml/vocab#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "Open Tree NexSON validation", "@id": "peyotl-validator", "@name": "api.opentreeoflife.org/validate", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": [], "otherProperty": [{"name": "pythonVersion", "value": "2.7.9"}, {"name": "pythonImplementation", "value": "CPython"}]}}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0"}]}, "^ot:annotationEvents": {"annotation": [{"@dateCreated": "2016-10-17T17:05:24.096Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"searchContext": {"$": "Animals"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}]}, "useFuzzyMatching": false}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2016-10-17T17:05:24.096Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": [{"@filename": "cnidaria2014 : data : supermatrix3_ML_Tree_BS_support.tre", "@size": 20294, "@type": "nexus", "@url": "/curator/download/supporting_files.doc.b5b50927de8a6359.636e69646172696132303134203a2064617461203a2073757065726d6174726978335f4d4c5f547265655f42535f737570706f72742e747265.tre", "description": {"$": "Source data for tree(s) 'tree1'"}, "sourceForTree": [{"$": "tree1"}]}, {"@filename": "ZapataFullMatrix.txt", "@size": 22040, "@type": "nexus", "@url": "/curator/download/supporting_files.doc.a890e882f3126887.5a617061746146756c6c4d61747269782e747874.txt", "description": {"$": "Source data for tree(s) 'tree2'"}, "sourceForTree": [{"$": "tree2"}]}]}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node100", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node100"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node101", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node101"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node103", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node103"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node105", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node105"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node107", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node107"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node110", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node110"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node112", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node112"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node113", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node113"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node118", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node118"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node119", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node119"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node120", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node120"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node124", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node124"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node126", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node126"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node128", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node128"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node131", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node131"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node133", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node133"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node134", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node134"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node138", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node138"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node140", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node140"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node71", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node71"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node72", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node72"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node73", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node73"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node74", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node74"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node75", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node75"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node76", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node76"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node79", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node79"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node84", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node84"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node85", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node85"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node86", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node86"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node89", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node89"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node90", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node90"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node91", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node91"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node92", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node92"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node93", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node93"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node96", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node96"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node99", "@treesID": "trees1", "@treeID": "tree2", "@nodeID": "node99"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit", "^ot:reasonsToExcludeFromSynthesis"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["rootedge"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit", "^ot:reasonsToExcludeFromSynthesis"], "refersTo": {"@top": "trees", "@idref": "tree2", "@treesID": "trees1", "@treeID": "tree2"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["rootedge"], "refersTo": {"@top": "trees", "@idref": "tree2", "@treesID": "trees1", "@treeID": "tree2"}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": ["tree2"], "^ot:comment": "", "^ot:curatorName": ["pcart", "Benjamin Redelings"], "^ot:dataDeposit": {"@href": "https://bitbucket.org/caseywdunn/cnidaria2014/src/e2820a2c0d9c6628e6bdfac2e0053525bddd11f4/data/?at=master"}, "^ot:focalClade": 641033, "^ot:focalCladeOTTTaxonName": "Cnidaria", "^ot:otusElementOrder": ["otus1"], "^ot:studyId": "ot_895", "^ot:studyPublication": {"@href": "http://dx.doi.org/10.1371/journal.pone.0139068"}, "^ot:studyPublicationReference": "Felipe Zapata, Freya E. Goetz, Stephen A. Smith, Mark Howison, Stefan Siebert, Samuel H. Church, Steven M. Sanders, Cheryl Lewis Ames, Catherine S. McFadden, Scott C. France, Marymegan Daly, Allen G. Collins, Steven H. D. Haddock, Casey W. Dunn, Paulyn Cartwright, 2015, 'Phylogenomic Analyses Support Traditional Relationships within Cnidaria', PLOS ONE, vol. 10, no. 10, p. e0139068", "^ot:studyYear": 2015, "^ot:tag": [], "^ot:treesElementOrder": ["trees1"], "^xhtml:license": {"@href": "http://creativecommons.org/publicdomain/zero/1.0/"}, "otusById": {"otus1": {"otuById": {"otu1": {"^ot:originalLabel": "Physalia physalis", "^ot:ottId": 702294, "^ot:ottTaxonName": "Physalia physalis"}, "otu10": {"^ot:originalLabel": "Atolla vanhoeffeni", "^ot:ottId": 849123, "^ot:ottTaxonName": "Atolla vanhoeffeni"}, "otu11": {"^ot:originalLabel": "Drosophila melanogaster", "^ot:ottId": 505714, "^ot:ottTaxonName": "Drosophila melanogaster"}, "otu12": {"^ot:originalLabel": "Capitella teleta", "^ot:ottId": 707082, "^ot:ottTaxonName": "Capitella teleta"}, "otu13": {"^ot:originalLabel": "Strongylocentrotus purpuratus", "^ot:ottId": 564702, "^ot:ottTaxonName": "Strongylocentrotus purpuratus"}, "otu14": {"^ot:originalLabel": "Taeniopygia guttata", "^ot:ottId": 708327, "^ot:ottTaxonName": "Taeniopygia guttata"}, "otu15": {"^ot:originalLabel": "Trichoplax adhaerens", "^ot:ottId": 570365, "^ot:ottTaxonName": "Trichoplax adhaerens"}, "otu16": {"^ot:originalLabel": "Mnemiopsis leidyi", "^ot:ottId": 161877, "^ot:ottTaxonName": "Mnemiopsis leidyi"}, "otu17": {"^ot:originalLabel": "Amphimedon queenslandica", "^ot:ottId": 707499, "^ot:ottTaxonName": "Amphimedon queenslandica"}, "otu18": {"^ot:originalLabel": "Keratoisidinae", "^ot:ottId": 157409, "^ot:ottTaxonName": "Isididae"}, "otu19": {"^ot:originalLabel": "Anthomastus", "^ot:ottId": 30978, "^ot:ottTaxonName": "Anthomastus"}, "otu2": {"^ot:originalLabel": "Agalma elegans", "^ot:ottId": 536352, "^ot:ottTaxonName": "Agalma elegans"}, "otu20": {"^ot:originalLabel": "Scleronephthya", "^ot:ottId": 338806, "^ot:ottTaxonName": "Scleronephthya"}, "otu21": {"^ot:originalLabel": "Nephthyigorgia", "^ot:ottId": 269370, "^ot:ottTaxonName": "Nephthyigorgia"}, "otu22": {"^ot:originalLabel": "Acropora digitifera", "^ot:ottId": 366634, "^ot:ottTaxonName": "Acropora digitifera"}, "otu23": {"^ot:originalLabel": "Acropora millepora", "^ot:ottId": 3675115, "^ot:ottTaxonName": "Acropora millepora (species in domain Eukaryota)"}, "otu24": {"^ot:originalLabel": "Montastraea faveolata", "^ot:ottId": 955287, "^ot:ottTaxonName": "Montastraea faveolata"}, "otu25": {"^ot:originalLabel": "Porites astreoides", "^ot:ottId": 208979, "^ot:ottTaxonName": "Porites astreoides"}, "otu26": {"^ot:originalLabel": "Antipathes griggi", "^ot:ottId": 299798, "^ot:ottTaxonName": "Antipathes griggi"}, "otu27": {"^ot:originalLabel": "Anemonia viridis", "^ot:ottId": 214124, "^ot:ottTaxonName": "Anemonia viridis"}, "otu28": {"^ot:originalLabel": "Metridium senile", "^ot:ottId": 558017, "^ot:ottTaxonName": "Metridium senile"}, "otu29": {"^ot:originalLabel": "Aiptasia pallida", "^ot:ottId": 135923, "^ot:ottTaxonName": "Exaiptasia pallida"}, "otu3": {"^ot:originalLabel": "Nanomia bijuga", "^ot:ottId": 358889, "^ot:ottTaxonName": "Nanomia bijuga"}, "otu30": {"^ot:originalLabel": "Nematostella vectensis", "^ot:ottId": 938118, "^ot:ottTaxonName": "Nematostella vectensis"}, "otu31": {"^ot:originalLabel": "Clytia hemisphaerica", "^ot:ottId": 33386, "^ot:ottTaxonName": "Clytia hemisphaerica"}, "otu32": {"^ot:originalLabel": "Hydra magnipapillata", "^ot:ottId": 861536, "^ot:ottTaxonName": "Hydra vulgaris"}, "otu33": {"^ot:originalLabel": "Candelabrum sp.", "^ot:ottId": 4719425, "^ot:ottTaxonName": "Candelabrum (genus in Holozoa)"}, "otu34": {"^ot:originalLabel": "Ectopleura larynx", "^ot:ottId": 183506, "^ot:ottTaxonName": "Ectopleura larynx"}, "otu35": {"^ot:originalLabel": "Hydractinia symbiolongicarpus", "^ot:ottId": 35793, "^ot:ottTaxonName": "Hydractinia symbiolongicarpus"}, "otu36": {"^ot:originalLabel": "Podocoryna carnea", "^ot:ottId": 612106, "^ot:ottTaxonName": "Podocoryna carnea"}, "otu4": {"^ot:originalLabel": "Craseoa lathetica", "^ot:ottId": 3680671, "^ot:ottTaxonName": "Craseoa lathetica"}, "otu5": {"^ot:originalLabel": "Abylopsis tetragona", "^ot:ottId": 913319, "^ot:ottTaxonName": "Abylopsis tetragona"}, "otu57": {"^ot:originalLabel": "Cerianthid", "^ot:ottId": 622560, "^ot:ottTaxonName": "Ceriantharia"}, "otu6": {"^ot:originalLabel": "Aegina citrea", "^ot:ottId": 258886, "^ot:ottTaxonName": "Aegina citrea"}, "otu68": {"^ot:originalLabel": "Haliclystus", "^ot:ottId": 570656, "^ot:ottTaxonName": "Haliclystus"}, "otu7": {"^ot:originalLabel": "Halitrephes valdiviae", "^ot:ottId": 3681161, "^ot:ottTaxonName": "Halitrephes valdiviae"}, "otu8": {"^ot:originalLabel": "Alatina alata", "^ot:ottId": 539530, "^ot:ottTaxonName": "Alatina alata"}, "otu9": {"^ot:originalLabel": "Aurelia aurita", "^ot:ottId": 404481, "^ot:ottTaxonName": "Aurelia aurita"}}}}, "treesById": {"trees1": {"@otus": "otus1", "^ot:treeElementOrder": ["tree1", "tree2"], "treeById": {"tree1": {"@label": "1", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:bootstrapValues", "^ot:branchLengthTimeUnit": "", "^ot:curatedType": "Maximum likelihood ", "^ot:inGroupClade": "node19", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:reasonsToExcludeFromSynthesis": [{"$": "Already have a tree from this study."}], "^ot:rootNodeId": "tree1_ROOT", "^ot:specifiedRoot": "tree1_ROOT", "^ot:tag": [], "^ot:unrootedTree": false, "edgeBySourceId": {"node1": {"edge68": {"@length": 0.071654, "@source": "node1", "@target": "node69"}, "edge69": {"@length": 0.132673, "@source": "node1", "@target": "node70"}}, "node10": {"edge10": {"@length": 0.209834, "@source": "node10", "@target": "node11"}, "edge11": {"@length": 0.164328, "@source": "node10", "@target": "node12"}}, "node13": {"edge12": {"@length": 0.083686, "@source": "node13", "@target": "node9"}, "edge13": {"@length": 0.053987, "@source": "node13", "@target": "node14"}}, "node14": {"edge14": {"@length": 0.237749, "@source": "node14", "@target": "node15"}, "edge15": {"@length": 0.038664, "@source": "node14", "@target": "node16"}}, "node16": {"edge16": {"@length": 0.173122, "@source": "node16", "@target": "node17"}, "edge17": {"@length": 0.215516, "@source": "node16", "@target": "node18"}}, "node19": {"edge18": {"@length": 0.102473, "@source": "node19", "@target": "node13"}, "edge32": {"@length": 0.053141, "@source": "node19", "@target": "node33"}}, "node2": {"edge1": {"@length": 0.115432, "@source": "node2", "@target": "node1"}, "edge57": {"@length": 0.0189, "@source": "node2", "@target": "node58"}}, "node20": {"edge20": {"@length": 0.048057, "@source": "node20", "@target": "node21"}, "edge25": {"@length": 0.061074, "@source": "node20", "@target": "node26"}}, "node21": {"edge21": {"@length": 0.459972, "@source": "node21", "@target": "node22"}, "edge22": {"@length": 0.060823, "@source": "node21", "@target": "node23"}}, "node23": {"edge23": {"@length": 0.678399, "@source": "node23", "@target": "node24"}, "edge24": {"@length": 0.512345, "@source": "node23", "@target": "node25"}}, "node26": {"edge26": {"@length": 0.33892, "@source": "node26", "@target": "node27"}, "edge27": {"@length": 0.027294, "@source": "node26", "@target": "node28"}}, "node28": {"edge28": {"@length": 0.334798, "@source": "node28", "@target": "node29"}, "edge29": {"@length": 0.054203, "@source": "node28", "@target": "node30"}}, "node3": {"edge2": {"@length": 0.027544, "@source": "node3", "@target": "node2"}, "edge3": {"@length": 0.100348, "@source": "node3", "@target": "node4"}}, "node30": {"edge30": {"@length": 0.567392, "@source": "node30", "@target": "node31"}, "edge31": {"@length": 0.310289, "@source": "node30", "@target": "node32"}}, "node33": {"edge33": {"@length": 0.210235, "@source": "node33", "@target": "node34"}, "edge40": {"@length": 0.068019, "@source": "node33", "@target": "node41"}}, "node34": {"edge34": {"@length": 0.020373, "@source": "node34", "@target": "node35"}, "edge37": {"@length": 0.052171, "@source": "node34", "@target": "node38"}}, "node35": {"edge35": {"@length": 0.086251, "@source": "node35", "@target": "node36"}, "edge36": {"@length": 0.108961, "@source": "node35", "@target": "node37"}}, "node38": {"edge38": {"@length": 0.070762, "@source": "node38", "@target": "node39"}, "edge39": {"@length": 0.043663, "@source": "node38", "@target": "node40"}}, "node4": {"edge4": {"@length": 0.210471, "@source": "node4", "@target": "node5"}, "edge5": {"@length": 0.034438, "@source": "node4", "@target": "node6"}}, "node41": {"edge41": {"@length": 0.027831, "@source": "node41", "@target": "node42"}, "edge50": {"@length": 0.064124, "@source": "node41", "@target": "node51"}}, "node42": {"edge42": {"@length": 0.164871, "@source": "node42", "@target": "node43"}, "edge43": {"@length": 0.070276, "@source": "node42", "@target": "node44"}}, "node44": {"edge44": {"@length": 0.101895, "@source": "node44", "@target": "node45"}, "edge45": {"@length": 0.010231, "@source": "node44", "@target": "node46"}}, "node46": {"edge46": {"@length": 0.08162, "@source": "node46", "@target": "node47"}, "edge49": {"@length": 0.084038, "@source": "node46", "@target": "node50"}}, "node47": {"edge47": {"@length": 0.029515, "@source": "node47", "@target": "node48"}, "edge48": {"@length": 0.005881, "@source": "node47", "@target": "node49"}}, "node51": {"edge51": {"@length": 0.144039, "@source": "node51", "@target": "node52"}, "edge52": {"@length": 0.049977, "@source": "node51", "@target": "node53"}}, "node53": {"edge53": {"@length": 0.049778, "@source": "node53", "@target": "node54"}, "edge56": {"@length": 0.104329, "@source": "node53", "@target": "node57"}}, "node54": {"edge54": {"@length": 0.067057, "@source": "node54", "@target": "node55"}, "edge55": {"@length": 0.049617, "@source": "node54", "@target": "node56"}}, "node58": {"edge58": {"@length": 0.083278, "@source": "node58", "@target": "node59"}, "edge67": {"@length": 0.260701, "@source": "node58", "@target": "node68"}}, "node59": {"edge59": {"@length": 0.132712, "@source": "node59", "@target": "node60"}, "edge60": {"@length": 0.042522, "@source": "node59", "@target": "node61"}}, "node6": {"edge6": {"@length": 0.181182, "@source": "node6", "@target": "node7"}, "edge7": {"@length": 0.160876, "@source": "node6", "@target": "node8"}}, "node61": {"edge61": {"@length": 0.05086, "@source": "node61", "@target": "node62"}, "edge64": {"@length": 0.053656, "@source": "node61", "@target": "node65"}}, "node62": {"edge62": {"@length": 0.142523, "@source": "node62", "@target": "node63"}, "edge63": {"@length": 0.065721, "@source": "node62", "@target": "node64"}}, "node65": {"edge65": {"@length": 0.056186, "@source": "node65", "@target": "node66"}, "edge66": {"@length": 0.094644, "@source": "node65", "@target": "node67"}}, "node9": {"edge8": {"@length": 0.04947, "@source": "node9", "@target": "node3"}, "edge9": {"@length": 0.109927, "@source": "node9", "@target": "node10"}}, "tree1_ROOT": {"edge19": {"@length": 0.05122, "@source": "tree1_ROOT", "@target": "node20"}, "tree1_ROOT_EDGE": {"@source": "tree1_ROOT", "@target": "node19"}}}, "nodeById": {"node1": {}, "node10": {}, "node11": {"@otu": "otu6"}, "node12": {"@otu": "otu7"}, "node13": {}, "node14": {}, "node15": {"@otu": "otu8"}, "node16": {}, "node17": {"@otu": "otu10"}, "node18": {"@otu": "otu9"}, "node19": {}, "node2": {}, "node20": {}, "node21": {}, "node22": {"@otu": "otu15"}, "node23": {}, "node24": {"@otu": "otu16"}, "node25": {"@otu": "otu17"}, "node26": {}, "node27": {"@otu": "otu14"}, "node28": {}, "node29": {"@otu": "otu13"}, "node3": {}, "node30": {}, "node31": {"@otu": "otu11"}, "node32": {"@otu": "otu12"}, "node33": {}, "node34": {}, "node35": {}, "node36": {"@otu": "otu18"}, "node37": {"@otu": "otu19"}, "node38": {}, "node39": {"@otu": "otu20"}, "node4": {}, "node40": {"@otu": "otu21"}, "node41": {}, "node42": {}, "node43": {"@otu": "otu26"}, "node44": {}, "node45": {"@otu": "otu24"}, "node46": {}, "node47": {}, "node48": {"@otu": "otu22"}, "node49": {"@otu": "otu23"}, "node5": {"@otu": "otu32"}, "node50": {"@otu": "otu25"}, "node51": {}, "node52": {"@otu": "otu30"}, "node53": {}, "node54": {}, "node55": {"@otu": "otu28"}, "node56": {"@otu": "otu29"}, "node57": {"@otu": "otu27"}, "node58": {}, "node59": {}, "node6": {}, "node60": {"@otu": "otu1"}, "node61": {}, "node62": {}, "node63": {"@otu": "otu5"}, "node64": {"@otu": "otu4"}, "node65": {}, "node66": {"@otu": "otu2"}, "node67": {"@otu": "otu3"}, "node68": {"@otu": "otu31"}, "node69": {"@otu": "otu35"}, "node7": {"@otu": "otu34"}, "node70": {"@otu": "otu36"}, "node8": {"@otu": "otu33"}, "node9": {}, "tree1_ROOT": {"@root": true}}, "rootedge": [{"@id": "enode1", "@length": "0.0", "@target": "node1"}]}, "tree2": {"@label": "FullMatrix", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:undefined", "^ot:branchLengthTimeUnit": "", "^ot:curatedType": "", "^ot:inGroupClade": "node90", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:reasonsToExcludeFromSynthesis": [], "^ot:rootNodeId": "tree2_ROOT", "^ot:specifiedRoot": "tree2_ROOT", "^ot:tag": [], "^ot:unrootedTree": true, "edgeBySourceId": {"node100": {"edge108": {"@length": 0.064082, "@source": "node100", "@target": "node110"}, "edge99": {"@length": 0.027975, "@source": "node100", "@target": "node101"}}, "node101": {"edge100": {"@length": 0.165463, "@source": "node101", "@target": "node102"}, "edge101": {"@length": 0.070317, "@source": "node101", "@target": "node103"}}, "node103": {"edge102": {"@length": 0.101828, "@source": "node103", "@target": "node104"}, "edge103": {"@length": 0.010166, "@source": "node103", "@target": "node105"}}, "node105": {"edge104": {"@length": 0.084109, "@source": "node105", "@target": "node106"}, "edge105": {"@length": 0.081511, "@source": "node105", "@target": "node107"}}, "node107": {"edge106": {"@length": 0.02949, "@source": "node107", "@target": "node108"}, "edge107": {"@length": 0.005893, "@source": "node107", "@target": "node109"}}, "node110": {"edge109": {"@length": 0.143945, "@source": "node110", "@target": "node111"}, "edge110": {"@length": 0.050114, "@source": "node110", "@target": "node112"}}, "node112": {"edge111": {"@length": 0.049902, "@source": "node112", "@target": "node113"}, "edge114": {"@length": 0.104317, "@source": "node112", "@target": "node116"}}, "node113": {"edge112": {"@length": 0.049476, "@source": "node113", "@target": "node114"}, "edge113": {"@length": 0.067143, "@source": "node113", "@target": "node115"}}, "node118": {"edge117": {"@length": 0.047981, "@source": "node118", "@target": "node119"}, "edge122": {"@length": 0.061123, "@source": "node118", "@target": "node124"}}, "node119": {"edge118": {"@length": 0.060753, "@source": "node119", "@target": "node120"}, "edge121": {"@length": 0.460407, "@source": "node119", "@target": "node123"}}, "node120": {"edge119": {"@length": 0.67903, "@source": "node120", "@target": "node121"}, "edge120": {"@length": 0.512728, "@source": "node120", "@target": "node122"}}, "node124": {"edge123": {"@length": 0.339309, "@source": "node124", "@target": "node125"}, "edge124": {"@length": 0.027264, "@source": "node124", "@target": "node126"}}, "node126": {"edge125": {"@length": 0.335034, "@source": "node126", "@target": "node127"}, "edge126": {"@length": 0.054098, "@source": "node126", "@target": "node128"}}, "node128": {"edge127": {"@length": 0.567935, "@source": "node128", "@target": "node129"}, "edge128": {"@length": 0.310418, "@source": "node128", "@target": "node130"}}, "node131": {"edge130": {"@length": 0.303473, "@source": "node131", "@target": "node132"}, "edge131": {"@length": 0.020016, "@source": "node131", "@target": "node133"}}, "node133": {"edge132": {"@length": 0.038478, "@source": "node133", "@target": "node134"}, "edge135": {"@length": 0.237581, "@source": "node133", "@target": "node137"}}, "node134": {"edge133": {"@length": 0.173128, "@source": "node134", "@target": "node135"}, "edge134": {"@length": 0.215739, "@source": "node134", "@target": "node136"}}, "node138": {"edge137": {"@length": 0.210412, "@source": "node138", "@target": "node139"}, "edge138": {"@length": 0.034543, "@source": "node138", "@target": "node140"}}, "node140": {"edge139": {"@length": 0.181107, "@source": "node140", "@target": "node141"}, "edge140": {"@length": 0.160737, "@source": "node140", "@target": "node142"}}, "node71": {"edge141": {"@length": 0.071581, "@source": "node71", "@target": "node143"}, "edge142": {"@length": 0.132692, "@source": "node71", "@target": "node144"}}, "node72": {"edge70": {"@length": 0.115504, "@source": "node72", "@target": "node71"}, "edge71": {"@length": 0.018935, "@source": "node72", "@target": "node73"}}, "node73": {"edge72": {"@length": 0.083186, "@source": "node73", "@target": "node74"}, "edge81": {"@length": 0.260634, "@source": "node73", "@target": "node83"}}, "node74": {"edge73": {"@length": 0.042497, "@source": "node74", "@target": "node75"}, "edge80": {"@length": 0.132627, "@source": "node74", "@target": "node82"}}, "node75": {"edge74": {"@length": 0.050818, "@source": "node75", "@target": "node76"}, "edge77": {"@length": 0.053637, "@source": "node75", "@target": "node79"}}, "node76": {"edge75": {"@length": 0.06566, "@source": "node76", "@target": "node77"}, "edge76": {"@length": 0.142438, "@source": "node76", "@target": "node78"}}, "node79": {"edge78": {"@length": 0.056145, "@source": "node79", "@target": "node80"}, "edge79": {"@length": 0.094609, "@source": "node79", "@target": "node81"}}, "node84": {"edge136": {"@length": 0.100332, "@source": "node84", "@target": "node138"}, "edge82": {"@length": 0.027538, "@source": "node84", "@target": "node72"}}, "node85": {"edge83": {"@length": 0.04951, "@source": "node85", "@target": "node84"}, "edge84": {"@length": 0.109659, "@source": "node85", "@target": "node86"}}, "node86": {"edge85": {"@length": 0.164702, "@source": "node86", "@target": "node87"}, "edge86": {"@length": 0.209882, "@source": "node86", "@target": "node88"}}, "node89": {"edge129": {"@length": 0.0345, "@source": "node89", "@target": "node131"}, "edge87": {"@length": 0.083904, "@source": "node89", "@target": "node85"}}, "node90": {"edge88": {"@length": 0.102694, "@source": "node90", "@target": "node89"}, "edge89": {"@length": 0.05181, "@source": "node90", "@target": "node91"}}, "node91": {"edge90": {"@length": 0.211168, "@source": "node91", "@target": "node92"}, "edge97": {"@length": 0.018244, "@source": "node91", "@target": "node99"}}, "node92": {"edge91": {"@length": 0.020544, "@source": "node92", "@target": "node93"}, "edge94": {"@length": 0.052088, "@source": "node92", "@target": "node96"}}, "node93": {"edge92": {"@length": 0.10885, "@source": "node93", "@target": "node94"}, "edge93": {"@length": 0.086221, "@source": "node93", "@target": "node95"}}, "node96": {"edge95": {"@length": 0.043569, "@source": "node96", "@target": "node97"}, "edge96": {"@length": 0.070739, "@source": "node96", "@target": "node98"}}, "node99": {"edge115": {"@length": 0.251611, "@source": "node99", "@target": "node117"}, "edge98": {"@length": 0.052381, "@source": "node99", "@target": "node100"}}, "tree2_ROOT": {"edge116": {"@length": 0.051162, "@source": "tree2_ROOT", "@target": "node118"}, "tree2_ROOT_EDGE": {"@source": "tree2_ROOT", "@target": "node90"}}}, "nodeById": {"node100": {"@label": "1.00"}, "node101": {"@label": "1.00"}, "node102": {"@otu": "otu26"}, "node103": {"@label": "1.00"}, "node104": {"@otu": "otu24"}, "node105": {"@label": "0.68"}, "node106": {"@otu": "otu25"}, "node107": {"@label": "1.00"}, "node108": {"@otu": "otu22"}, "node109": {"@otu": "otu23"}, "node110": {"@label": "1.00"}, "node111": {"@otu": "otu30"}, "node112": {"@label": "1.00"}, "node113": {"@label": "1.00"}, "node114": {"@otu": "otu29"}, "node115": {"@otu": "otu28"}, "node116": {"@otu": "otu27"}, "node117": {"@otu": "otu57"}, "node118": {"@label": "1.00"}, "node119": {"@label": "1.00"}, "node120": {"@label": "1.00"}, "node121": {"@otu": "otu16"}, "node122": {"@otu": "otu17"}, "node123": {"@otu": "otu15"}, "node124": {"@label": "1.00"}, "node125": {"@otu": "otu14"}, "node126": {"@label": "0.99"}, "node127": {"@otu": "otu13"}, "node128": {"@label": "1.00"}, "node129": {"@otu": "otu11"}, "node130": {"@otu": "otu12"}, "node131": {"@label": "1.00"}, "node132": {"@otu": "otu68"}, "node133": {"@label": "0.40"}, "node134": {"@label": "1.00"}, "node135": {"@otu": "otu10"}, "node136": {"@otu": "otu9"}, "node137": {"@otu": "otu8"}, "node138": {"@label": "1.00"}, "node139": {"@otu": "otu32"}, "node140": {"@label": "1.00"}, "node141": {"@otu": "otu34"}, "node142": {"@otu": "otu33"}, "node143": {"@otu": "otu35"}, "node144": {"@otu": "otu36"}, "node71": {"@label": "1.00"}, "node72": {"@label": "1.00"}, "node73": {"@label": "0.64"}, "node74": {"@label": "1.00"}, "node75": {"@label": "1.00"}, "node76": {"@label": "1.00"}, "node77": {"@otu": "otu4"}, "node78": {"@otu": "otu5"}, "node79": {"@label": "1.00"}, "node80": {"@otu": "otu2"}, "node81": {"@otu": "otu3"}, "node82": {"@otu": "otu1"}, "node83": {"@otu": "otu31"}, "node84": {"@label": "0.71"}, "node85": {"@label": "1.00"}, "node86": {"@label": "1.00"}, "node87": {"@otu": "otu7"}, "node88": {"@otu": "otu6"}, "node89": {"@label": "1.00"}, "node90": {"@label": "1.00"}, "node91": {"@label": "1.00"}, "node92": {"@label": "1.00"}, "node93": {"@label": "1.00"}, "node94": {"@otu": "otu19"}, "node95": {"@otu": "otu18"}, "node96": {"@label": "1.00"}, "node97": {"@otu": "otu21"}, "node98": {"@otu": "otu20"}, "node99": {"@label": "0.54"}, "tree2_ROOT": {"@root": true}}, "rootedge": [{"@id": "enode71", "@length": "0.0", "@target": "node71"}]}}}}}}, "branch2sha": {"master": "6bed60428352c04d00341ad513a8efb9442e4d8a"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "ad6e48991054431ad1be0f3c3b4a706278151e74", "author_name": "Benjamin Redelings", "author_email": "benjamin.redelings@gmail.com", "date": "Mon, 5 Nov 2018 20:12:01 +0000", "date_ISO_8601": "2018-11-05 20:12:01 +0000", "relative_date": "7 years ago", "message_subject": "Exclude a tree.", "message_body": "(Update document 'ot_895' via OpenTree API)"}, {"id": "eef251a6a65bd0c6523f5f99603c9fb50076dc60", "author_name": "pcart", "author_email": "ANONYMOUS", "date": "Sat, 22 Oct 2016 15:15:39 +0000", "date_ISO_8601": "2016-10-22 15:15:39 +0000", "relative_date": "9 years ago", "message_subject": "Update document 'ot_895' via OpenTree API"}, {"id": "da20688d9723b03c0a214a356c8739c3dbfdd51f", "author_name": "pcart", "author_email": "ANONYMOUS", "date": "Fri, 21 Oct 2016 15:16:03 +0000", "date_ISO_8601": "2016-10-21 15:16:03 +0000", "relative_date": "9 years ago", "message_subject": "mark ingroup", "message_body": "(Update document 'ot_895' via OpenTree API)"}, {"id": "0b73754df8deccac30cad76447c383d24c750fa7", "author_name": "pcart", "author_email": "ANONYMOUS", "date": "Thu, 20 Oct 2016 15:56:42 +0000", "date_ISO_8601": "2016-10-20 15:56:42 +0000", "relative_date": "9 years ago", "message_subject": "OTU Mapping", "message_body": "resolved all OTUs - changed the subfamily Keratoisidinae to the family Isididae\n\n(Update document 'ot_895' via OpenTree API)"}, {"id": "086c3296873caef01aaad8586889604dd1a9ddbe", "author_name": "pcart", "author_email": "ANONYMOUS", "date": "Mon, 17 Oct 2016 17:35:52 +0000", "date_ISO_8601": "2016-10-17 17:35:52 +0000", "relative_date": "9 years ago", "message_subject": "Update document 'ot_895' via OpenTree API"}, {"id": "7abbb2bcbdbc3435a4b46c263ad90e46485433e2", "author_name": "pcart", "author_email": "ANONYMOUS", "date": "Mon, 17 Oct 2016 17:33:39 +0000", "date_ISO_8601": "2016-10-17 17:33:39 +0000", "relative_date": "9 years ago", "message_subject": "Update document 'ot_895' via OpenTree API"}, {"id": "831434c44de2cce65ccbb20b5f6a141775d7a7ab", "author_name": "pcart", "author_email": "ANONYMOUS", "date": "Mon, 17 Oct 2016 17:09:27 +0000", "date_ISO_8601": "2016-10-17 17:09:27 +0000", "relative_date": "9 years ago", "message_subject": "Update document 'ot_895' via OpenTree API"}, {"id": "cf7f3e301e4c09650f2a363a622975125acac904", "author_name": "pcart", "author_email": "ANONYMOUS", "date": "Mon, 17 Oct 2016 17:06:48 +0000", "date_ISO_8601": "2016-10-17 17:06:48 +0000", "relative_date": "9 years ago", "message_subject": "Update document 'ot_895' via OpenTree API"}, {"id": "a4f699f430437aa75e69fb5b4831c389cfa0a6e0", "author_name": "pcart", "author_email": "ANONYMOUS", "date": "Mon, 17 Oct 2016 17:05:23 +0000", "date_ISO_8601": "2016-10-17 17:05:23 +0000", "relative_date": "9 years ago", "message_subject": "Update document 'ot_895' via OpenTree API"}]}