{"sha": "19ec8a2da4b35c55075f155f9fb4d01281774fe5", "data": {"nexml": {"@about": "#study", "@generator": "Open Tree API", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xhtml": "http://www.w3.org/1999/xhtml/vocab#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "Open Tree NexSON validation", "@id": "peyotl-validator", "@name": "api.opentreeoflife.org/validate", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": [], "otherProperty": [{"name": "pythonVersion", "value": "2.7.9"}, {"name": "pythonImplementation", "value": "CPython"}]}}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0"}]}, "^ot:annotationEvents": {"annotation": [{"@dateCreated": "2016-10-21T20:41:35.844Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"searchContext": {"$": "Cnidarians"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}]}, "useFuzzyMatching": false}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2016-10-21T20:41:35.844Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": [{"@filename": "20130219nano16S.nex.con", "@size": 1738, "@type": "nexus", "@url": "/curator/download/supporting_files.doc.9466802a302d05c5.32303133303231396e616e6f3136532e6e65782e636f6e.con", "description": {"$": "Source data for tree(s) 'tree1', 'tree2'"}, "sourceForTree": [{"$": "tree1"}, {"$": "tree2"}]}, {"@filename": "20130220nanocoi.nex.con", "@size": 1558, "@type": "nexus", "@url": "/curator/download/supporting_files.doc.a7e44c4849d74832.32303133303232306e616e6f636f692e6e65782e636f6e.con", "description": {"$": "Source data for tree(s) 'tree3', 'tree4'"}, "sourceForTree": [{"$": "tree3"}, {"$": "tree4"}]}]}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node10", "@treesID": "trees1", "@treeID": "tree1", "@nodeID": "node10"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node100", "@treesID": "trees1", "@treeID": "tree3", "@nodeID": "node100"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node101", "@treesID": "trees1", "@treeID": "tree3", "@nodeID": "node101"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node104", "@treesID": "trees1", "@treeID": "tree3", "@nodeID": "node104"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node11", "@treesID": "trees1", "@treeID": "tree1", "@nodeID": "node11"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node12", "@treesID": "trees1", "@treeID": "tree1", "@nodeID": "node12"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node13", "@treesID": "trees1", "@treeID": "tree1", "@nodeID": "node13"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node14", "@treesID": "trees1", "@treeID": "tree1", "@nodeID": "node14"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node15", "@treesID": "trees1", "@treeID": "tree1", "@nodeID": "node15"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node16", "@treesID": "trees1", "@treeID": "tree1", "@nodeID": "node16"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node20", "@treesID": "trees1", "@treeID": "tree1", "@nodeID": "node20"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node23", "@treesID": "trees1", "@treeID": "tree1", "@nodeID": "node23"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node24", "@treesID": "trees1", "@treeID": "tree1", "@nodeID": "node24"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node25", "@treesID": "trees1", "@treeID": "tree1", "@nodeID": "node25"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node28", "@treesID": "trees1", "@treeID": "tree1", "@nodeID": "node28"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node3", "@treesID": "trees1", "@treeID": "tree1", "@nodeID": "node3"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node30", "@treesID": "trees1", "@treeID": "tree1", "@nodeID": "node30"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node36", "@treesID": "trees1", "@treeID": "tree1", "@nodeID": "node36"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node4", "@treesID": "trees1", "@treeID": "tree1", "@nodeID": "node4"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node5", "@treesID": "trees1", "@treeID": "tree1", "@nodeID": "node5"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node6", "@treesID": "trees1", "@treeID": "tree1", "@nodeID": "node6"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node7", "@treesID": "trees1", "@treeID": "tree1", "@nodeID": "node7"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node8", "@treesID": "trees1", "@treeID": "tree1", "@nodeID": "node8"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node82", "@treesID": "trees1", "@treeID": "tree3", "@nodeID": "node82"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node84", "@treesID": "trees1", "@treeID": "tree3", "@nodeID": "node84"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node85", "@treesID": "trees1", "@treeID": "tree3", "@nodeID": "node85"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node86", "@treesID": "trees1", "@treeID": "tree3", "@nodeID": "node86"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node88", "@treesID": "trees1", "@treeID": "tree3", "@nodeID": "node88"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node9", "@treesID": "trees1", "@treeID": "tree1", "@nodeID": "node9"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node93", "@treesID": "trees1", "@treeID": "tree3", "@nodeID": "node93"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["@label"], "refersTo": {"@top": "trees", "@idref": "node98", "@treesID": "trees1", "@treeID": "tree3", "@nodeID": "node98"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu2", "otu3", "otu4", "otu5", "otu6", "otu7", "otu8"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu3", "otu33", "otu34", "otu35", "otu36", "otu4", "otu5"], "refersTo": {"@top": "otus", "@idref": "otus1", "@otusID": "otus1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:branchLengthTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree1", "@treesID": "trees1", "@treeID": "tree1"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree2", "@treesID": "trees1", "@treeID": "tree2"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree3", "@treesID": "trees1", "@treeID": "tree3"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree4", "@treesID": "trees1", "@treeID": "tree4"}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": ["tree1"], "^ot:comment": "", "^ot:curatorName": ["James Davis Reimer"], "^ot:dataDeposit": {"@href": ""}, "^ot:focalClade": 708619, "^ot:focalCladeOTTTaxonName": "Zoantharia", "^ot:notIntendedForSynthesis": false, "^ot:otusElementOrder": ["otus1"], "^ot:studyId": "ot_957", "^ot:studyPublication": {"@href": "http://dx.doi.org/10.1111/zoj.12075"}, "^ot:studyPublicationReference": "Takuma Fujii, James Davis Reimer, 2013, 'A new family of diminutive zooxanthellate zoanthids (Hexacorallia: Zoantharia)', Zoological Journal of the Linnean Society, vol. 169, no. 3, pp. 509-522", "^ot:studyYear": 2013, "^ot:tag": [], "^ot:treesElementOrder": ["trees1"], "^xhtml:license": {"@href": "http://creativecommons.org/publicdomain/zero/1.0/"}, "otusById": {"otus1": {"otuById": {"otu1": {"^ot:originalLabel": "Microzoanthusoccultus", "^ot:ottId": 606917, "^ot:ottTaxonName": "Microzoanthus occultus"}, "otu10": {"^ot:originalLabel": "Isaurus", "^ot:ottId": 316174, "^ot:ottTaxonName": "Isaurus tuberculatus"}, "otu11": {"^ot:originalLabel": "Neozoanthus", "^ot:ottId": 5441521, "^ot:ottTaxonName": "Neozoanthus uchina"}, "otu12": {"^ot:originalLabel": "Palytube", "^ot:ottId": 627878, "^ot:ottTaxonName": "Palythoa tuberculosa"}, "otu13": {"^ot:originalLabel": "Sphenopus", "^ot:ottId": 898378, "^ot:ottTaxonName": "Sphenopus marsupialis"}, "otu14": {"^ot:originalLabel": "Hydrogracilis", "^ot:ottId": 383183, "^ot:ottTaxonName": "Hydrozoanthus gracilis"}, "otu15": {"^ot:originalLabel": "Terrazoanthus", "^ot:ottId": 659857, "^ot:ottTaxonName": "Terrazoanthus sinnigeri"}, "otu16": {"^ot:originalLabel": "Antipathozoanthusmacaroni", "^ot:ottId": 122740, "^ot:ottTaxonName": "Antipathozoanthus macaronesicus"}, "otu17": {"^ot:originalLabel": "Corallizoanthus", "^ot:ottId": 357514, "^ot:ottTaxonName": "Corallizoanthus tsukaharai"}, "otu18": {"^ot:originalLabel": "Savalia", "^ot:ottId": 818825, "^ot:ottTaxonName": "Savalia savaglia"}, "otu19": {"^ot:originalLabel": "Parazoanthus", "^ot:ottId": 325490, "^ot:ottTaxonName": "Parazoanthus parasiticus"}, "otu2": {"^ot:originalLabel": "TF101Nano", "^ot:ottId": 5261861, "^ot:ottTaxonName": "Nanozoanthus harenaceus"}, "otu20": {"^ot:originalLabel": "Epicutressi", "^ot:ottId": 5676636, "^ot:ottTaxonName": "Bergia cutressi"}, "otu21": {"^ot:originalLabel": "Abyssoanthus", "^ot:ottId": 1089215, "^ot:ottTaxonName": "Abyssoanthus nankaiensis"}, "otu22": {"^ot:originalLabel": "Isozoanthus", "^ot:ottId": 257427, "^ot:ottTaxonName": "Isozoanthus giganteus"}, "otu23": {"^ot:originalLabel": "Urticina", "^ot:ottId": 278340, "^ot:ottTaxonName": "Urticina coriacea"}, "otu24": {"^ot:originalLabel": "Hydroazoanthusgracilis", "^ot:ottId": 383183, "^ot:ottTaxonName": "Hydrozoanthus gracilis"}, "otu25": {"^ot:originalLabel": "Parazoanthusswiftiimitochondrial", "^ot:ottId": 244152, "^ot:ottTaxonName": "Parazoanthus swiftii"}, "otu26": {"^ot:originalLabel": "ParazoanthusspNewCaledonia", "^ot:ottId": 302325, "^ot:ottTaxonName": "Parazoanthus"}, "otu27": {"^ot:originalLabel": "Savaliasavaglia", "^ot:ottId": 818825, "^ot:ottTaxonName": "Savalia savaglia"}, "otu28": {"^ot:originalLabel": "Epizoanthu", "^ot:ottId": 818823, "^ot:ottTaxonName": "Epizoanthus illoricatus"}, "otu3": {"^ot:originalLabel": "TF135Nano", "^ot:ottId": 5261861, "^ot:ottTaxonName": "Nanozoanthus harenaceus"}, "otu33": {"^ot:originalLabel": "T92Nano", "^ot:ottId": 5261861, "^ot:ottTaxonName": "Nanozoanthus harenaceus"}, "otu34": {"^ot:originalLabel": "YINR15Nanozoanthus", "^ot:ottId": 5261861, "^ot:ottTaxonName": "Nanozoanthus harenaceus"}, "otu35": {"^ot:originalLabel": "YINR16Nanozoanthus", "^ot:ottId": 5261861, "^ot:ottTaxonName": "Nanozoanthus harenaceus"}, "otu36": {"^ot:originalLabel": "T81", "^ot:ottId": 5261861, "^ot:ottTaxonName": "Nanozoanthus harenaceus"}, "otu37": {"^ot:originalLabel": "Urticinac", "^ot:ottId": 278340, "^ot:ottTaxonName": "Urticina coriacea"}, "otu38": {"^ot:originalLabel": "Mesozoanthus", "^ot:ottId": 696390, "^ot:ottTaxonName": "Mesozoanthus fossii"}, "otu39": {"^ot:originalLabel": "Palythoas", "^ot:ottId": 627878, "^ot:ottTaxonName": "Palythoa tuberculosa"}, "otu4": {"^ot:originalLabel": "TF136Nano", "^ot:ottId": 5261861, "^ot:ottTaxonName": "Nanozoanthus harenaceus"}, "otu40": {"^ot:originalLabel": "SphenopusAB441277", "^ot:ottId": 898378, "^ot:ottTaxonName": "Sphenopus marsupialis"}, "otu41": {"^ot:originalLabel": "Zoanthus", "^ot:ottId": 434773, "^ot:ottTaxonName": "Zoanthus sansibaricus"}, "otu5": {"^ot:originalLabel": "TF137Nano", "^ot:ottId": 5261861, "^ot:ottTaxonName": "Nanozoanthus harenaceus"}, "otu6": {"^ot:originalLabel": "TF92Nano", "^ot:ottId": 5261861, "^ot:ottTaxonName": "Nanozoanthus harenaceus"}, "otu7": {"^ot:originalLabel": "YINR15Nano", "^ot:ottId": 5261861, "^ot:ottTaxonName": "Nanozoanthus harenaceus"}, "otu8": {"^ot:originalLabel": "YINR16Nano", "^ot:ottId": 5261861, "^ot:ottTaxonName": "Nanozoanthus harenaceus"}, "otu9": {"^ot:originalLabel": "Zsansi", "^ot:ottId": 434773, "^ot:ottTaxonName": "Zoanthus sansibaricus"}}}}, "treesById": {"trees1": {"@otus": "otus1", "^ot:treeElementOrder": ["tree1", "tree2", "tree3", "tree4"], "treeById": {"tree1": {"@label": "16S Bayes (Fujii & Reimer 2013)", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:undefined", "^ot:curatedType": "Bayesian inference ", "^ot:inGroupClade": "node11", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:rootNodeId": "node36", "^ot:specifiedRoot": "node36", "^ot:tag": [], "^ot:unrootedTree": false, "edgeBySourceId": {"node1": {"edge1": {"@length": 0.205328, "@source": "node1", "@target": "node2"}, "edge2": {"@length": 0.222771, "@source": "node1", "@target": "node3"}}, "node11": {"edge10": {"@length": 0.179739, "@source": "node11", "@target": "node1"}, "edge11": {"@length": 0.053127, "@source": "node11", "@target": "node12"}}, "node12": {"edge12": {"@length": 0.045135, "@source": "node12", "@target": "node13"}, "edge34": {"@length": 0.170669, "@source": "node12", "@target": "node35"}}, "node13": {"edge13": {"@length": 0.022505, "@source": "node13", "@target": "node14"}, "edge22": {"@length": 0.015838, "@source": "node13", "@target": "node23"}}, "node14": {"edge14": {"@length": 0.023072, "@source": "node14", "@target": "node15"}, "edge19": {"@length": 0.005123, "@source": "node14", "@target": "node20"}}, "node15": {"edge15": {"@length": 0.005985, "@source": "node15", "@target": "node16"}, "edge18": {"@length": 0.014613, "@source": "node15", "@target": "node19"}}, "node16": {"edge16": {"@length": 0.005932, "@source": "node16", "@target": "node17"}, "edge17": {"@length": 0.001975, "@source": "node16", "@target": "node18"}}, "node20": {"edge20": {"@length": 0.007946, "@source": "node20", "@target": "node21"}, "edge21": {"@length": 0.00207, "@source": "node20", "@target": "node22"}}, "node23": {"edge23": {"@length": 0.032991, "@source": "node23", "@target": "node24"}, "edge33": {"@length": 0.032158, "@source": "node23", "@target": "node34"}}, "node24": {"edge24": {"@length": 0.00938, "@source": "node24", "@target": "node25"}, "edge27": {"@length": 0.018056, "@source": "node24", "@target": "node28"}}, "node25": {"edge25": {"@length": 0.015909, "@source": "node25", "@target": "node26"}, "edge26": {"@length": 0.008874, "@source": "node25", "@target": "node27"}}, "node28": {"edge28": {"@length": 0.035688, "@source": "node28", "@target": "node29"}, "edge29": {"@length": 0.012419, "@source": "node28", "@target": "node30"}}, "node3": {"edge3": {"@length": 0.001754, "@source": "node3", "@target": "node4"}, "edge4": {"@length": 0.001716, "@source": "node3", "@target": "node5"}, "edge5": {"@length": 0.001792, "@source": "node3", "@target": "node6"}, "edge6": {"@length": 0.001757, "@source": "node3", "@target": "node7"}, "edge7": {"@length": 0.001802, "@source": "node3", "@target": "node8"}, "edge8": {"@length": 0.001759, "@source": "node3", "@target": "node9"}, "edge9": {"@length": 0.001757, "@source": "node3", "@target": "node10"}}, "node30": {"edge30": {"@length": 0.013344, "@source": "node30", "@target": "node31"}, "edge31": {"@length": 0.017681, "@source": "node30", "@target": "node32"}, "edge32": {"@length": 0.008342, "@source": "node30", "@target": "node33"}}, "node36": {"edge35": {"@length": 0.057663, "@source": "node36", "@target": "node11"}, "edge36": {"@length": 0.102523, "@source": "node36", "@target": "node37"}, "edge37": {"@length": 0.13738, "@source": "node36", "@target": "node38"}}}, "nodeById": {"node1": {}, "node10": {"@otu": "otu8", "^ot:isTaxonExemplar": false}, "node11": {"@label": "1.00"}, "node12": {"@label": "0.99"}, "node13": {"@label": "1.00"}, "node14": {"@label": "0.74"}, "node15": {"@label": "0.92"}, "node16": {"@label": "0.99"}, "node17": {"@otu": "otu9"}, "node18": {"@otu": "otu10"}, "node19": {"@otu": "otu11"}, "node2": {"@otu": "otu1"}, "node20": {"@label": "0.78"}, "node21": {"@otu": "otu12"}, "node22": {"@otu": "otu13"}, "node23": {"@label": "0.90"}, "node24": {"@label": "1.00"}, "node25": {"@label": "0.99"}, "node26": {"@otu": "otu14"}, "node27": {"@otu": "otu15"}, "node28": {"@label": "0.99"}, "node29": {"@otu": "otu16"}, "node3": {"@label": "1.00"}, "node30": {"@label": "0.56"}, "node31": {"@otu": "otu17"}, "node32": {"@otu": "otu18"}, "node33": {"@otu": "otu19"}, "node34": {"@otu": "otu20"}, "node35": {"@otu": "otu21"}, "node36": {"@label": "0.96", "@root": true}, "node37": {"@otu": "otu22"}, "node38": {"@otu": "otu23"}, "node4": {"@otu": "otu2", "^ot:isTaxonExemplar": true}, "node5": {"@otu": "otu3", "^ot:isTaxonExemplar": false}, "node6": {"@otu": "otu4", "^ot:isTaxonExemplar": false}, "node7": {"@otu": "otu5", "^ot:isTaxonExemplar": false}, "node8": {"@otu": "otu6", "^ot:isTaxonExemplar": false}, "node9": {"@otu": "otu7", "^ot:isTaxonExemplar": false}}}, "tree2": {"@label": "con 50 majrule", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:undefined", "^ot:branchLengthTimeUnit": "", "^ot:curatedType": "Bayesian inference ", "^ot:inGroupClade": "node49", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:rootNodeId": "node74", "^ot:specifiedRoot": "node74", "^ot:tag": [], "^ot:unrootedTree": false, "edgeBySourceId": {"node39": {"edge38": {"@length": 0.205328, "@source": "node39", "@target": "node40"}, "edge39": {"@length": 0.222771, "@source": "node39", "@target": "node41"}}, "node41": {"edge40": {"@length": 0.001754, "@source": "node41", "@target": "node42"}, "edge41": {"@length": 0.001716, "@source": "node41", "@target": "node43"}, "edge42": {"@length": 0.001792, "@source": "node41", "@target": "node44"}, "edge43": {"@length": 0.001757, "@source": "node41", "@target": "node45"}, "edge44": {"@length": 0.001802, "@source": "node41", "@target": "node46"}, "edge45": {"@length": 0.001759, "@source": "node41", "@target": "node47"}, "edge46": {"@length": 0.001757, "@source": "node41", "@target": "node48"}}, "node49": {"edge47": {"@length": 0.179739, "@source": "node49", "@target": "node39"}, "edge48": {"@length": 0.053127, "@source": "node49", "@target": "node50"}}, "node50": {"edge49": {"@length": 0.045135, "@source": "node50", "@target": "node51"}, "edge71": {"@length": 0.170669, "@source": "node50", "@target": "node73"}}, "node51": {"edge50": {"@length": 0.022505, "@source": "node51", "@target": "node52"}, "edge59": {"@length": 0.015838, "@source": "node51", "@target": "node61"}}, "node52": {"edge51": {"@length": 0.023072, "@source": "node52", "@target": "node53"}, "edge56": {"@length": 0.005123, "@source": "node52", "@target": "node58"}}, "node53": {"edge52": {"@length": 0.005985, "@source": "node53", "@target": "node54"}, "edge55": {"@length": 0.014613, "@source": "node53", "@target": "node57"}}, "node54": {"edge53": {"@length": 0.005932, "@source": "node54", "@target": "node55"}, "edge54": {"@length": 0.001975, "@source": "node54", "@target": "node56"}}, "node58": {"edge57": {"@length": 0.007946, "@source": "node58", "@target": "node59"}, "edge58": {"@length": 0.00207, "@source": "node58", "@target": "node60"}}, "node61": {"edge60": {"@length": 0.032991, "@source": "node61", "@target": "node62"}, "edge70": {"@length": 0.032158, "@source": "node61", "@target": "node72"}}, "node62": {"edge61": {"@length": 0.00938, "@source": "node62", "@target": "node63"}, "edge64": {"@length": 0.018056, "@source": "node62", "@target": "node66"}}, "node63": {"edge62": {"@length": 0.015909, "@source": "node63", "@target": "node64"}, "edge63": {"@length": 0.008874, "@source": "node63", "@target": "node65"}}, "node66": {"edge65": {"@length": 0.035688, "@source": "node66", "@target": "node67"}, "edge66": {"@length": 0.012419, "@source": "node66", "@target": "node68"}}, "node68": {"edge67": {"@length": 0.013344, "@source": "node68", "@target": "node69"}, "edge68": {"@length": 0.017681, "@source": "node68", "@target": "node70"}, "edge69": {"@length": 0.008342, "@source": "node68", "@target": "node71"}}, "node74": {"edge72": {"@length": 0.057663, "@source": "node74", "@target": "node49"}, "edge73": {"@length": 0.102523, "@source": "node74", "@target": "node75"}, "edge74": {"@length": 0.13738, "@source": "node74", "@target": "node76"}}}, "nodeById": {"node39": {}, "node40": {"@otu": "otu1"}, "node41": {}, "node42": {"@otu": "otu2"}, "node43": {"@otu": "otu3"}, "node44": {"@otu": "otu4"}, "node45": {"@otu": "otu5"}, "node46": {"@otu": "otu6"}, "node47": {"@otu": "otu7"}, "node48": {"@otu": "otu8"}, "node49": {}, "node50": {}, "node51": {}, "node52": {}, "node53": {}, "node54": {}, "node55": {"@otu": "otu9"}, "node56": {"@otu": "otu10"}, "node57": {"@otu": "otu11"}, "node58": {}, "node59": {"@otu": "otu12"}, "node60": {"@otu": "otu13"}, "node61": {}, "node62": {}, "node63": {}, "node64": {"@otu": "otu14"}, "node65": {"@otu": "otu15"}, "node66": {}, "node67": {"@otu": "otu16"}, "node68": {}, "node69": {"@otu": "otu17"}, "node70": {"@otu": "otu18"}, "node71": {"@otu": "otu19"}, "node72": {"@otu": "otu20"}, "node73": {"@otu": "otu21"}, "node74": {"@root": true}, "node75": {"@otu": "otu22"}, "node76": {"@otu": "otu23"}}}, "tree3": {"@label": "con 50 majrule", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:undefined", "^ot:branchLengthTimeUnit": "", "^ot:curatedType": "Bayesian inference ", "^ot:inGroupClade": "node85", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:rootNodeId": "node84", "^ot:specifiedRoot": "node84", "^ot:tag": [], "^ot:unrootedTree": false, "edgeBySourceId": {"node100": {"edge101": {"@length": 0.022604, "@source": "node100", "@target": "node104"}, "edge98": {"@length": 0.00986, "@source": "node100", "@target": "node101"}}, "node101": {"edge100": {"@length": 0.002918, "@source": "node101", "@target": "node103"}, "edge99": {"@length": 0.002799, "@source": "node101", "@target": "node102"}}, "node104": {"edge102": {"@length": 0.02607, "@source": "node104", "@target": "node105"}, "edge103": {"@length": 0.013057, "@source": "node104", "@target": "node106"}}, "node77": {"edge75": {"@length": 0.03842, "@source": "node77", "@target": "node78"}, "edge76": {"@length": 0.003798, "@source": "node77", "@target": "node79"}, "edge77": {"@length": 0.008739, "@source": "node77", "@target": "node80"}, "edge78": {"@length": 0.009374, "@source": "node77", "@target": "node81"}, "edge95": {"@length": 0.01178, "@source": "node77", "@target": "node98"}}, "node82": {"edge79": {"@length": 0.104183, "@source": "node82", "@target": "node77"}, "edge80": {"@length": 0.090546, "@source": "node82", "@target": "node83"}}, "node84": {"edge81": {"@length": 0.206232, "@source": "node84", "@target": "node82"}, "edge82": {"@length": 0.108795, "@source": "node84", "@target": "node85"}, "edge94": {"@length": 0.252159, "@source": "node84", "@target": "node97"}}, "node85": {"edge83": {"@length": 0.140321, "@source": "node85", "@target": "node86"}, "edge93": {"@length": 0.274375, "@source": "node85", "@target": "node96"}}, "node86": {"edge84": {"@length": 0.036681, "@source": "node86", "@target": "node87"}, "edge85": {"@length": 0.033184, "@source": "node86", "@target": "node88"}}, "node88": {"edge86": {"@length": 0.00275, "@source": "node88", "@target": "node89"}, "edge87": {"@length": 0.002788, "@source": "node88", "@target": "node90"}, "edge88": {"@length": 0.002838, "@source": "node88", "@target": "node91"}, "edge89": {"@length": 0.00273, "@source": "node88", "@target": "node92"}, "edge90": {"@length": 0.00797, "@source": "node88", "@target": "node93"}}, "node93": {"edge91": {"@length": 0.002799, "@source": "node93", "@target": "node94"}, "edge92": {"@length": 0.002841, "@source": "node93", "@target": "node95"}}, "node98": {"edge96": {"@length": 0.018653, "@source": "node98", "@target": "node99"}, "edge97": {"@length": 0.031456, "@source": "node98", "@target": "node100"}}}, "nodeById": {"node100": {"@label": "0.99"}, "node101": {"@label": "0.91"}, "node102": {"@otu": "otu39"}, "node103": {"@otu": "otu40"}, "node104": {"@label": "0.99"}, "node105": {"@otu": "otu41"}, "node106": {"@otu": "otu11"}, "node77": {}, "node78": {"@otu": "otu24"}, "node79": {"@otu": "otu25"}, "node80": {"@otu": "otu26"}, "node81": {"@otu": "otu27"}, "node82": {"@label": "0.99"}, "node83": {"@otu": "otu28"}, "node84": {"@label": "1.00", "@root": true}, "node85": {"@label": "0.91"}, "node86": {"@label": "1.00"}, "node87": {"@otu": "otu22"}, "node88": {"@label": "0.93"}, "node89": {"@otu": "otu3"}, "node90": {"@otu": "otu4"}, "node91": {"@otu": "otu5"}, "node92": {"@otu": "otu33"}, "node93": {"@label": "0.95"}, "node94": {"@otu": "otu34"}, "node95": {"@otu": "otu35"}, "node96": {"@otu": "otu36"}, "node97": {"@otu": "otu37"}, "node98": {"@label": "0.53"}, "node99": {"@otu": "otu38"}}}, "tree4": {"@label": "con 50 majrule", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:undefined", "^ot:branchLengthTimeUnit": "", "^ot:curatedType": "Bayesian inference ", "^ot:inGroupClade": "node115", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:rootNodeId": "node114", "^ot:specifiedRoot": "node114", "^ot:tag": [], "^ot:unrootedTree": false, "edgeBySourceId": {"node107": {"edge104": {"@length": 0.03842, "@source": "node107", "@target": "node108"}, "edge105": {"@length": 0.003798, "@source": "node107", "@target": "node109"}, "edge106": {"@length": 0.008739, "@source": "node107", "@target": "node110"}, "edge107": {"@length": 0.009374, "@source": "node107", "@target": "node111"}, "edge124": {"@length": 0.01178, "@source": "node107", "@target": "node128"}}, "node112": {"edge108": {"@length": 0.104183, "@source": "node112", "@target": "node107"}, "edge109": {"@length": 0.090546, "@source": "node112", "@target": "node113"}}, "node114": {"edge110": {"@length": 0.206232, "@source": "node114", "@target": "node112"}, "edge111": {"@length": 0.108795, "@source": "node114", "@target": "node115"}, "edge123": {"@length": 0.252159, "@source": "node114", "@target": "node127"}}, "node115": {"edge112": {"@length": 0.140321, "@source": "node115", "@target": "node116"}, "edge122": {"@length": 0.274375, "@source": "node115", "@target": "node126"}}, "node116": {"edge113": {"@length": 0.036681, "@source": "node116", "@target": "node117"}, "edge114": {"@length": 0.033184, "@source": "node116", "@target": "node118"}}, "node118": {"edge115": {"@length": 0.00275, "@source": "node118", "@target": "node119"}, "edge116": {"@length": 0.002788, "@source": "node118", "@target": "node120"}, "edge117": {"@length": 0.002838, "@source": "node118", "@target": "node121"}, "edge118": {"@length": 0.00273, "@source": "node118", "@target": "node122"}, "edge119": {"@length": 0.00797, "@source": "node118", "@target": "node123"}}, "node123": {"edge120": {"@length": 0.002799, "@source": "node123", "@target": "node124"}, "edge121": {"@length": 0.002841, "@source": "node123", "@target": "node125"}}, "node128": {"edge125": {"@length": 0.018653, "@source": "node128", "@target": "node129"}, "edge126": {"@length": 0.031456, "@source": "node128", "@target": "node130"}}, "node130": {"edge127": {"@length": 0.00986, "@source": "node130", "@target": "node131"}, "edge130": {"@length": 0.022604, "@source": "node130", "@target": "node134"}}, "node131": {"edge128": {"@length": 0.002799, "@source": "node131", "@target": "node132"}, "edge129": {"@length": 0.002918, "@source": "node131", "@target": "node133"}}, "node134": {"edge131": {"@length": 0.02607, "@source": "node134", "@target": "node135"}, "edge132": {"@length": 0.013057, "@source": "node134", "@target": "node136"}}}, "nodeById": {"node107": {}, "node108": {"@otu": "otu24"}, "node109": {"@otu": "otu25"}, "node110": {"@otu": "otu26"}, "node111": {"@otu": "otu27"}, "node112": {}, "node113": {"@otu": "otu28"}, "node114": {"@root": true}, "node115": {}, "node116": {}, "node117": {"@otu": "otu22"}, "node118": {}, "node119": {"@otu": "otu3"}, "node120": {"@otu": "otu4"}, "node121": {"@otu": "otu5"}, "node122": {"@otu": "otu33"}, "node123": {}, "node124": {"@otu": "otu34"}, "node125": {"@otu": "otu35"}, "node126": {"@otu": "otu36"}, "node127": {"@otu": "otu37"}, "node128": {}, "node129": {"@otu": "otu38"}, "node130": {}, "node131": {}, "node132": {"@otu": "otu39"}, "node133": {"@otu": "otu40"}, "node134": {}, "node135": {"@otu": "otu41"}, "node136": {"@otu": "otu11"}}}}}}}}, "branch2sha": {"master": "19ec8a2da4b35c55075f155f9fb4d01281774fe5"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "8f8ff5ab012794db0efab24be1edc7f36b613002", "author_name": "James Davis Reimer", "author_email": "jreimer@sci.u-ryukyu.ac.jp", "date": "Sat, 22 Oct 2016 15:52:38 +0000", "date_ISO_8601": "2016-10-22 15:52:38 +0000", "relative_date": "10 years ago", "message_subject": "Update document 'ot_957' via OpenTree API"}, {"id": "19341d459b24c45250e02d2abc0a0bc2618c3c7b", "author_name": "James Davis Reimer", "author_email": "jreimer@sci.u-ryukyu.ac.jp", "date": "Fri, 21 Oct 2016 20:56:38 +0000", "date_ISO_8601": "2016-10-21 20:56:38 +0000", "relative_date": "10 years ago", "message_subject": "Mapped OTUs.", "message_body": "(Update document 'ot_957' via OpenTree API)"}, {"id": "5030842675820eb815207c79e76c17cdee61bcae", "author_name": "James Davis Reimer", "author_email": "jreimer@sci.u-ryukyu.ac.jp", "date": "Fri, 21 Oct 2016 20:53:25 +0000", "date_ISO_8601": "2016-10-21 20:53:25 +0000", "relative_date": "10 years ago", "message_subject": "Mapped OTUs.", "message_body": "(Update document 'ot_957' via OpenTree API)"}, {"id": "6c2abf26524640eaecdd6c0f70cdb3606fae2315", "author_name": "James Davis Reimer", "author_email": "jreimer@sci.u-ryukyu.ac.jp", "date": "Fri, 21 Oct 2016 20:41:34 +0000", "date_ISO_8601": "2016-10-21 20:41:34 +0000", "relative_date": "10 years ago", "message_subject": "Update document 'ot_957' via OpenTree API"}]}