pythonVersion 2.7.3 pythonImplementation CPython All life tree1 tree2 tree3 tree4 tree5 tree6 tree7 tree8 tree9 ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar ^ot:isTaxonExemplar otu135 otu146 otu137 otu139 otu148 otu169 otu151 otu152 otu159 otu162 otu164 otu161 otu165 otu166 otu167 otu187 otu220 otu188 otu222 otu189 otu221 otu218 otu251 otu306 otu324 otu307 otu322 otu323 otu308 otu325 otu493 otu496 otu530 otu536 otu531 otu537 otu637 otu638 otu77 otu83 otu85 ^ot:comment ^ot:branchLengthMode ^ot:messages ^ot:messages ^ot:branchLengthMode ^ot:messages ^ot:messages ^ot:messages ^ot:messages ^ot:messages ^ot:messages ^ot:messages ^ot:ottId tree1 tree2 tree3 tree4 tree5 tree6 tree7 tree8 tree9 lzogbaum 6929 Rhizaria false ot_97 Yoshiyuki Ishitani, Sohta A. Ishikawa, Yuji Inagaki, Masashi Tsuchiya, Kozo Takahashi, Kiyotaka Takishita, 2011, 'Multigene phylogenetic analyses including diverse radiolarian species support the “Retaria” hypothesis — The sister relationship of Radiolaria and Foraminifera', Marine Micropaleontology, vol. 81, no. 1-2, pp. 32-42 2011 Oikopleura sp. AF158726 846403 Oikopleura Blastocladiella emersonii X90410 263372 Blastocladiella emersonii Cyanidioschyzon merolae D32140 85503 Cyanidioschyzon merolae Cyanophora paradoxa U90325 878960 Cyanophora paradoxa Glaucocystis nostochinearum DQ980420 716815 Glaucocystis nostochinearum Volvox carteri f. nagariensis XM_002955490 187583 Volvox carteri f. nagariensis Chlamydomonas reinhardtii XM_001699016 33153 Chlamydomonas reinhardtii Mesostigma viride AF061020 976425 Mesostigma viride Oryza sativa X15865 709894 Oryza sativa Arabidopsis thaliana AY089032 309263 Arabidopsis thaliana Pisum sativum X67666 359905 Pisum sativum Raphidiophrys ambigua AY283746 607131 Raphidiophrys ambigua Entomophaga aulicae U35394 931417 Entomophaga aulicae Euglena gracilis AF057161 1073327 Euglena gracilis Leishmania infantum GQ246779 243214 Leishmania infantum Trypanosoma cruzi AY785629 779555 Trypanosoma cruzi Trypanosoma brucei M20310 494245 Trypanosoma brucei Trichomonas vaginalis EU076584 745845 Trichomonas vaginalis Paramecium tetraurelia AF043608 568130 Paramecium tetraurelia Tetrahymena thermophila M13939 180195 Tetrahymena thermophila Naegleria gruberi AF101729 641873 Naegleria gruberi Heterocapsa triquetra EF640328 882515 Heterocapsa triquetra Oxyrrhis marina AF482402 746955 Oxyrrhis marina Cryptococcus neoformans L14067 634633 Cryptococcus neoformans Perkinsus marinus AY436365 438694 Perkinsus marinus Plasmodium falciparum AF177282 201128 Plasmodium falciparum Toxoplasma gondii U10429 252145 Toxoplasma gondii Cryptosporidium parvum XM_001388245 775251 Cryptosporidium parvum Ectocarpus siliculosus FN648380 878345 Ectocarpus siliculosus Heterosigma akashiwo AY729842 725551 Heterosigma akashiwo Apodachlya brachynema AY729840 395251 Apodachlya brachynema Phytophthora palmivora AY729846 405030 Phytophthora palmivora Thalassiosira pseudonana XM_002294881 753596 Thalassiosira pseudonana Phaeodactylum tricornutum EF553461 1095879 Phaeodactylum tricornutum Pneumocystis carinii M86760 352919 Pneumocystis carinii Cryptococcus neoformans var. neoformans XM_566845 48333 Cryptococcus neoformans var. neoformans Saccharomyces cerevisiae FN985054 908549 Saccharomyces cerevisiae Candida albicans AJ389057 1034966 Candida albicans Schizosaccharomyces pombe NM001021513 990004 Schizosaccharomyces pombe Pneumocystis carinii D49831 352919 Pneumocystis carinii Dimorpha Dimorpha sp. EF455772 Lecythium sp. AY283756 4019288 Lecythium sp. Lotharella amoeboformis AF363531 74170 Lotharella amoeboformis Lotharella globosa AY452196 717246 Lotharella globosa Lotharella amoeboformis AF363532 74170 Lotharella amoeboformis Arxula adeninivorans Z50840 350064 Blastobotrys adeninivorans Bigelowiella natans EF455788 5260606 Bigelowiella natans Thaumatomonas seravini EF455755 592137 Thaumatomonas seravini Cercomonas sp. AF363536 554897 Cercomonas Thaumatomonas sp. DQ980435 554905 Thaumatomonas sp. Hedriocystis reticulata AY283755 446837 Hedriocystis reticulata Clathrulina elegans AY283754 972895 Clathrulina elegans Reticulomyxa filosa 2 AJ132371 Ammonia sp. 2 AJ132373 1089030 Ammonia sp. 2306 Allogromia sp. 2 AY763940 440174 Allogromia sp. 12957 Sphaerozoum punctatum CL14 AB613246 1093165 Sphaerozoum punctatum Candida albicans L07796 1034966 Candida albicans Collozoum amoeboides CL02 AB613237 409680 Collozoum amoeboides Collozoum inerme AY507123 614582 Collozoum inerme Collozoum inerme AY507124 614582 Collozoum inerme Thalassicolla pellucida AY507125 614581 Thalassicolla pellucida Urosporidium crescens AY450422 898300 Urosporidium crescens Spongospora subterranea AY452193 41886 Spongospora subterranea Sorosphaera veronicae AY452190 423143 Sorosphaera veronicae Plasmodiophora brassicae AY452179 934409 Plasmodiophora brassicae Haplosporidium costale AY450407 90740 Haplosporidium costale Minchinia teredinis AY450420 655792 Minchinia teredinis Mucor racemosus AJ271061 363298 Mucor racemosus Minchinia tapetis AY450417 201919 Minchinia tapetis Haplosporidium louisiana AY450410 898305 Haplosporidium louisiana Minchinia teredinis AY450421 655792 Minchinia teredinis Haplosporidium nelsoni AY450412 747229 Haplosporidium nelsoni Minchinia teredinis AY450419 655792 Minchinia teredinis Haplosporidium louisiana AY450411 898305 Haplosporidium louisiana Gromia oviformis 2 AY571669 962362 Gromia oviformis Gromia oviformis 1 AY305013 962362 Gromia oviformis Filoreta tenera EF514505 4021632 Corallomyxa tenera Allogromia sp. 1 AJ132370 440174 Allogromia sp. 12957 Rhizomucor miehei AF198253 735964 Rhizomucor miehei Planoglabratella opercularis AB219461 311748 Planoglabratella opercularis Reticulomyxa filosa 1 AJ132374 434296 Reticulomyxa filosa Ammonia sp. 1 AJ132372 5219149 Ammonia sp. 1 RS-2013 Larcopyle buetschlii KT80 CL02 AB613229 181612 Larcopyle butschlii Caenorhabditis elegans NM_065262 395048 Caenorhabditis elegans (species in subfamily Peloderinae) Mus musculus BC085256 542509 Mus musculus Homo sapiens K00558 770315 Homo sapiens Drosophila melanogaster BT012506 505714 Drosophila melanogaster Monosiga brevicollis CH991544 281703 Monosiga brevicollis Candida albicans U38534 1034966 Candida albicans Hyphochytrium catenoides X80346 435099 Hyphochytrium catenoides Pneumocystis carinii M95294 352919 Pneumocystis carinii Cryptococcus neoformans var. neoformans XM_568869 48333 Cryptococcus neoformans var. neoformans Spizellomyces punctatus AF162085 708156 Spizellomyces punctatus Apusomonas proboscidea DQ980530 918390 Apusomonas proboscidea Monocercomonas sp. U66903 171544 Monocercomonas sp. Trichomitus batrachorum U66904 147994 Trichomitus batrachorum Andalucia incarcerata AF267179 813154 Andalucia incarcerata Larcopyle buetschlii KT080 CL06 AB613227 181612 Larcopyle butschlii Sphaerozoum punctatum CL18 AB613245 1093165 Sphaerozoum punctatum Collozoum amoeboides CL13 AB613236 409680 Collozoum amoeboides Apodachlya brachynema AF235936 395251 Apodachlya brachynema Carpediemonas membranifera AY117421 260292 Carpediemonas membranifera Giardia lamblia XM_001705667 694358 Giardia intestinalis Spironucleus barkhanus U29440 614625 Spironucleus barkhanus Spironucleus muris U37079 247669 Spironucleus muris Hexamita inflata U37080 202782 Hexamita inflata Dictyostelium discoideum L13999 160850 Dictyostelium discoideum Arachnula sp. EU273437 1082076 Arachnula sp. CL12 Cholamonas cyrtodiopsidis FJ973413 879684 Cholamonas cyrtodiopsidis Phaeodactylum tricornutum XM_002180620 1095879 Phaeodactylum tricornutum Ectocarpus siliculosus FN648741 878345 Ectocarpus siliculosus Styela plicata AF158724 750985 Styela plicata Phytophthora megasperma X75632 775722 Phytophthora megasperma Jakoba libera AF267180 837682 Jakoba libera Thaumatomonas seravini EF455794 592137 Thaumatomonas seravini Capsellina sp. GQ377659 505597 Capsellina sp. ATCC 50039 Bodomorpha minima FJ973412 644464 Bodomorpha minima Cercomonas sp. AF043927 1081308 Cercomonas sp. ATCC 50316 Bigelowiella natans AY542971 5260606 Bigelowiella natans Chlamydomonas reinhardtii AY182002 33153 Chlamydomonas reinhardtii Volvox carteri f nagariensis XM_002950961 187583 Volvox carteri f. nagariensis Cyanophora paradoxa DQ113470 878960 Cyanophora paradoxa Euglena gracilis Z22877 1073327 Euglena gracilis Skeletonema pseudocostatum Y11512 459898 Skeletonema pseudocostatum Leishmania donovani U09612 766598 Leishmania donovani Trypanosoma brucei XM_001218939 494245 Trypanosoma brucei Trypanosoma cruzi M96849 779555 Trypanosoma cruzi Acrasis rosea U66905 765113 Acrasis rosea Naegleria gruberi XM_002680043 641873 Naegleria gruberi Reclinomonas americana AF267182 429200 Reclinomonas americana Ammonia tepida AY818729 259251 Ammonia tepida Miliammina fusca AY818730 927205 Miliammina fusca Reticulomyxa filosa X96475 434296 Reticulomyxa filosa Rhabdammina cornuta AY818731 155294 Rhabdammina cornuta Phaeodactylum tricornutum EF553458 1095879 Phaeodactylum tricornutum Larcopyle buetschlii KT080 CL08 AB613228 181612 Larcopyle butschlii Collozoum amoeboides CL08 AB613235 409680 Collozoum amoeboides Sphaerozoum punctatum CL20 AB613244 1093165 Sphaerozoum punctatum Glaucocystis nostochinearum DQ980492 716815 Glaucocystis nostochinearum Mesostigma viride DQ113478 976425 Mesostigma viride Arabidopsis thaliana AY143895 309263 Arabidopsis thaliana Pisum sativum U12589 359905 Pisum sativum Oryza sativa AF182523 709894 Oryza sativa Paramecium tetraurelia X99490 568130 Paramecium tetraurelia Epistylis sp. FJ883554 4922643 Epistylis sp. 1 JG-2011 Tribonema aequale Y07978 898586 Tribonema aequale Tetrahymena thermophila M86723 180195 Tetrahymena thermophila Tetrahymena pyriformis X12767 754194 Tetrahymena pyriformis Palpitomonas bilix AB508341 4739017 Palpitomonas bilix Oxytricha granulifera Z11763 650724 Oxytricha granulifera Stylonychia lemnae X12365 650734 Stylonychia lemnae (species ncbi:5949 in subclass Hypotrichia) Toxoplasma gondii XM_002364766 252145 Toxoplasma gondii Plasmodium falciparum XM_001351490 201128 Plasmodium falciparum Pavlova gyrans EF455740 536545 Pavlova gyrans Prymnesium parvum AY729837 937580 Prymnesium parvum Perkinsus marinus AF482399 438694 Perkinsus marinus Ectocarpus siliculosus EF990201 878345 Ectocarpus siliculosus Heterocapsa triquetra AF482412 882515 Heterocapsa triquetra Guillardia theta AF050090 5247740 Guillardia theta Goniomonas truncata DQ980534 914450 Goniomonas truncata Gymnophrys sp. FJ973414 248515 Cercomonas sp. C-83 Massisteria marina GQ377649 481578 Massisteria marina Telonema subtile AM237835 4738975 Telonema subtile Apodachlya brachynema AY729828 395251 Apodachlya brachynema Cyanidioschyzon merolae AB095180 85503 Cyanidioschyzon merolae Raphidiophrys contractilis AB196985 587061 Raphidiophrys contractilis Filoreta tenera EF514502 5247621 Filoreta Nannochloropsis salina Y07974 694371 Nannochloropsis salina Planoglabratella opercularis AB219462 311748 Planoglabratella opercularis Reticulomyxa filosa Y16244 434296 Reticulomyxa filosa Drosophila melanogaster NM079071 505714 Drosophila melanogaster Homo sapiens BC006570 770315 Homo sapiens Mus musculus M28730 542509 Mus musculus Trichoplax adhaerens FJ387017 570365 Trichoplax adhaerens Cryptococcus neoformans var. neoformans XM_771811 48333 Cryptococcus neoformans var. neoformans Candida albicans M19398 1034966 Candida albicans Pneumocystis carinii X62113 352919 Pneumocystis carinii Oxytricha sp. AF508764 854511 Oxytricha sp. Spizellomyces punctatus AF162076 708156 Spizellomyces punctatus Trichomonas vaginalis L05468 745845 Trichomonas vaginalis Carpediemonas membranifera AY117422 260292 Carpediemonas membranifera Giardia lamblia X06748 694358 Giardia intestinalis Spironucleus barkhanus U29441 614625 Spironucleus barkhanus Malawimonas jakobiformis AF267185 935423 Malawimonas jakobiformis Apusomonas proboscidea DQ980518 918390 Apusomonas proboscidea Dictyostelium discoideum AF030823 160850 Dictyostelium discoideum Andalucia incarcerata AF267183 813154 Andalucia incarcerata Euglena gracilis X15797 1073327 Euglena gracilis Spathidium amphoriforme AF223570 589937 Spathidium amphoriforme Naegleria gruberi Z13961 641873 Naegleria gruberi Jakoba libera AF267184 837682 Jakoba libera Pavlova gyrans FJ973415 536545 Pavlova gyrans Trypanosoma brucei FN554964 494245 Trypanosoma brucei Leishmania mexicana AF345947 766611 Leishmania mexicana Guillardia theta AF050092 5247740 Guillardia theta Goniomonas truncata DQ980516 914450 Goniomonas truncata Telonema antarcticum AM237831 4738976 Telonema antarcticum Chlamydomonas reinhardtii K03281 33153 Chlamydomonas reinhardtii Euplotes aediculatus AF223571 650729 Euplotes aediculatus Mesostigma viride DQ113480 976425 Mesostigma viride Oryza sativa L33263 709894 Oryza sativa Pisum sativum X54844 359905 Pisum sativum Arabidiopsis thaliana AK117262 309263 Arabidopsis thaliana Glaucocystis nostochinearum DQ980521 716815 Glaucocystis nostochinearum Bodomorpha minima GQ377660 644464 Bodomorpha minima Heteromita globosa GQ37767 554899 Heteromita globosa Cercomonas sp. AF119173 1081308 Cercomonas sp. ATCC 50316 Gymnophrys sp. GQ377646 248515 Cercomonas sp. C-83 Bigelowiella natans AF043935 5260606 Bigelowiella natans Tetrahymena thermophila X54512 180195 Tetrahymena thermophila Massisteria marina GQ377980 481578 Massisteria marina Thaumatomonas sp. DQ980529 554905 Thaumatomonas sp. Cholamonas cyrtodiopsidis FJ973424 879684 Cholamonas cyrtodiopsidis Cyanophora paradoxa AF092952 878960 Cyanophora paradoxa Pythium ultimum AF218256 504918 Pythium ultimum Apodachlya brachynema AY729815 395251 Apodachlya brachynema Achlya klebsiana J05597 555787 Achlya klebsiana Ectocarpus siliculosus FN648390 878345 Ectocarpus siliculosus Phaeodactylum tricornutum AY729821 1095879 Phaeodactylum tricornutum Heterocapsa triquetra AF482414 882515 Heterocapsa triquetra Herdmania momus X53538 1023784 Herdmania momus Paramecium tetraurelia EU828456 568130 Paramecium tetraurelia Tetrahymena thermophila XM_001023006 180195 Tetrahymena thermophila Plasmodium falciparum M28398 201128 Plasmodium falciparum Toxoplasma gondii M20025 252145 Toxoplasma gondii Perkinsus marinus AF482401 438694 Perkinsus marinus Oxytricha granulifera AF510205 650724 Oxytricha granulifera Plasmodiophora brassicae AM411665 934409 Plasmodiophora brassicae Collozoum amoeboides CL20 AB613234 409680 Collozoum amoeboides Sphaerozoum punctatum CL03 AB613243 1093165 Sphaerozoum punctatum Larcopyle buetschlii KT080 CL06 AB613225 181612 Larcopyle butschlii Filoreta tenera EF514506 4021632 Corallomyxa tenera Theileria parva AF013419 302422 Theileria parva Cyanidioschyzon merolae AB095181 85503 Cyanidioschyzon merolae Raphidiophrys contractilis AB196986 587061 Raphidiophrys contractilis Gromia sp. antarctica HM244877 800020 Gromia sp. Antarctica Allogromia sp. AY818725 440174 Allogromia sp. 12957 Allogromia katicollaris Y16168 640787 Allogromia laticollaris Crithionina delacai AY818714 425259 Crithionina delacai Planoglabratella opercularis AB219463 311748 Planoglabratella opercularis Pyrgo peruviana AY818716 326514 Pyrgo peruviana Miliammina fusca AY818724 927205 Miliammina fusca Cornuspira antarctica AY818721 493280 Cornuspira antarctica Eimeria tenella AF026388 775246 Eimeria tenella Rhabdammina cornuta AY818723 155294 Rhabdammina cornuta Reticulomyxa filosa X96478 434296 Reticulomyxa filosa Sphaerozoum punctatum CL18 AB613242 1093165 Sphaerozoum punctatum Sphaerozoum punctatum CL021 AB613241 1093165 Sphaerozoum punctatum Collozoum amoeboides CL08 AB613233 409680 Collozoum amoeboides Larcopyle buetschlii KT080 CL05 AB613226 181612 Larcopyle butschlii Drosophila melanogaster 505714 Drosophila melanogaster Mus musculus 542509 Mus musculus Monosiga brevicollis 281703 Monosiga brevicollis Cryptococcus neoformans 634633 Cryptococcus neoformans Toxoplasma gondii X75453 252145 Toxoplasma gondii Pneumocystis sp. composite 1061721 Pneumocystis sp. ZL2005b Candida albicans 1034966 Candida albicans Apusomonas proboscidea 918390 Apusomonas proboscidea Guillardia theta 5247740 Guillardia theta Goniomonas truncata 914450 Goniomonas truncata Cyanophora paradoxa 878960 Cyanophora paradoxa Glaucocystis nostochinearum 716815 Glaucocystis nostochinearum Cyanidioschyzon meloae 85503 Cyanidioschyzon merolae Chlamydomonas reinhardtii 33153 Chlamydomonas reinhardtii Oryza sativa 709894 Oryza sativa Sarcocystis tenella AF076899 252139 Sarcocystis tenella Mesostigma viride 976425 Mesostigma viride Pavlova gyrans 536545 Pavlova gyrans Prymnesium parvum 937580 Prymnesium parvum Paramecium tetraurelia 568130 Paramecium tetraurelia Tetrahymena thermophila 180195 Tetrahymena thermophila Oxytricha sp. composite 854511 Oxytricha sp. Toxoplasma gondii 252145 Toxoplasma gondii Heterocapsa triquetra 882515 Heterocapsa triquetra Perkinsus sp. composite 674170 Perkinsus sp. 'isolate G117' Trypanosoma brucei 494245 Trypanosoma brucei Heterocapsa triquetra EF613355 882515 Heterocapsa triquetra Trypanosoma cruzi 779555 Trypanosoma cruzi Euglena gracilis 1073327 Euglena gracilis Apodachlya brachynema 395251 Apodachlya brachynema Phaeodactylum tricornutum 1095879 Phaeodactylum tricornutum Ectocarpus siliculosus 878345 Ectocarpus siliculosus Thaumatomonas sp. composite 554905 Thaumatomonas sp. Bigelowiella natans 5260606 Bigelowiella natans Plasmodiophora brassicae 934409 Plasmodiophora brassicae Gromia oviformis 962362 Gromia oviformis Ammonia sp. composite 158522 Ammonia Prorocentrum micans M14649 797786 Prorocentrum micans Foraminifera composite 936399 Foraminifera Larcopyle buetschlii KT080 181612 Larcopyle butschlii Collozoum amoeboides 409680 Collozoum amoeboides Sphaerozoum punctatum 1093165 Sphaerozoum punctatum Drosophila melanogaste 505714 Drosophila melanogaster Perkinsus chesapeaki AY305327 662165 Perkinsus chesapeaki Pavlova sp. composite 415316 Pavlova sp. AC19 Pavlova gyrans FJ973368 536545 Pavlova gyrans Trypanosoma sp. composite 800532 Trypanosoma sp. Fly9 Leucosolenia sp. AF100945 104610 Leucosolenia sp. AR-2003 Trichoplax adhaerens L10828 570365 Trichoplax adhaerens Mytilus edulis L24489 499751 Mytilus edulis Salmo trutta X98839 688332 Salmo trutta Mus musculus X00686 542509 Mus musculus Gallus gallus AF173612 153563 Gallus gallus Diaphanoeca grandis L10824 726085 Diaphanoeca grandis Monosiga brevicollis AF100940 281703 Monosiga brevicollis Prymnesium parvum f. patelliferum 804499 Prymnesium parvum f. patelliferum Spizellomyces acuminatus M59759 873125 Spizellomyces acuminatus Cryptococcus neoformans L05428 634633 Cryptococcus neoformans Amanita muscaria AF026631 75257 Amanita muscaria Pneumocystis wakefieldiae L27658 435892 Pneumocystis wakefieldiae Candida albicans X53497 1034966 Candida albicans Vannella anglica AF099101 679939 Vannella anglica Dictyostelium discoideum X00601 160850 Dictyostelium discoideum Physarum polycephalum X13160 422679 Physarum polycephalum Euglena gracilis M12677 1073327 Euglena gracilis Trypanosoma brucei M12676 494245 Trypanosoma brucei Thalia democratica AF158725 674935 Thalia democratica Gracilaria verrucosa Y11508 971132 Gracilariopsis longissima Trypanosoma cruzi M31432 779555 Trypanosoma cruzi Filamoeba nolandi AF293896 263572 Filamoeba nolandi Gephyramoeba sp. AF293897 470549 Gephyramoeba sp. ATCC50654 Hartmannella vermiformis M95168 68580 Vermamoeba vermiformis Echinamoeba exundans AF293895 263574 Echinamoeba exundans Saccamoeba limax AF293902 930700 Saccamoeba limax Amoeba proteus AJ314604 68587 Amoeba proteus Leptomyxa reticulata AF293898 263578 Leptomyxa reticulata Goniomonas truncata U03072 914450 Goniomonas truncata Chilomonas paramecium L28811 303531 Cryptomonas paramecium Pamaria palmata Y11506 5305439 Clavaria palmata Guillardia theta X57162 5247740 Guillardia theta Cyanophora paradoxa X68483 878960 Cyanophora paradoxa Glaucocystis nostochinearum X70803 716815 Glaucocystis nostochinearum Apusomonas proboscidea L37037 918390 Apusomonas proboscidea Mesostigma viride AJ250109 976425 Mesostigma viride Dunaliella salina M84320 347109 Dunaliella salina Chlamydomonas reinhardtii M32703 33153 Chlamydomonas reinhardtii Ulva rigida AJ005414 1036621 Ulva rigida Picocystis salinarum AF125167 1044820 Picocystis salinarum Equisetum robustum X78890 308005 Equisetum robustum Cyanidioschyzon meloae AB158483 85503 Cyanidioschyzon merolae Oryza sativa X00755 709894 Oryza sativa Pisum sativum U43011 359905 Pisum sativum Helianthus annuus AF107577 515712 Helianthus annuus Compsopogon coeruleus AF087128 339611 Compsopogon caeruleus Cyanidioschyzon merolae AB158485 85503 Cyanidioschyzon merolae Flintiella sanguinaria AF168621 668453 Flintiella sanguinaria Glaucosphaera vacuolata AB045583 142559 Glaucosphaera vacuolata Palmaria palmata X53500 725574 Palmaria palmata Coccolithus pelagicus AJ246261 1073871 Coccolithus pelagicus Prymnesium parvum AJ246269 937580 Prymnesium parvum Guillardia theta AF289037 5247740 Guillardia theta Pavlova gyrans U40922 536545 Pavlova gyrans Loxodes striatus U24248 890496 Loxodes striatus Blepharisma americanum M97909 703496 Blepharisma americanum Oxytricha nova M14601 390566 Sterkiella nova Oxytricha saltans AF370028 920832 Oxytricha saltans Paramecium tetraurelia X03772 568130 Paramecium tetraurelia Tetrahymena thermophila X56165 180195 Tetrahymena thermophila Prorodon teres X71140 1010083 Prorodon teres Theileria cervi AF086804 418319 Theileria cervi Toxoplasma gondii L24381 252145 Toxoplasma gondii Goniomonas truncata DQ980470 914450 Goniomonas truncata Perkinsus marinus AF126013 438694 Perkinsus marinus Heterocapsa triquetra AF022198 882515 Heterocapsa triquetra Prorocentrum concavum Y16237 1065895 Prorocentrum concavum Crypthecodinium cohnii FJ821501 621393 Crypthecodinium cohnii Papiliocellulus elegans X85388 28086 Papiliocellulus elegans Phaeodactylum tricornutum AJ269501 1095879 Phaeodactylum tricornutum Stephanopyxis nipponica M87330 642788 Stephanopyxis nipponica Ectocarpus siliculosus L43062 878345 Ectocarpus siliculosus Pelagomonas calceolata U14389 217467 Pelagomonas calceolata Apodachlya brachynema AJ238663 395251 Apodachlya brachynema Goniomonas sp. AY752989 952118 Goniomonas sp. ATCC 50108 Hyphochytrium catenoides X80344 435099 Hyphochytrium catenoides Cafeteria roenbergensis L27633 215706 Cafeteria roenbergensis Labyrinthuloides minuta L27634 164912 Labyrinthuloides minuta Telonema subtilis AJ564771 4738975 Telonema subtile Pterocystis sp. AY268043 631191 Pterocystis sp. Devon Chlamydaster sterni AF534709 203541 Chlamydaster sterni Raphidiophrys ambigua AF534708 607131 Raphidiophrys ambigua Massisteria marina AF411286 481578 Massisteria marina Gymnophrys cometa AJ514866 4019226 Gymnophrys cometa Dimorpha sp. EF455769 Crithidia fasciculata Y00055 192253 Crithidia fasciculata Bigelowiella natans AF054832 5260606 Bigelowiella natans Clathrulina elegans AY305009 972895 Clathrulina elegans Hedriocystis reticulata AY305010 446837 Hedriocystis reticulata Thaumatomonas seravini EF455776 592137 Thaumatomonas seravini Euglypha rotunda X77692 247675 Euglypha rotunda Paulinella chromatophora X81811 247676 Paulinella chromatophora Heteromita globosa AY496043 554899 Heteromita globosa Ebria tripatita DQ303923 667702 Ebria tripartita Lecythium sp. AJ514867 4019288 Lecythium sp. Protaspis grandis DQ303924 667704 Protaspis grandis Trypanosoma brucei X05682 494245 Trypanosoma brucei Cercomonas longicauda AF101052 513901 Cercomonas longicauda Gromia ovifformis AJ457815 962362 Gromia oviformis Filoreta tenera EF514503 4021632 Corallomyxa tenera Phagomyxa odontellae AF310904 423152 Phagomyxa odontellae Sorosphaera veronicae AF310900 423143 Sorosphaera veronicae Spongospora subterranea AY604173 41886 Spongospora subterranea Plasmodiophora brassicae U18981 934409 Plasmodiophora brassicae Reticulomyxa filosa AJ132367 434296 Reticulomyxa filosa Allogromia sp. X86093 440174 Allogromia sp. 12957 Cycloclypeus carpenteri AJ879133 941350 Cycloclypeus carpenteri Trypanosoma cruzi L22334 779555 Trypanosoma cruzi Ammonia beccarii X86094 681846 Ammonia beccarii Collozoum amoeboides CL09 AB613239 409680 Collozoum amoeboides Sphaerozoum punctatum CL17 AB613248 1093165 Sphaerozoum punctatum Pterocorys zancleus AB430759 137452 Pterocorys zancleus Larcopyle buetschlii KT080 AB613231 181612 Larcopyle butschlii Dictyocoryne truncatum AB430757 925438 Dictyocoryne truncatum Sticholonche sp. AY268045 543281 Sticholonche sp. JJP-2003 Dorataspid sp. AM178586 568584 Dorataspid sp. 915 Caenorhabditis elegans NM_074225 395048 Caenorhabditis elegans (species in subfamily Peloderinae) Dendronephthya klunzingeri Y17848 1011824 Dendronephthya klunzingeri Euglena gracilis X53361 1073327 Euglena gracilis Trichoplax adhaerens XM_002113141 570365 Trichoplax adhaerens Bombyx mori GU324473 440274 Bombyx mori Drosophila melanogaster X03810 505714 Drosophila melanogaster Homo sapiens A AK291607 770315 Homo sapiens Mus musculus A AK147641 182316 Mus musculus albula Mus musculus G AK135366 102 Mus musculus gentilulus Homo sapiens G AK297367 770315 Homo sapiens Monosiga brevicollis AY226081 281703 Monosiga brevicollis Proterospongia sp. AY226082 715814 Proterospongia Corallochytrium limacisporum AY236712 574695 Corallochytrium limacisporum Mus musculus J00623 542509 Mus musculus Chlamydaster sterni EF681909 203541 Chlamydaster sterni Cryptococcus neoformans var. grubii AF384808 61545 Cryptococcus neoformans var. grubii Candida albicans X81025 1034966 Candida albicans Aspergillus niger Y11528 300201 Aspergillus niger Andalucia incarcerata EU334886 813154 Andalucia incarcerata Andalucia godoyi EU334880 83127 Andalucia godoyi Cyanidioschyzon merolae AB095186 85503 Cyanidioschyzon merolae Carpediemonas membranifera DQ295219 260292 Carpediemonas membranifera Retortamonas sp. EF551172 583966 Retortamonas sp. ATCC 50375 Spironucleus barkhanus DQ295 614625 Spironucleus barkhanus Hexamita inflata AY462239 202782 Hexamita inflata Pterocystis tropica AY752993 631190 Pterocystis tropica Euglena gracilis AY288511 1073327 Euglena gracilis Rhynchopus sp. AY122622 1084516 Rhynchopus sp. ATCC 50226 Diplonema papillatum AY122623 178087 Diplonema papillatum Trypanoplasma borreli AY122628 222235 Trypanoplasma borreli Bodo saliens AY122627 825224 Neobodo saliens Trimastix marina DQ295223 4739019 Trimastix marina Trimastix pyriformis EU327684 4739021 Trimastix pyriformis Spumella uniguttata AY391254 205221 Spumella uniguttata Mallomonas rasilis AY729857 422442 Mallomonas rasilis Ectocarpus siliculosus FN647986 878345 Ectocarpus siliculosus Apusomonas proboscidea DQ980467 918390 Apusomonas proboscidea Phaeodactylum tricornutum AY729859 1095879 Phaeodactylum tricornutum Heterosigma akashiwo AY729854 725551 Heterosigma akashiwo Plectospira myriandra AY729861 908524 Plectospira myriandra Thraustotheca clavata AY729864 965750 Thraustotheca clavata Apodachlya brachynema AY729852 395251 Apodachlya brachynema Brevilegnia macrospora AY729853 1048359 Brevilegnia macrospora Pythium graminicola AY729862 223258 Pythium graminicola Apusomonas proboscidea DQ980460 918390 Apusomonas proboscidea Amastigomonas marina AY236711 952117 Amastigomonas marina Chlamydomonas reinhardtii XM_001695212 33153 Chlamydomonas reinhardtii Glaucocystis nostochinearum AY216931 716815 Glaucocystis nostochinearum Arabidopsis thaliana 1 AY128296 309263 Arabidopsis thaliana Oryza sativa 1 AK061896 709894 Oryza sativa Zea mays NM_001141944 605194 Zea mays Triticum aestivum DQ665784 31926 Triticum aestivum Hordeum vulgare AY325266 657948 Hordeum vulgare Lycopersicon esculentum AY368907 378964 Solanum lycopersicum (species in subgenus Lycopersicon) Arabidopsis thaliana G AY128805 309263 Arabidopsis thaliana Oryza sativa G CT830927 709894 Oryza sativa Mesostigma viride DQ980450 976425 Mesostigma viride Cyanophora paradoxa DQ980445 878960 Cyanophora paradoxa Cyanophora paradoxa AY216932 878960 Cyanophora paradoxa Glaucocystis nostochinearum AB300198 716815 Glaucocystis nostochinearum Telonema subtile AM237830 4738975 Telonema subtile Goniomonas sp. AY236713 952118 Goniomonas sp. ATCC 50108 Goniomonas truncata DQ980448 914450 Goniomonas truncata Guillardia theta AY729863 5247740 Guillardia theta Raphidiophrys contractilis AB288082 587061 Raphidiophrys contractilis Isochrysis galbana AY729856 955647 Isochrysis galbana Prymnesium parvum AY729865 937580 Prymnesium parvum Pavlova lutheri AY729858 151008 Pavlova lutheri Trichomonas vaginalis XM_001317510 745845 Trichomonas vaginalis Chlamydomonas reinhardtii EU410621 33153 Chlamydomonas reinhardtii Malawimonas jakobiformis DQ295220 935423 Malawimonas jakobiformis Cryptosporidium parvum XM_626924 775251 Cryptosporidium parvum Theileria parva M57386 302422 Theileria parva Babesia bovis AF136649 826545 Babesia bovis Toxoplasma gondii AY344115 252145 Toxoplasma gondii Monocystis agilis AY391262 91094 Monocystis agilis Perkinsus marinus AY391259 438694 Perkinsus marinus Heterocapsa triquetra AY729855 882515 Heterocapsa triquetra Oxytricha sp. DQ062088 854511 Oxytricha sp. Halteria grandinella AY391253 129122 Halteria grandinella Chlorella ellipsoidea D17810 339008 Pseudochlorella pringsheimii Paramecium tetraurelia XM_001424132 568130 Paramecium tetraurelia Tetrahymena thermophila XM_001009780 180195 Tetrahymena thermophila Tetrahymena bergeri AY391257 11752 Tetrahymena bergeri Tetrahymena pyriformis AF287229 754194 Tetrahymena pyriformis Dictyostelium discoideum XM_637298 160850 Dictyostelium discoideum Naegleria gruberi XM_002682573 641873 Naegleria gruberi Gymnophrys sp. GQ377653 248515 Cercomonas sp. C-83 Bigelowiella natans XM_001712767 5260606 Bigelowiella natans Thaumatomonas sp. AY236717 554905 Thaumatomonas sp. Reticulomyxa filosa EST 434296 Reticulomyxa filosa Hylcmium splendens AJ271024 734788 Hylocomium splendens Larcopyle buetschlii KT080 CL07 AB613224 181612 Larcopyle butschlii Pellia neesiana AJ271021 836467 Pellia neesiana Bucegia romanica AJ271022 683246 Bucegia romanica Drosophila melanogaster M21017 505714 Drosophila melanogaster Andreaea nivalis AJ271023 403417 Andreaea nivalis Clathrulina elegans 972895 Clathrulina elegans Hedriocystis reticulata 446837 Hedriocystis reticulata Dimorpha sp. Gymnophrys cometa 4019226 Gymnophrys cometa Cercomonas longicauda 513901 Cercomonas longicauda Heteromita globosa 554899 Heteromita globosa Paulinella chromatophora 247676 Paulinella chromatophora Euglypha rotunda 247675 Euglypha rotunda Paracercomonas marina 620926 Paracercomonas marina Funaria hygrometrica X80212 765280 Funaria hygrometrica Protaspis grandis 667704 Protaspis grandis Lecythium sp. 4019288 Lecythium sp. Massisteria marina 481578 Massisteria marina Partenskyella glossopodia 1003448 Partenskyella glossopodia Phagomyxa odontellae 423152 Phagomyxa odontellae Sorosphaera veronicae 423143 Sorosphaera veronicae Spongospora subterranea 41886 Spongospora subterranea Mesostigma viride DQ980472 976425 Mesostigma viride Filoreta tenera 4021632 Corallomyxa tenera Allogromia sp. 440174 Allogromia sp. 12957 Cycloclypeus carpenteri 941350 Cycloclypeus carpenteri Acantharia composite 45752 Acantharia (class in Rhizaria) Oryza sativa M11585 709894 Oryza sativa Sticholonche sp. composite 543279 Sticholonchidae Dictyocoryne sp. composite 808203 Dictyocaryum Spongodiscidae sp. 350021 Spongodiscidae Pterocorys sp. composite 496576 Pterocarya Polycystine-like environmental clone 566633 Polycystinea (class silva:AB179732/#5 in Rhizaria) Uncultured marine Polycystinea clone 566633 Polycystinea (class silva:AB179732/#5 in Rhizaria) Telonema subtile FJ973372 4738975 Telonema subtile Plasmodiophora brassicae AB526849 934409 Plasmodiophora brassicae Thaumatomonas sp. DQ980477 554905 Thaumatomonas sp. Paracercomonas marina DQ386164 620926 Paracercomonas marina Partenskyella glossopodia AB453011 1003448 Partenskyella glossopodia Bigelowiella natans AF289036 5260606 Bigelowiella natans Caenorhabditis elegans X03680 395048 Caenorhabditis elegans (species in subfamily Peloderinae) Gromia oviformis X79511 962362 Gromia oviformis Rosalina vilardeboana Z30148 781937 Rosalina vilardeboana Trochamnina sp. Z30147 680242 Trochammina sp. Glabratella mediterranensis Z30149 259252 Glabratella mediterranensis Ammonia tepida Z30146 259251 Ammonia tepida Rotaliella elatiana X78521 962363 Rotaliella elatiana Uncultured marine Acantharea clone FJ032650 45752 Acantharia (class in Rhizaria) Sticholonchidae-like environmental Sticholonche-like environmental clone DQ386168 Dictyocoryne truncatum AB430758 925438 Dictyocoryne truncatum Spongodiscidae sp. AB430760 350021 Spongodiscidae Dugesia tigrina U78718 101228 Girardia tigrina Larcopyle buetschlii KT080 CL03 AB613230 181612 Larcopyle butschlii Sphaerozoum punctatum CL21 AB613247 1093165 Sphaerozoum punctatum Collozoum amoeboides CL01 AB613238 409680 Collozoum amoeboides Uncultured marine Polycystinea clone FJ032683 Pterocorys cf. zancleusAB430759 275556 Pterocorys cf. zancleus I Polycystine-like environmental clone DQ386169 Homo sapiens AK316361 770315 Homo sapiens Drosophia melanogaster NM_078497 505714 Drosophila melanogaster Mus musculus M12866 542509 Mus musculus Caenorhabditis elegans NM_073416 395048 Caenorhabditis elegans (species in subfamily Peloderinae) Monosiga brevicollis AY026374 281703 Monosiga brevicollis Monosiga brevicollis AY026072 281703 Monosiga brevicollis Apusomonas proboscidea DQ980437 918390 Apusomonas proboscidea Physarum polycephalum M59234 422679 Physarum polycephalum Dictyostelium discoideum U25660 160850 Dictyostelium discoideum Telonema subtilis FN392440 4738975 Telonema subtile Prymnesium parvum AY729848 937580 Prymnesium parvum Pavlova gyrans EF455731 536545 Pavlova gyrans Isochrysis galbana AY729843 955647 Isochrysis galbana Guillardia theta AB544304 5247740 Guillardia theta Goniomonas truncata AF284837 914450 Goniomonas truncata Maximum likelihood node129 Source data for tree 'tree1' node1 false true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true Maximum likelihood node269 Source data for tree 'tree2' node315 false true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true false true true true true true true true true true true true true true true true false true true true true true true false true false true true true false true true false true true true true true true true true true true true false true Maximum likelihood node373 Source data for tree 'tree3' node345 false true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true false true true false true false true false true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true Maximum likelihood node640 Source data for tree 'tree4' node500 false true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true false true false true false true false Maximum likelihood node717 Source data for tree 'tree5' node647 false true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true Maximum likelihood node782 Source data for tree 'tree6' node722 false true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true Maximum likelihood node975 Source data for tree 'tree7' node783 false true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true Maximum likelihood Source data for tree 'tree8' node996 false true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true false true false true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true false true true Maximum likelihood Source data for tree 'tree9' node1161 false true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true false