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2.7.3
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CPython
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tree1
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lzogbaum
6929
Rhizaria
false
ot_97
Yoshiyuki Ishitani, Sohta A. Ishikawa, Yuji Inagaki, Masashi Tsuchiya, Kozo Takahashi, Kiyotaka Takishita, 2011, 'Multigene phylogenetic analyses including diverse radiolarian species support the “Retaria” hypothesis — The sister relationship of Radiolaria and Foraminifera', Marine Micropaleontology, vol. 81, no. 1-2, pp. 32-42
2011
Oikopleura sp. AF158726
846403
Oikopleura
Blastocladiella emersonii X90410
263372
Blastocladiella emersonii
Cyanidioschyzon merolae D32140
85503
Cyanidioschyzon merolae
Cyanophora paradoxa U90325
878960
Cyanophora paradoxa
Glaucocystis nostochinearum DQ980420
716815
Glaucocystis nostochinearum
Volvox carteri f. nagariensis XM_002955490
187583
Volvox carteri f. nagariensis
Chlamydomonas reinhardtii XM_001699016
33153
Chlamydomonas reinhardtii
Mesostigma viride AF061020
976425
Mesostigma viride
Oryza sativa X15865
709894
Oryza sativa
Arabidopsis thaliana AY089032
309263
Arabidopsis thaliana
Pisum sativum X67666
359905
Pisum sativum
Raphidiophrys ambigua AY283746
607131
Raphidiophrys ambigua
Entomophaga aulicae U35394
931417
Entomophaga aulicae
Euglena gracilis AF057161
1073327
Euglena gracilis
Leishmania infantum GQ246779
243214
Leishmania infantum
Trypanosoma cruzi AY785629
779555
Trypanosoma cruzi
Trypanosoma brucei M20310
494245
Trypanosoma brucei
Trichomonas vaginalis EU076584
745845
Trichomonas vaginalis
Paramecium tetraurelia AF043608
568130
Paramecium tetraurelia
Tetrahymena thermophila M13939
180195
Tetrahymena thermophila
Naegleria gruberi AF101729
641873
Naegleria gruberi
Heterocapsa triquetra EF640328
882515
Heterocapsa triquetra
Oxyrrhis marina AF482402
746955
Oxyrrhis marina
Cryptococcus neoformans L14067
634633
Cryptococcus neoformans
Perkinsus marinus AY436365
438694
Perkinsus marinus
Plasmodium falciparum AF177282
201128
Plasmodium falciparum
Toxoplasma gondii U10429
252145
Toxoplasma gondii
Cryptosporidium parvum XM_001388245
775251
Cryptosporidium parvum
Ectocarpus siliculosus FN648380
878345
Ectocarpus siliculosus
Heterosigma akashiwo AY729842
725551
Heterosigma akashiwo
Apodachlya brachynema AY729840
395251
Apodachlya brachynema
Phytophthora palmivora AY729846
405030
Phytophthora palmivora
Thalassiosira pseudonana XM_002294881
753596
Thalassiosira pseudonana
Phaeodactylum tricornutum EF553461
1095879
Phaeodactylum tricornutum
Pneumocystis carinii M86760
352919
Pneumocystis carinii
Cryptococcus neoformans var. neoformans XM_566845
48333
Cryptococcus neoformans var. neoformans
Saccharomyces cerevisiae FN985054
908549
Saccharomyces cerevisiae
Candida albicans AJ389057
1034966
Candida albicans
Schizosaccharomyces pombe NM001021513
990004
Schizosaccharomyces pombe
Pneumocystis carinii D49831
352919
Pneumocystis carinii
Dimorpha
Dimorpha sp. EF455772
Lecythium sp. AY283756
4019288
Lecythium sp.
Lotharella amoeboformis AF363531
74170
Lotharella amoeboformis
Lotharella globosa AY452196
717246
Lotharella globosa
Lotharella amoeboformis AF363532
74170
Lotharella amoeboformis
Arxula adeninivorans Z50840
350064
Blastobotrys adeninivorans
Bigelowiella natans EF455788
5260606
Bigelowiella natans
Thaumatomonas seravini EF455755
592137
Thaumatomonas seravini
Cercomonas sp. AF363536
554897
Cercomonas
Thaumatomonas sp. DQ980435
554905
Thaumatomonas sp.
Hedriocystis reticulata AY283755
446837
Hedriocystis reticulata
Clathrulina elegans AY283754
972895
Clathrulina elegans
Reticulomyxa filosa 2 AJ132371
Ammonia sp. 2 AJ132373
1089030
Ammonia sp. 2306
Allogromia sp. 2 AY763940
440174
Allogromia sp. 12957
Sphaerozoum punctatum CL14 AB613246
1093165
Sphaerozoum punctatum
Candida albicans L07796
1034966
Candida albicans
Collozoum amoeboides CL02 AB613237
409680
Collozoum amoeboides
Collozoum inerme AY507123
614582
Collozoum inerme
Collozoum inerme AY507124
614582
Collozoum inerme
Thalassicolla pellucida AY507125
614581
Thalassicolla pellucida
Urosporidium crescens AY450422
898300
Urosporidium crescens
Spongospora subterranea AY452193
41886
Spongospora subterranea
Sorosphaera veronicae AY452190
423143
Sorosphaera veronicae
Plasmodiophora brassicae AY452179
934409
Plasmodiophora brassicae
Haplosporidium costale AY450407
90740
Haplosporidium costale
Minchinia teredinis AY450420
655792
Minchinia teredinis
Mucor racemosus AJ271061
363298
Mucor racemosus
Minchinia tapetis AY450417
201919
Minchinia tapetis
Haplosporidium louisiana AY450410
898305
Haplosporidium louisiana
Minchinia teredinis AY450421
655792
Minchinia teredinis
Haplosporidium nelsoni AY450412
747229
Haplosporidium nelsoni
Minchinia teredinis AY450419
655792
Minchinia teredinis
Haplosporidium louisiana AY450411
898305
Haplosporidium louisiana
Gromia oviformis 2 AY571669
962362
Gromia oviformis
Gromia oviformis 1 AY305013
962362
Gromia oviformis
Filoreta tenera EF514505
4021632
Corallomyxa tenera
Allogromia sp. 1 AJ132370
440174
Allogromia sp. 12957
Rhizomucor miehei AF198253
735964
Rhizomucor miehei
Planoglabratella opercularis AB219461
311748
Planoglabratella opercularis
Reticulomyxa filosa 1 AJ132374
434296
Reticulomyxa filosa
Ammonia sp. 1 AJ132372
5219149
Ammonia sp. 1 RS-2013
Larcopyle buetschlii KT80 CL02 AB613229
181612
Larcopyle butschlii
Caenorhabditis elegans NM_065262
395048
Caenorhabditis elegans (species in subfamily Peloderinae)
Mus musculus BC085256
542509
Mus musculus
Homo sapiens K00558
770315
Homo sapiens
Drosophila melanogaster BT012506
505714
Drosophila melanogaster
Monosiga brevicollis CH991544
281703
Monosiga brevicollis
Candida albicans U38534
1034966
Candida albicans
Hyphochytrium catenoides X80346
435099
Hyphochytrium catenoides
Pneumocystis carinii M95294
352919
Pneumocystis carinii
Cryptococcus neoformans var. neoformans XM_568869
48333
Cryptococcus neoformans var. neoformans
Spizellomyces punctatus AF162085
708156
Spizellomyces punctatus
Apusomonas proboscidea DQ980530
918390
Apusomonas proboscidea
Monocercomonas sp. U66903
171544
Monocercomonas sp.
Trichomitus batrachorum U66904
147994
Trichomitus batrachorum
Andalucia incarcerata AF267179
813154
Andalucia incarcerata
Larcopyle buetschlii KT080 CL06 AB613227
181612
Larcopyle butschlii
Sphaerozoum punctatum CL18 AB613245
1093165
Sphaerozoum punctatum
Collozoum amoeboides CL13 AB613236
409680
Collozoum amoeboides
Apodachlya brachynema AF235936
395251
Apodachlya brachynema
Carpediemonas membranifera AY117421
260292
Carpediemonas membranifera
Giardia lamblia XM_001705667
694358
Giardia intestinalis
Spironucleus barkhanus U29440
614625
Spironucleus barkhanus
Spironucleus muris U37079
247669
Spironucleus muris
Hexamita inflata U37080
202782
Hexamita inflata
Dictyostelium discoideum L13999
160850
Dictyostelium discoideum
Arachnula sp. EU273437
1082076
Arachnula sp. CL12
Cholamonas cyrtodiopsidis FJ973413
879684
Cholamonas cyrtodiopsidis
Phaeodactylum tricornutum XM_002180620
1095879
Phaeodactylum tricornutum
Ectocarpus siliculosus FN648741
878345
Ectocarpus siliculosus
Styela plicata AF158724
750985
Styela plicata
Phytophthora megasperma X75632
775722
Phytophthora megasperma
Jakoba libera AF267180
837682
Jakoba libera
Thaumatomonas seravini EF455794
592137
Thaumatomonas seravini
Capsellina sp. GQ377659
505597
Capsellina sp. ATCC 50039
Bodomorpha minima FJ973412
644464
Bodomorpha minima
Cercomonas sp. AF043927
1081308
Cercomonas sp. ATCC 50316
Bigelowiella natans AY542971
5260606
Bigelowiella natans
Chlamydomonas reinhardtii AY182002
33153
Chlamydomonas reinhardtii
Volvox carteri f nagariensis XM_002950961
187583
Volvox carteri f. nagariensis
Cyanophora paradoxa DQ113470
878960
Cyanophora paradoxa
Euglena gracilis Z22877
1073327
Euglena gracilis
Skeletonema pseudocostatum Y11512
459898
Skeletonema pseudocostatum
Leishmania donovani U09612
766598
Leishmania donovani
Trypanosoma brucei XM_001218939
494245
Trypanosoma brucei
Trypanosoma cruzi M96849
779555
Trypanosoma cruzi
Acrasis rosea U66905
765113
Acrasis rosea
Naegleria gruberi XM_002680043
641873
Naegleria gruberi
Reclinomonas americana AF267182
429200
Reclinomonas americana
Ammonia tepida AY818729
259251
Ammonia tepida
Miliammina fusca AY818730
927205
Miliammina fusca
Reticulomyxa filosa X96475
434296
Reticulomyxa filosa
Rhabdammina cornuta AY818731
155294
Rhabdammina cornuta
Phaeodactylum tricornutum EF553458
1095879
Phaeodactylum tricornutum
Larcopyle buetschlii KT080 CL08 AB613228
181612
Larcopyle butschlii
Collozoum amoeboides CL08 AB613235
409680
Collozoum amoeboides
Sphaerozoum punctatum CL20 AB613244
1093165
Sphaerozoum punctatum
Glaucocystis nostochinearum DQ980492
716815
Glaucocystis nostochinearum
Mesostigma viride DQ113478
976425
Mesostigma viride
Arabidopsis thaliana AY143895
309263
Arabidopsis thaliana
Pisum sativum U12589
359905
Pisum sativum
Oryza sativa AF182523
709894
Oryza sativa
Paramecium tetraurelia X99490
568130
Paramecium tetraurelia
Epistylis sp. FJ883554
4922643
Epistylis sp. 1 JG-2011
Tribonema aequale Y07978
898586
Tribonema aequale
Tetrahymena thermophila M86723
180195
Tetrahymena thermophila
Tetrahymena pyriformis X12767
754194
Tetrahymena pyriformis
Palpitomonas bilix AB508341
4739017
Palpitomonas bilix
Oxytricha granulifera Z11763
650724
Oxytricha granulifera
Stylonychia lemnae X12365
650734
Stylonychia lemnae (species ncbi:5949 in subclass Hypotrichia)
Toxoplasma gondii XM_002364766
252145
Toxoplasma gondii
Plasmodium falciparum XM_001351490
201128
Plasmodium falciparum
Pavlova gyrans EF455740
536545
Pavlova gyrans
Prymnesium parvum AY729837
937580
Prymnesium parvum
Perkinsus marinus AF482399
438694
Perkinsus marinus
Ectocarpus siliculosus EF990201
878345
Ectocarpus siliculosus
Heterocapsa triquetra AF482412
882515
Heterocapsa triquetra
Guillardia theta AF050090
5247740
Guillardia theta
Goniomonas truncata DQ980534
914450
Goniomonas truncata
Gymnophrys sp. FJ973414
248515
Cercomonas sp. C-83
Massisteria marina GQ377649
481578
Massisteria marina
Telonema subtile AM237835
4738975
Telonema subtile
Apodachlya brachynema AY729828
395251
Apodachlya brachynema
Cyanidioschyzon merolae AB095180
85503
Cyanidioschyzon merolae
Raphidiophrys contractilis AB196985
587061
Raphidiophrys contractilis
Filoreta tenera EF514502
5247621
Filoreta
Nannochloropsis salina Y07974
694371
Nannochloropsis salina
Planoglabratella opercularis AB219462
311748
Planoglabratella opercularis
Reticulomyxa filosa Y16244
434296
Reticulomyxa filosa
Drosophila melanogaster NM079071
505714
Drosophila melanogaster
Homo sapiens BC006570
770315
Homo sapiens
Mus musculus M28730
542509
Mus musculus
Trichoplax adhaerens FJ387017
570365
Trichoplax adhaerens
Cryptococcus neoformans var. neoformans XM_771811
48333
Cryptococcus neoformans var. neoformans
Candida albicans M19398
1034966
Candida albicans
Pneumocystis carinii X62113
352919
Pneumocystis carinii
Oxytricha sp. AF508764
854511
Oxytricha sp.
Spizellomyces punctatus AF162076
708156
Spizellomyces punctatus
Trichomonas vaginalis L05468
745845
Trichomonas vaginalis
Carpediemonas membranifera AY117422
260292
Carpediemonas membranifera
Giardia lamblia X06748
694358
Giardia intestinalis
Spironucleus barkhanus U29441
614625
Spironucleus barkhanus
Malawimonas jakobiformis AF267185
935423
Malawimonas jakobiformis
Apusomonas proboscidea DQ980518
918390
Apusomonas proboscidea
Dictyostelium discoideum AF030823
160850
Dictyostelium discoideum
Andalucia incarcerata AF267183
813154
Andalucia incarcerata
Euglena gracilis X15797
1073327
Euglena gracilis
Spathidium amphoriforme AF223570
589937
Spathidium amphoriforme
Naegleria gruberi Z13961
641873
Naegleria gruberi
Jakoba libera AF267184
837682
Jakoba libera
Pavlova gyrans FJ973415
536545
Pavlova gyrans
Trypanosoma brucei FN554964
494245
Trypanosoma brucei
Leishmania mexicana AF345947
766611
Leishmania mexicana
Guillardia theta AF050092
5247740
Guillardia theta
Goniomonas truncata DQ980516
914450
Goniomonas truncata
Telonema antarcticum AM237831
4738976
Telonema antarcticum
Chlamydomonas reinhardtii K03281
33153
Chlamydomonas reinhardtii
Euplotes aediculatus AF223571
650729
Euplotes aediculatus
Mesostigma viride DQ113480
976425
Mesostigma viride
Oryza sativa L33263
709894
Oryza sativa
Pisum sativum X54844
359905
Pisum sativum
Arabidiopsis thaliana AK117262
309263
Arabidopsis thaliana
Glaucocystis nostochinearum DQ980521
716815
Glaucocystis nostochinearum
Bodomorpha minima GQ377660
644464
Bodomorpha minima
Heteromita globosa GQ37767
554899
Heteromita globosa
Cercomonas sp. AF119173
1081308
Cercomonas sp. ATCC 50316
Gymnophrys sp. GQ377646
248515
Cercomonas sp. C-83
Bigelowiella natans AF043935
5260606
Bigelowiella natans
Tetrahymena thermophila X54512
180195
Tetrahymena thermophila
Massisteria marina GQ377980
481578
Massisteria marina
Thaumatomonas sp. DQ980529
554905
Thaumatomonas sp.
Cholamonas cyrtodiopsidis FJ973424
879684
Cholamonas cyrtodiopsidis
Cyanophora paradoxa AF092952
878960
Cyanophora paradoxa
Pythium ultimum AF218256
504918
Pythium ultimum
Apodachlya brachynema AY729815
395251
Apodachlya brachynema
Achlya klebsiana J05597
555787
Achlya klebsiana
Ectocarpus siliculosus FN648390
878345
Ectocarpus siliculosus
Phaeodactylum tricornutum AY729821
1095879
Phaeodactylum tricornutum
Heterocapsa triquetra AF482414
882515
Heterocapsa triquetra
Herdmania momus X53538
1023784
Herdmania momus
Paramecium tetraurelia EU828456
568130
Paramecium tetraurelia
Tetrahymena thermophila XM_001023006
180195
Tetrahymena thermophila
Plasmodium falciparum M28398
201128
Plasmodium falciparum
Toxoplasma gondii M20025
252145
Toxoplasma gondii
Perkinsus marinus AF482401
438694
Perkinsus marinus
Oxytricha granulifera AF510205
650724
Oxytricha granulifera
Plasmodiophora brassicae AM411665
934409
Plasmodiophora brassicae
Collozoum amoeboides CL20 AB613234
409680
Collozoum amoeboides
Sphaerozoum punctatum CL03 AB613243
1093165
Sphaerozoum punctatum
Larcopyle buetschlii KT080 CL06 AB613225
181612
Larcopyle butschlii
Filoreta tenera EF514506
4021632
Corallomyxa tenera
Theileria parva AF013419
302422
Theileria parva
Cyanidioschyzon merolae AB095181
85503
Cyanidioschyzon merolae
Raphidiophrys contractilis AB196986
587061
Raphidiophrys contractilis
Gromia sp. antarctica HM244877
800020
Gromia sp. Antarctica
Allogromia sp. AY818725
440174
Allogromia sp. 12957
Allogromia katicollaris Y16168
640787
Allogromia laticollaris
Crithionina delacai AY818714
425259
Crithionina delacai
Planoglabratella opercularis AB219463
311748
Planoglabratella opercularis
Pyrgo peruviana AY818716
326514
Pyrgo peruviana
Miliammina fusca AY818724
927205
Miliammina fusca
Cornuspira antarctica AY818721
493280
Cornuspira antarctica
Eimeria tenella AF026388
775246
Eimeria tenella
Rhabdammina cornuta AY818723
155294
Rhabdammina cornuta
Reticulomyxa filosa X96478
434296
Reticulomyxa filosa
Sphaerozoum punctatum CL18 AB613242
1093165
Sphaerozoum punctatum
Sphaerozoum punctatum CL021 AB613241
1093165
Sphaerozoum punctatum
Collozoum amoeboides CL08 AB613233
409680
Collozoum amoeboides
Larcopyle buetschlii KT080 CL05 AB613226
181612
Larcopyle butschlii
Drosophila melanogaster
505714
Drosophila melanogaster
Mus musculus
542509
Mus musculus
Monosiga brevicollis
281703
Monosiga brevicollis
Cryptococcus neoformans
634633
Cryptococcus neoformans
Toxoplasma gondii X75453
252145
Toxoplasma gondii
Pneumocystis sp. composite
1061721
Pneumocystis sp. ZL2005b
Candida albicans
1034966
Candida albicans
Apusomonas proboscidea
918390
Apusomonas proboscidea
Guillardia theta
5247740
Guillardia theta
Goniomonas truncata
914450
Goniomonas truncata
Cyanophora paradoxa
878960
Cyanophora paradoxa
Glaucocystis nostochinearum
716815
Glaucocystis nostochinearum
Cyanidioschyzon meloae
85503
Cyanidioschyzon merolae
Chlamydomonas reinhardtii
33153
Chlamydomonas reinhardtii
Oryza sativa
709894
Oryza sativa
Sarcocystis tenella AF076899
252139
Sarcocystis tenella
Mesostigma viride
976425
Mesostigma viride
Pavlova gyrans
536545
Pavlova gyrans
Prymnesium parvum
937580
Prymnesium parvum
Paramecium tetraurelia
568130
Paramecium tetraurelia
Tetrahymena thermophila
180195
Tetrahymena thermophila
Oxytricha sp. composite
854511
Oxytricha sp.
Toxoplasma gondii
252145
Toxoplasma gondii
Heterocapsa triquetra
882515
Heterocapsa triquetra
Perkinsus sp. composite
674170
Perkinsus sp. 'isolate G117'
Trypanosoma brucei
494245
Trypanosoma brucei
Heterocapsa triquetra EF613355
882515
Heterocapsa triquetra
Trypanosoma cruzi
779555
Trypanosoma cruzi
Euglena gracilis
1073327
Euglena gracilis
Apodachlya brachynema
395251
Apodachlya brachynema
Phaeodactylum tricornutum
1095879
Phaeodactylum tricornutum
Ectocarpus siliculosus
878345
Ectocarpus siliculosus
Thaumatomonas sp. composite
554905
Thaumatomonas sp.
Bigelowiella natans
5260606
Bigelowiella natans
Plasmodiophora brassicae
934409
Plasmodiophora brassicae
Gromia oviformis
962362
Gromia oviformis
Ammonia sp. composite
158522
Ammonia
Prorocentrum micans M14649
797786
Prorocentrum micans
Foraminifera composite
936399
Foraminifera
Larcopyle buetschlii KT080
181612
Larcopyle butschlii
Collozoum amoeboides
409680
Collozoum amoeboides
Sphaerozoum punctatum
1093165
Sphaerozoum punctatum
Drosophila melanogaste
505714
Drosophila melanogaster
Perkinsus chesapeaki AY305327
662165
Perkinsus chesapeaki
Pavlova sp. composite
415316
Pavlova sp. AC19
Pavlova gyrans FJ973368
536545
Pavlova gyrans
Trypanosoma sp. composite
800532
Trypanosoma sp. Fly9
Leucosolenia sp. AF100945
104610
Leucosolenia sp. AR-2003
Trichoplax adhaerens L10828
570365
Trichoplax adhaerens
Mytilus edulis L24489
499751
Mytilus edulis
Salmo trutta X98839
688332
Salmo trutta
Mus musculus X00686
542509
Mus musculus
Gallus gallus AF173612
153563
Gallus gallus
Diaphanoeca grandis L10824
726085
Diaphanoeca grandis
Monosiga brevicollis AF100940
281703
Monosiga brevicollis
Prymnesium parvum f. patelliferum
804499
Prymnesium parvum f. patelliferum
Spizellomyces acuminatus M59759
873125
Spizellomyces acuminatus
Cryptococcus neoformans L05428
634633
Cryptococcus neoformans
Amanita muscaria AF026631
75257
Amanita muscaria
Pneumocystis wakefieldiae L27658
435892
Pneumocystis wakefieldiae
Candida albicans X53497
1034966
Candida albicans
Vannella anglica AF099101
679939
Vannella anglica
Dictyostelium discoideum X00601
160850
Dictyostelium discoideum
Physarum polycephalum X13160
422679
Physarum polycephalum
Euglena gracilis M12677
1073327
Euglena gracilis
Trypanosoma brucei M12676
494245
Trypanosoma brucei
Thalia democratica AF158725
674935
Thalia democratica
Gracilaria verrucosa Y11508
971132
Gracilariopsis longissima
Trypanosoma cruzi M31432
779555
Trypanosoma cruzi
Filamoeba nolandi AF293896
263572
Filamoeba nolandi
Gephyramoeba sp. AF293897
470549
Gephyramoeba sp. ATCC50654
Hartmannella vermiformis M95168
68580
Vermamoeba vermiformis
Echinamoeba exundans AF293895
263574
Echinamoeba exundans
Saccamoeba limax AF293902
930700
Saccamoeba limax
Amoeba proteus AJ314604
68587
Amoeba proteus
Leptomyxa reticulata AF293898
263578
Leptomyxa reticulata
Goniomonas truncata U03072
914450
Goniomonas truncata
Chilomonas paramecium L28811
303531
Cryptomonas paramecium
Pamaria palmata Y11506
5305439
Clavaria palmata
Guillardia theta X57162
5247740
Guillardia theta
Cyanophora paradoxa X68483
878960
Cyanophora paradoxa
Glaucocystis nostochinearum X70803
716815
Glaucocystis nostochinearum
Apusomonas proboscidea L37037
918390
Apusomonas proboscidea
Mesostigma viride AJ250109
976425
Mesostigma viride
Dunaliella salina M84320
347109
Dunaliella salina
Chlamydomonas reinhardtii M32703
33153
Chlamydomonas reinhardtii
Ulva rigida AJ005414
1036621
Ulva rigida
Picocystis salinarum AF125167
1044820
Picocystis salinarum
Equisetum robustum X78890
308005
Equisetum robustum
Cyanidioschyzon meloae AB158483
85503
Cyanidioschyzon merolae
Oryza sativa X00755
709894
Oryza sativa
Pisum sativum U43011
359905
Pisum sativum
Helianthus annuus AF107577
515712
Helianthus annuus
Compsopogon coeruleus AF087128
339611
Compsopogon caeruleus
Cyanidioschyzon merolae AB158485
85503
Cyanidioschyzon merolae
Flintiella sanguinaria AF168621
668453
Flintiella sanguinaria
Glaucosphaera vacuolata AB045583
142559
Glaucosphaera vacuolata
Palmaria palmata X53500
725574
Palmaria palmata
Coccolithus pelagicus AJ246261
1073871
Coccolithus pelagicus
Prymnesium parvum AJ246269
937580
Prymnesium parvum
Guillardia theta AF289037
5247740
Guillardia theta
Pavlova gyrans U40922
536545
Pavlova gyrans
Loxodes striatus U24248
890496
Loxodes striatus
Blepharisma americanum M97909
703496
Blepharisma americanum
Oxytricha nova M14601
390566
Sterkiella nova
Oxytricha saltans AF370028
920832
Oxytricha saltans
Paramecium tetraurelia X03772
568130
Paramecium tetraurelia
Tetrahymena thermophila X56165
180195
Tetrahymena thermophila
Prorodon teres X71140
1010083
Prorodon teres
Theileria cervi AF086804
418319
Theileria cervi
Toxoplasma gondii L24381
252145
Toxoplasma gondii
Goniomonas truncata DQ980470
914450
Goniomonas truncata
Perkinsus marinus AF126013
438694
Perkinsus marinus
Heterocapsa triquetra AF022198
882515
Heterocapsa triquetra
Prorocentrum concavum Y16237
1065895
Prorocentrum concavum
Crypthecodinium cohnii FJ821501
621393
Crypthecodinium cohnii
Papiliocellulus elegans X85388
28086
Papiliocellulus elegans
Phaeodactylum tricornutum AJ269501
1095879
Phaeodactylum tricornutum
Stephanopyxis nipponica M87330
642788
Stephanopyxis nipponica
Ectocarpus siliculosus L43062
878345
Ectocarpus siliculosus
Pelagomonas calceolata U14389
217467
Pelagomonas calceolata
Apodachlya brachynema AJ238663
395251
Apodachlya brachynema
Goniomonas sp. AY752989
952118
Goniomonas sp. ATCC 50108
Hyphochytrium catenoides X80344
435099
Hyphochytrium catenoides
Cafeteria roenbergensis L27633
215706
Cafeteria roenbergensis
Labyrinthuloides minuta L27634
164912
Labyrinthuloides minuta
Telonema subtilis AJ564771
4738975
Telonema subtile
Pterocystis sp. AY268043
631191
Pterocystis sp. Devon
Chlamydaster sterni AF534709
203541
Chlamydaster sterni
Raphidiophrys ambigua AF534708
607131
Raphidiophrys ambigua
Massisteria marina AF411286
481578
Massisteria marina
Gymnophrys cometa AJ514866
4019226
Gymnophrys cometa
Dimorpha sp. EF455769
Crithidia fasciculata Y00055
192253
Crithidia fasciculata
Bigelowiella natans AF054832
5260606
Bigelowiella natans
Clathrulina elegans AY305009
972895
Clathrulina elegans
Hedriocystis reticulata AY305010
446837
Hedriocystis reticulata
Thaumatomonas seravini EF455776
592137
Thaumatomonas seravini
Euglypha rotunda X77692
247675
Euglypha rotunda
Paulinella chromatophora X81811
247676
Paulinella chromatophora
Heteromita globosa AY496043
554899
Heteromita globosa
Ebria tripatita DQ303923
667702
Ebria tripartita
Lecythium sp. AJ514867
4019288
Lecythium sp.
Protaspis grandis DQ303924
667704
Protaspis grandis
Trypanosoma brucei X05682
494245
Trypanosoma brucei
Cercomonas longicauda AF101052
513901
Cercomonas longicauda
Gromia ovifformis AJ457815
962362
Gromia oviformis
Filoreta tenera EF514503
4021632
Corallomyxa tenera
Phagomyxa odontellae AF310904
423152
Phagomyxa odontellae
Sorosphaera veronicae AF310900
423143
Sorosphaera veronicae
Spongospora subterranea AY604173
41886
Spongospora subterranea
Plasmodiophora brassicae U18981
934409
Plasmodiophora brassicae
Reticulomyxa filosa AJ132367
434296
Reticulomyxa filosa
Allogromia sp. X86093
440174
Allogromia sp. 12957
Cycloclypeus carpenteri AJ879133
941350
Cycloclypeus carpenteri
Trypanosoma cruzi L22334
779555
Trypanosoma cruzi
Ammonia beccarii X86094
681846
Ammonia beccarii
Collozoum amoeboides CL09 AB613239
409680
Collozoum amoeboides
Sphaerozoum punctatum CL17 AB613248
1093165
Sphaerozoum punctatum
Pterocorys zancleus AB430759
137452
Pterocorys zancleus
Larcopyle buetschlii KT080 AB613231
181612
Larcopyle butschlii
Dictyocoryne truncatum AB430757
925438
Dictyocoryne truncatum
Sticholonche sp. AY268045
543281
Sticholonche sp. JJP-2003
Dorataspid sp. AM178586
568584
Dorataspid sp. 915
Caenorhabditis elegans NM_074225
395048
Caenorhabditis elegans (species in subfamily Peloderinae)
Dendronephthya klunzingeri Y17848
1011824
Dendronephthya klunzingeri
Euglena gracilis X53361
1073327
Euglena gracilis
Trichoplax adhaerens XM_002113141
570365
Trichoplax adhaerens
Bombyx mori GU324473
440274
Bombyx mori
Drosophila melanogaster X03810
505714
Drosophila melanogaster
Homo sapiens A AK291607
770315
Homo sapiens
Mus musculus A AK147641
182316
Mus musculus albula
Mus musculus G AK135366
102
Mus musculus gentilulus
Homo sapiens G AK297367
770315
Homo sapiens
Monosiga brevicollis AY226081
281703
Monosiga brevicollis
Proterospongia sp. AY226082
715814
Proterospongia
Corallochytrium limacisporum AY236712
574695
Corallochytrium limacisporum
Mus musculus J00623
542509
Mus musculus
Chlamydaster sterni EF681909
203541
Chlamydaster sterni
Cryptococcus neoformans var. grubii AF384808
61545
Cryptococcus neoformans var. grubii
Candida albicans X81025
1034966
Candida albicans
Aspergillus niger Y11528
300201
Aspergillus niger
Andalucia incarcerata EU334886
813154
Andalucia incarcerata
Andalucia godoyi EU334880
83127
Andalucia godoyi
Cyanidioschyzon merolae AB095186
85503
Cyanidioschyzon merolae
Carpediemonas membranifera DQ295219
260292
Carpediemonas membranifera
Retortamonas sp. EF551172
583966
Retortamonas sp. ATCC 50375
Spironucleus barkhanus DQ295
614625
Spironucleus barkhanus
Hexamita inflata AY462239
202782
Hexamita inflata
Pterocystis tropica AY752993
631190
Pterocystis tropica
Euglena gracilis AY288511
1073327
Euglena gracilis
Rhynchopus sp. AY122622
1084516
Rhynchopus sp. ATCC 50226
Diplonema papillatum AY122623
178087
Diplonema papillatum
Trypanoplasma borreli AY122628
222235
Trypanoplasma borreli
Bodo saliens AY122627
825224
Neobodo saliens
Trimastix marina DQ295223
4739019
Trimastix marina
Trimastix pyriformis EU327684
4739021
Trimastix pyriformis
Spumella uniguttata AY391254
205221
Spumella uniguttata
Mallomonas rasilis AY729857
422442
Mallomonas rasilis
Ectocarpus siliculosus FN647986
878345
Ectocarpus siliculosus
Apusomonas proboscidea DQ980467
918390
Apusomonas proboscidea
Phaeodactylum tricornutum AY729859
1095879
Phaeodactylum tricornutum
Heterosigma akashiwo AY729854
725551
Heterosigma akashiwo
Plectospira myriandra AY729861
908524
Plectospira myriandra
Thraustotheca clavata AY729864
965750
Thraustotheca clavata
Apodachlya brachynema AY729852
395251
Apodachlya brachynema
Brevilegnia macrospora AY729853
1048359
Brevilegnia macrospora
Pythium graminicola AY729862
223258
Pythium graminicola
Apusomonas proboscidea DQ980460
918390
Apusomonas proboscidea
Amastigomonas marina AY236711
952117
Amastigomonas marina
Chlamydomonas reinhardtii XM_001695212
33153
Chlamydomonas reinhardtii
Glaucocystis nostochinearum AY216931
716815
Glaucocystis nostochinearum
Arabidopsis thaliana 1 AY128296
309263
Arabidopsis thaliana
Oryza sativa 1 AK061896
709894
Oryza sativa
Zea mays NM_001141944
605194
Zea mays
Triticum aestivum DQ665784
31926
Triticum aestivum
Hordeum vulgare AY325266
657948
Hordeum vulgare
Lycopersicon esculentum AY368907
378964
Solanum lycopersicum (species in subgenus Lycopersicon)
Arabidopsis thaliana G AY128805
309263
Arabidopsis thaliana
Oryza sativa G CT830927
709894
Oryza sativa
Mesostigma viride DQ980450
976425
Mesostigma viride
Cyanophora paradoxa DQ980445
878960
Cyanophora paradoxa
Cyanophora paradoxa AY216932
878960
Cyanophora paradoxa
Glaucocystis nostochinearum AB300198
716815
Glaucocystis nostochinearum
Telonema subtile AM237830
4738975
Telonema subtile
Goniomonas sp. AY236713
952118
Goniomonas sp. ATCC 50108
Goniomonas truncata DQ980448
914450
Goniomonas truncata
Guillardia theta AY729863
5247740
Guillardia theta
Raphidiophrys contractilis AB288082
587061
Raphidiophrys contractilis
Isochrysis galbana AY729856
955647
Isochrysis galbana
Prymnesium parvum AY729865
937580
Prymnesium parvum
Pavlova lutheri AY729858
151008
Pavlova lutheri
Trichomonas vaginalis XM_001317510
745845
Trichomonas vaginalis
Chlamydomonas reinhardtii EU410621
33153
Chlamydomonas reinhardtii
Malawimonas jakobiformis DQ295220
935423
Malawimonas jakobiformis
Cryptosporidium parvum XM_626924
775251
Cryptosporidium parvum
Theileria parva M57386
302422
Theileria parva
Babesia bovis AF136649
826545
Babesia bovis
Toxoplasma gondii AY344115
252145
Toxoplasma gondii
Monocystis agilis AY391262
91094
Monocystis agilis
Perkinsus marinus AY391259
438694
Perkinsus marinus
Heterocapsa triquetra AY729855
882515
Heterocapsa triquetra
Oxytricha sp. DQ062088
854511
Oxytricha sp.
Halteria grandinella AY391253
129122
Halteria grandinella
Chlorella ellipsoidea D17810
339008
Pseudochlorella pringsheimii
Paramecium tetraurelia XM_001424132
568130
Paramecium tetraurelia
Tetrahymena thermophila XM_001009780
180195
Tetrahymena thermophila
Tetrahymena bergeri AY391257
11752
Tetrahymena bergeri
Tetrahymena pyriformis AF287229
754194
Tetrahymena pyriformis
Dictyostelium discoideum XM_637298
160850
Dictyostelium discoideum
Naegleria gruberi XM_002682573
641873
Naegleria gruberi
Gymnophrys sp. GQ377653
248515
Cercomonas sp. C-83
Bigelowiella natans XM_001712767
5260606
Bigelowiella natans
Thaumatomonas sp. AY236717
554905
Thaumatomonas sp.
Reticulomyxa filosa EST
434296
Reticulomyxa filosa
Hylcmium splendens AJ271024
734788
Hylocomium splendens
Larcopyle buetschlii KT080 CL07 AB613224
181612
Larcopyle butschlii
Pellia neesiana AJ271021
836467
Pellia neesiana
Bucegia romanica AJ271022
683246
Bucegia romanica
Drosophila melanogaster M21017
505714
Drosophila melanogaster
Andreaea nivalis AJ271023
403417
Andreaea nivalis
Clathrulina elegans
972895
Clathrulina elegans
Hedriocystis reticulata
446837
Hedriocystis reticulata
Dimorpha sp.
Gymnophrys cometa
4019226
Gymnophrys cometa
Cercomonas longicauda
513901
Cercomonas longicauda
Heteromita globosa
554899
Heteromita globosa
Paulinella chromatophora
247676
Paulinella chromatophora
Euglypha rotunda
247675
Euglypha rotunda
Paracercomonas marina
620926
Paracercomonas marina
Funaria hygrometrica X80212
765280
Funaria hygrometrica
Protaspis grandis
667704
Protaspis grandis
Lecythium sp.
4019288
Lecythium sp.
Massisteria marina
481578
Massisteria marina
Partenskyella glossopodia
1003448
Partenskyella glossopodia
Phagomyxa odontellae
423152
Phagomyxa odontellae
Sorosphaera veronicae
423143
Sorosphaera veronicae
Spongospora subterranea
41886
Spongospora subterranea
Mesostigma viride DQ980472
976425
Mesostigma viride
Filoreta tenera
4021632
Corallomyxa tenera
Allogromia sp.
440174
Allogromia sp. 12957
Cycloclypeus carpenteri
941350
Cycloclypeus carpenteri
Acantharia composite
45752
Acantharia (class in Rhizaria)
Oryza sativa M11585
709894
Oryza sativa
Sticholonche sp. composite
543279
Sticholonchidae
Dictyocoryne sp. composite
808203
Dictyocaryum
Spongodiscidae sp.
350021
Spongodiscidae
Pterocorys sp. composite
496576
Pterocarya
Polycystine-like environmental clone
566633
Polycystinea (class silva:AB179732/#5 in Rhizaria)
Uncultured marine Polycystinea clone
566633
Polycystinea (class silva:AB179732/#5 in Rhizaria)
Telonema subtile FJ973372
4738975
Telonema subtile
Plasmodiophora brassicae AB526849
934409
Plasmodiophora brassicae
Thaumatomonas sp. DQ980477
554905
Thaumatomonas sp.
Paracercomonas marina DQ386164
620926
Paracercomonas marina
Partenskyella glossopodia AB453011
1003448
Partenskyella glossopodia
Bigelowiella natans AF289036
5260606
Bigelowiella natans
Caenorhabditis elegans X03680
395048
Caenorhabditis elegans (species in subfamily Peloderinae)
Gromia oviformis X79511
962362
Gromia oviformis
Rosalina vilardeboana Z30148
781937
Rosalina vilardeboana
Trochamnina sp. Z30147
680242
Trochammina sp.
Glabratella mediterranensis Z30149
259252
Glabratella mediterranensis
Ammonia tepida Z30146
259251
Ammonia tepida
Rotaliella elatiana X78521
962363
Rotaliella elatiana
Uncultured marine Acantharea clone FJ032650
45752
Acantharia (class in Rhizaria)
Sticholonchidae-like environmental
Sticholonche-like environmental clone DQ386168
Dictyocoryne truncatum AB430758
925438
Dictyocoryne truncatum
Spongodiscidae sp. AB430760
350021
Spongodiscidae
Dugesia tigrina U78718
101228
Girardia tigrina
Larcopyle buetschlii KT080 CL03 AB613230
181612
Larcopyle butschlii
Sphaerozoum punctatum CL21 AB613247
1093165
Sphaerozoum punctatum
Collozoum amoeboides CL01 AB613238
409680
Collozoum amoeboides
Uncultured marine Polycystinea clone FJ032683
Pterocorys cf. zancleusAB430759
275556
Pterocorys cf. zancleus I
Polycystine-like environmental clone DQ386169
Homo sapiens AK316361
770315
Homo sapiens
Drosophia melanogaster NM_078497
505714
Drosophila melanogaster
Mus musculus M12866
542509
Mus musculus
Caenorhabditis elegans NM_073416
395048
Caenorhabditis elegans (species in subfamily Peloderinae)
Monosiga brevicollis AY026374
281703
Monosiga brevicollis
Monosiga brevicollis AY026072
281703
Monosiga brevicollis
Apusomonas proboscidea DQ980437
918390
Apusomonas proboscidea
Physarum polycephalum M59234
422679
Physarum polycephalum
Dictyostelium discoideum U25660
160850
Dictyostelium discoideum
Telonema subtilis FN392440
4738975
Telonema subtile
Prymnesium parvum AY729848
937580
Prymnesium parvum
Pavlova gyrans EF455731
536545
Pavlova gyrans
Isochrysis galbana AY729843
955647
Isochrysis galbana
Guillardia theta AB544304
5247740
Guillardia theta
Goniomonas truncata AF284837
914450
Goniomonas truncata
Maximum likelihood
node129
Source data for tree 'tree1'
node1
false
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
Maximum likelihood
node269
Source data for tree 'tree2'
node315
false
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
false
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
false
true
true
true
true
true
true
false
true
false
true
true
true
false
true
true
false
true
true
true
true
true
true
true
true
true
true
true
false
true
Maximum likelihood
node373
Source data for tree 'tree3'
node345
false
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
false
true
true
false
true
false
true
false
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
Maximum likelihood
node640
Source data for tree 'tree4'
node500
false
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
false
true
false
true
false
true
false
Maximum likelihood
node717
Source data for tree 'tree5'
node647
false
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
Maximum likelihood
node782
Source data for tree 'tree6'
node722
false
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
Maximum likelihood
node975
Source data for tree 'tree7'
node783
false
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
Maximum likelihood
Source data for tree 'tree8'
node996
false
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
false
true
false
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
false
true
true
Maximum likelihood
Source data for tree 'tree9'
node1161
false
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
true
false