{"sha": "c33806c9ee11db205ee8c02a42e31b1c3128e299", "data": {"nexml": {"@generator": "Phylografter nexml-json exporter", "@id": "study", "@nexml2json": "0.0.0", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "otus": {"@id": "otus1338", "otu": [{"@id": "otu243547", "@about": "#otu243547", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Onychiurus arcticus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 799602}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Megaphorura arctica"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl241929"}]}, {"@id": "otu243548", "@about": "#otu243548", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Plodia interpunctella"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 710461}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Plodia interpunctella"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl241930"}]}, {"@id": "otu243549", "@about": "#otu243549", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Apis mellifera"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 461645}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Apis mellifera"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl241931"}]}, {"@id": "otu243550", "@about": "#otu243550", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Baetis sp"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 796327}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Baetis sp. AB-2009"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl241932"}]}, {"@id": "otu243551", "@about": "#otu243551", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Laupala kohalensis"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 55726}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Laupala kohalensis"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl241933"}]}, {"@id": "otu243552", "@about": "#otu243552", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Aphis gossypii"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 1026471}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Aphis gossypii"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl241934"}]}, {"@id": "otu243553", "@about": "#otu243553", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Antheraea mylitta"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 371209}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Antheraea mylitta"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl241935"}]}, {"@id": "otu243554", "@about": "#otu243554", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Anopheles gambiae"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 793191}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Anopheles gambiae"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl241936"}]}, {"@id": "otu243555", "@about": "#otu243555", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Nasonia giraulti"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 729592}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Nasonia giraulti"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl241937"}]}, {"@id": "otu243556", "@about": "#otu243556", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Plutella xylostella"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 664811}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Plutella xylostella"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl241938"}]}, {"@id": "otu243557", "@about": "#otu243557", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Bombyx mori"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 440274}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Bombyx mori"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl241939"}]}, {"@id": "otu243558", "@about": "#otu243558", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Ischnura elegans"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 253311}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Ischnura elegans"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl241940"}]}, {"@id": "otu243559", "@about": "#otu243559", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Danaus plexippus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 190091}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Danaus plexippus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl241941"}]}, {"@id": "otu243560", "@about": "#otu243560", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Tribolium castaneum"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 148904}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Tribolium castaneum"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl241942"}]}, {"@id": "otu243561", "@about": "#otu243561", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Maconellicoccus hirsutus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 197458}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Maconellicoccus hirsutus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl241943"}]}], "@about": "#otus1338"}, "trees": {"@otus": "otus1338", "@id": "trees1338", "tree": [{"@label": "Fig. 2 ML+Bayesian topology", "@xsi:type": "nex:FloatTree", "node": [{"@root": true, "@id": "node591080", "@about": "#node591080"}, {"@id": "node591081", "@about": "#node591081"}, {"@id": "node591082", "@about": "#node591082"}, {"@id": "node591083", "@about": "#node591083"}, {"@id": "node591084", "@about": "#node591084"}, {"@id": "node591085", "@about": "#node591085"}, {"@id": "node591086", "@about": "#node591086"}, {"@id": "node591087", "@about": "#node591087"}, {"@otu": "otu243554", "@id": "node591088", "@about": "#node591088", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node591089", "@about": "#node591089"}, {"@id": "node591090", "@about": "#node591090"}, {"@id": "node591091", "@about": "#node591091"}, {"@otu": "otu243557", "@id": "node591092", "@about": "#node591092", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu243553", "@id": "node591093", "@about": "#node591093", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu243559", "@id": "node591094", "@about": "#node591094", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node591095", "@about": "#node591095"}, {"@otu": "otu243556", "@id": "node591096", "@about": "#node591096", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu243548", "@id": "node591097", "@about": "#node591097", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu243560", "@id": "node591098", "@about": "#node591098", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node591099", "@about": "#node591099"}, {"@otu": "otu243549", "@id": "node591100", "@about": "#node591100", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu243555", "@id": "node591101", "@about": "#node591101", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node591102", "@about": "#node591102"}, {"@otu": "otu243552", "@id": "node591103", "@about": "#node591103", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu243561", "@id": "node591104", "@about": "#node591104", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu243551", "@id": "node591105", "@about": "#node591105", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu243550", "@id": "node591106", "@about": "#node591106", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu243558", "@id": "node591107", "@about": "#node591107", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu243547", "@id": "node591108", "@about": "#node591108", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}], "edge": [{"@source": "node591080", "@target": "node591081", "@id": "edge591081", "@about": "#edge591081"}, {"@source": "node591081", "@target": "node591082", "@id": "edge591082", "@about": "#edge591082"}, {"@source": "node591082", "@target": "node591083", "@id": "edge591083", "@about": "#edge591083"}, {"@source": "node591083", "@target": "node591084", "@id": "edge591084", "@about": "#edge591084"}, {"@source": "node591084", "@target": "node591085", "@id": "edge591085", "@about": "#edge591085"}, {"@source": "node591085", "@target": "node591086", "@id": "edge591086", "@about": "#edge591086"}, {"@source": "node591086", "@target": "node591087", "@id": "edge591087", "@about": "#edge591087"}, {"@source": "node591087", "@target": "node591088", "@id": "edge591088", "@about": "#edge591088"}, {"@source": "node591087", "@target": "node591089", "@id": "edge591089", "@about": "#edge591089"}, {"@source": "node591089", "@target": "node591090", "@id": "edge591090", "@about": "#edge591090"}, {"@source": "node591090", "@target": "node591091", "@id": "edge591091", "@about": "#edge591091"}, {"@source": "node591091", "@target": "node591092", "@id": "edge591092", "@about": "#edge591092"}, {"@source": "node591091", "@target": "node591093", "@id": "edge591093", "@about": "#edge591093"}, {"@source": "node591090", "@target": "node591094", "@id": "edge591094", "@about": "#edge591094"}, {"@source": "node591089", "@target": "node591095", "@id": "edge591095", "@about": "#edge591095"}, {"@source": "node591095", "@target": "node591096", "@id": "edge591096", "@about": "#edge591096"}, {"@source": "node591095", "@target": "node591097", "@id": "edge591097", "@about": "#edge591097"}, {"@source": "node591086", "@target": "node591098", "@id": "edge591098", "@about": "#edge591098"}, {"@source": "node591085", "@target": "node591099", "@id": "edge591099", "@about": "#edge591099"}, {"@source": "node591099", "@target": "node591100", "@id": "edge591100", "@about": "#edge591100"}, {"@source": "node591099", "@target": "node591101", "@id": "edge591101", "@about": "#edge591101"}, {"@source": "node591084", "@target": "node591102", "@id": "edge591102", "@about": "#edge591102"}, {"@source": "node591102", "@target": "node591103", "@id": "edge591103", "@about": "#edge591103"}, {"@source": "node591102", "@target": "node591104", "@id": "edge591104", "@about": "#edge591104"}, {"@source": "node591083", "@target": "node591105", "@id": "edge591105", "@about": "#edge591105"}, {"@source": "node591082", "@target": "node591106", "@id": "edge591106", "@about": "#edge591106"}, {"@source": "node591081", "@target": "node591107", "@id": "edge591107", "@about": "#edge591107"}, {"@source": "node591080", "@target": "node591108", "@id": "edge591108", "@about": "#edge591108"}], "@id": "tree2666", "@about": "#tree2666", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthDescription", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthTimeUnit", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:curatedType", "@datatype": "xsd:string", "$": "Bayesian inference "}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:inGroupClade", "@datatype": "xsd:string", "$": "node591081"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:nearestTaxonMRCAName", "@datatype": "xsd:string", "$": "Pterygota (in Dicondylia)"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:nearestTaxonMRCAOttId", "@datatype": "xsd:string", "$": "1048707"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:outGroupEdge", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:specifiedRoot", "@datatype": "xsd:string", "$": "node591080"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:unrootedTree", "@datatype": "xsd:boolean", "$": false}]}, {"@label": "Untitled (tree6535)", "@xsi:type": "nex:FloatTree", "node": [{"@root": true, "@id": "node1133394", "@about": "#node1133394"}, {"@id": "node1133395", "@about": "#node1133395"}, {"@id": "node1133396", "@about": "#node1133396"}, {"@id": "node1133397", "@about": "#node1133397"}, {"@id": "node1133398", "@about": "#node1133398"}, {"@id": "node1133399", "@about": "#node1133399"}, {"@id": "node1133400", "@about": "#node1133400"}, {"@otu": "otu243557", "@id": "node1133401", "@about": "#node1133401", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu243559", "@id": "node1133402", "@about": "#node1133402", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu243554", "@id": "node1133403", "@about": "#node1133403", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu243560", "@id": "node1133404", "@about": "#node1133404", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu243551", "@id": "node1133405", "@about": "#node1133405", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu243550", "@id": "node1133406", "@about": "#node1133406", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu243558", "@id": "node1133407", "@about": "#node1133407", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu243547", "@id": "node1133408", "@about": "#node1133408", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}], "edge": [{"@source": "node1133394", "@target": "node1133395", "@id": "edge1133395", "@about": "#edge1133395"}, {"@source": "node1133395", "@target": "node1133396", "@id": "edge1133396", "@about": "#edge1133396"}, {"@source": "node1133396", "@target": "node1133397", "@id": "edge1133397", "@about": "#edge1133397"}, {"@source": "node1133397", "@target": "node1133398", "@id": "edge1133398", "@about": "#edge1133398"}, {"@source": "node1133398", "@target": "node1133399", "@id": "edge1133399", "@about": "#edge1133399"}, {"@source": "node1133399", "@target": "node1133400", "@id": "edge1133400", "@about": "#edge1133400"}, {"@source": "node1133400", "@target": "node1133401", "@id": "edge1133401", "@about": "#edge1133401"}, {"@source": "node1133400", "@target": "node1133402", "@id": "edge1133402", "@about": "#edge1133402"}, {"@source": "node1133399", "@target": "node1133403", "@id": "edge1133403", "@about": "#edge1133403"}, {"@source": "node1133398", "@target": "node1133404", "@id": "edge1133404", "@about": "#edge1133404"}, {"@source": "node1133397", "@target": "node1133405", "@id": "edge1133405", "@about": "#edge1133405"}, {"@source": "node1133396", "@target": "node1133406", "@id": "edge1133406", "@about": "#edge1133406"}, {"@source": "node1133395", "@target": "node1133407", "@id": "edge1133407", "@about": "#edge1133407"}, {"@source": "node1133394", "@target": "node1133408", "@id": "edge1133408", "@about": "#edge1133408"}], "@id": "tree6535", "@about": "#tree6535", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthDescription", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthMode", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthTimeUnit", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:curatedType", "@datatype": "xsd:string", "$": "Fig. 3 ML+Bayesian topology"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:inGroupClade", "@datatype": "xsd:string", "$": "node1133395"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:outGroupEdge", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:specifiedRoot", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:unrootedTree", "@datatype": "xsd:boolean", "$": true}]}], "@about": "#trees1338"}, "@about": "#study", "meta": [{"agent": [{"@description": "validator of NexSON constraints as well as constraints that would allow a study to be imported into the Open Tree of Life's phylogenetic synthesis tools", "@id": "peyotl-validator", "@name": "validate_ot_nexson.py", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": ["--embed", "--agent-only"], "otherProperty": [{"name": "pythonVersion", "value": "2.7.5+"}, {"name": "pythonImplementation", "value": "CPython"}]}, "@about": "#peyotl-validator"}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0", "@about": "#opentree-curation-webapp"}], "@xsi:type": "nex:LiteralMeta", "@property": "ot:agents"}, {"annotation": [{"@dateCreated": "2014-08-18T20:02:06.031Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"searchContext": {"$": "All life"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}]}}, "refersTo": {"@top": {"$": "meta"}}}], "@about": "#otu-mapping-hints"}, {"@dateCreated": "2014-08-18T20:02:06.031Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": []}}, "refersTo": {"@top": {"$": "meta"}}}], "@about": "#supporting-files-metadata"}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:branchLengthMode"], "refersTo": {"@top": "trees", "@idref": "tree2666", "@treesID": "trees1338", "@treeID": "tree2666"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nearestTaxonMRCAName", "^ot:nearestTaxonMRCAOttId"], "refersTo": {"@top": "trees", "@idref": "tree2666", "@treesID": "trees1338", "@treeID": "tree2666"}, "@severity": "WARNING"}], "@about": "#peyotl-validator-event"}], "@xsi:type": "nex:LiteralMeta", "@property": "ot:annotationEvents"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:candidateTreeForSynthesis", "@datatype": "xsd:string", "$": "tree2666"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:comment", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:curatorName", "@datatype": "xsd:string", "$": "Chris Owen"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:curatorName", "@datatype": "xsd:string", "$": "Joseph W. Brown"}, {"@href": "http://purl.org/phylo/treebase/phylows/study/TB2:S10115", "@xsi:type": "nex:ResourceMeta", "@rel": "ot:dataDeposit"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:focalClade", "@datatype": "xsd:int", "$": 1048707}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:focalCladeOTTTaxonName", "@datatype": "xsd:string", "$": "Pterygota"}, {"message": [], "@xsi:type": "nex:LiteralMeta", "@property": "ot:messages"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:notIntendedForSynthesis", "@datatype": "xsd:boolean", "$": false}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:studyId", "@datatype": "xsd:string", "$": "pg_1338"}, {"@href": "http://dx.doi.org/10.1093/molbev/msp191", "@xsi:type": "nex:ResourceMeta", "@rel": "ot:studyPublication"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:studyPublicationReference", "@datatype": "xsd:string", "$": "Simon, S., Strauss S., Von haeseler A., & Hadrys H. 2009. A phylogenomic approach to resolve the basal pterygote divergence. Molecular Biology and Evolution 26 (12): 2719-2730."}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:studyYear", "@datatype": "xsd:int", "$": 2009}]}}, "branch2sha": {"master": "c33806c9ee11db205ee8c02a42e31b1c3128e299"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "23fa5e88bdf4e71b808c975e60790f623acaf4ef", "author_name": "Joseph W. Brown", "author_email": "ANONYMOUS", "date": "Mon, 18 Aug 2014 20:02:54 +0000", "date_ISO_8601": "2014-08-18 20:02:54 +0000", "relative_date": "12 years ago", "message_subject": "tree name", "message_body": "(Update Study #pg_1338 via OpenTree API)"}, {"id": "d33fb39501605772a074dffc82affa5344ea9a94", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Wed, 11 Jun 2014 22:18:34 -0500", "date_ISO_8601": "2014-06-11 22:18:34 -0500", "relative_date": "12 years ago", "message_subject": "corrected study ids"}, {"id": "f8a738aeda20a73750847484e110a85c7a3e0a12", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 10 Jun 2014 23:36:42 -0500", "date_ISO_8601": "2014-06-10 23:36:42 -0500", "relative_date": "12 years ago", "message_subject": "Migrating info from gcmdr to nexsons", "message_body": "using peyotl d69c8b180fce7703c7203a0b51712eab57e2988c\ndev/decorate_pg_studies_with_gcmdr_info.py\nto set:\n  ^ot:candidateTreeForSynthesis\n  ^ot:specifiedRoot, and\n  ^ot:unrootedTree\nproperties based on the use of the trees for synthesis study\nlists in gcmdr commit 35bf307e72bed4f59724762dde4a12965abcea92"}, {"id": "593d6fbab385716dc0a12f3fc95133e8b7479b37", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 29 Apr 2014 20:05:19 -0500", "date_ISO_8601": "2014-04-29 20:05:19 -0500", "relative_date": "12 years ago", "message_subject": "initial commit with phylografter files from 29 Apr, 2014"}]}