{"sha": "1bbbe21bdd9a32ef81abeb3f038a977fdc0e8e7b", "data": {"nexml": {"@generator": "Phylografter nexml-json exporter", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "validator of NexSON constraints as well as constraints that would allow a study to be imported into the Open Tree of Life's phylogenetic synthesis tools", "@id": "peyotl-validator", "@name": "validate_ot_nexson.py", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": ["--embed", "--agent-only"], "otherProperty": [{"name": "pythonVersion", "value": "2.7.5+"}, {"name": "pythonImplementation", "value": "CPython"}]}}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0"}]}, "^ot:annotationEvents": {"annotation": [{"@dateCreated": "2015-09-30T16:34:16.291Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"searchContext": {"$": "All life"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}, {"@active": true, "@valid": true, "new": {"$": "$1"}, "old": {"$": "^(\\S*\\s+\\S*).*"}}]}, "useFuzzyMatching": true}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2015-09-30T16:34:16.291Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": []}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675122", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675122"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675123", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675123"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675124", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675124"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675125", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675125"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675126", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675126"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675127", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675127"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675128", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675128"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675129", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675129"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675130", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675130"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675131", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675131"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675132", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675132"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675133", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675133"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675135", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675135"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675136", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675136"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675137", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675137"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675142", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675142"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675143", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675143"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675144", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675144"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675145", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675145"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675146", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675146"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675148", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675148"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675149", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675149"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675152", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675152"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675153", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675153"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675154", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675154"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675156", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675156"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675157", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675157"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675158", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675158"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675159", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675159"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675160", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675160"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675164", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675164"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675165", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675165"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675166", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675166"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675167", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675167"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675168", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675168"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675169", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675169"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675170", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675170"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675171", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675171"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675172", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675172"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675173", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675173"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675174", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675174"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675175", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675175"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675177", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675177"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675178", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675178"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675180", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675180"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675181", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675181"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675184", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675184"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675185", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675185"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675186", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675186"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675188", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675188"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node675189", "@treesID": "trees1727", "@treeID": "tree3475", "@nodeID": "node675189"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu272135", "otu272138", "otu272143", "otu272145", "otu272153", "otu272157", "otu272161", "otu272170", "otu272171", "otu272176", "otu272181", "otu272184"], "refersTo": {"@top": "otus", "@idref": "otus1727", "@otusID": "otus1727"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu272136", "otu272139", "otu272142", "otu272147", "otu272148", "otu272150", "otu272156", "otu272174", "otu272179", "otu272185"], "refersTo": {"@top": "otus", "@idref": "otus1727", "@otusID": "otus1727"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu272137", "otu272140", "otu272146", "otu272152", "otu272154", "otu272155", "otu272163", "otu272165", "otu272166", "otu272167", "otu272177", "otu272178", "otu272180", "otu272182", "otu272183"], "refersTo": {"@top": "otus", "@idref": "otus1727", "@otusID": "otus1727"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu272141", "otu272151"], "refersTo": {"@top": "otus", "@idref": "otus1727", "@otusID": "otus1727"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu272144", "otu272159"], "refersTo": {"@top": "otus", "@idref": "otus1727", "@otusID": "otus1727"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu272158", "otu272162", "otu272164", "otu272172", "otu272188"], "refersTo": {"@top": "otus", "@idref": "otus1727", "@otusID": "otus1727"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu272160", "otu272168", "otu272169", "otu272175", "otu272187"], "refersTo": {"@top": "otus", "@idref": "otus1727", "@otusID": "otus1727"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree3475", "@treesID": "trees1727", "@treeID": "tree3475"}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": ["tree3475"], "^ot:comment": "", "^ot:curatorName": ["Romina Gazis"], "^ot:dataDeposit": {"@href": "http://purl.org/phylo/treebase/phylows/study/TB2:S704"}, "^ot:focalClade": 889058, "^ot:focalCladeOTTTaxonName": "Sepedonium", "^ot:notIntendedForSynthesis": false, "^ot:otusElementOrder": ["otus1727"], "^ot:studyId": "pg_1727", "^ot:studyPublication": {"@href": "http://dx.doi.org/10.2307/3761625"}, "^ot:studyPublicationReference": "Sahr T., Ammer H., Besl H., & Fischer M. 1999. Infrageneric classification of the boleticolous genus Sepedonium: species delimitation and phylogenetic relationships. Mycologia, 91(6): 935-943.", "^ot:studyYear": 1999, "^ot:tag": [], "^ot:treesElementOrder": ["trees1727"], "^xhtml:license": {"@href": "http://creativecommons.org/publicdomain/zero/1.0/", "@name": "CC0"}, "otusById": {"otus1727": {"otuById": {"otu272135": {"^ot:originalLabel": "Sepedonium laevigatum S175", "^ot:ottId": 264480, "^ot:ottTaxonName": "Sepedonium laevigatum", "^ot:treebaseOTUId": "Tl95942"}, "otu272136": {"^ot:originalLabel": "Sepedonium microspermum S06", "^ot:ottId": 320206, "^ot:ottTaxonName": "Hypomyces microspermus", "^ot:treebaseOTUId": "Tl95943"}, "otu272137": {"^ot:originalLabel": "Sepedonium chrysospermum S53", "^ot:ottId": 915766, "^ot:ottTaxonName": "Hypomyces chrysospermus", "^ot:treebaseOTUId": "Tl95944"}, "otu272138": {"^ot:originalLabel": "Sepedonium laevigatum S50", "^ot:ottId": 264480, "^ot:ottTaxonName": "Sepedonium laevigatum", "^ot:treebaseOTUId": "Tl95945"}, "otu272139": {"^ot:originalLabel": "Sepedonium microspermum S77", "^ot:ottId": 320206, "^ot:ottTaxonName": "Hypomyces microspermus", "^ot:treebaseOTUId": "Tl95946"}, "otu272140": {"^ot:originalLabel": "Sepedonium chrysospermum S47", "^ot:ottId": 915766, "^ot:ottTaxonName": "Hypomyces chrysospermus", "^ot:treebaseOTUId": "Tl95947"}, "otu272141": {"^ot:originalLabel": "Sepedonium brunneum S172", "^ot:ottId": 5317073, "^ot:ottTaxonName": "Sepedonium brunneum", "^ot:treebaseOTUId": "Tl95948"}, "otu272142": {"^ot:originalLabel": "Sepedonium microspermum S42", "^ot:ottId": 320206, "^ot:ottTaxonName": "Hypomyces microspermus", "^ot:treebaseOTUId": "Tl95949"}, "otu272143": {"^ot:originalLabel": "Sepedonium laevigatum S13", "^ot:ottId": 264480, "^ot:ottTaxonName": "Sepedonium laevigatum", "^ot:treebaseOTUId": "Tl95950"}, "otu272144": {"^ot:originalLabel": "Sepedonium tulasneanum S29", "^ot:ottId": 3700773, "^ot:ottTaxonName": "Leiosepium tulasneanum", "^ot:treebaseOTUId": "Tl95951"}, "otu272145": {"^ot:originalLabel": "Sepedonium laevigatum S41", "^ot:ottId": 264480, "^ot:ottTaxonName": "Sepedonium laevigatum", "^ot:treebaseOTUId": "Tl95952"}, "otu272146": {"^ot:originalLabel": "Sepedonium chrysospermum S63", "^ot:ottId": 915766, "^ot:ottTaxonName": "Hypomyces chrysospermus", "^ot:treebaseOTUId": "Tl95953"}, "otu272147": {"^ot:originalLabel": "Sepedonium microspermum S24", "^ot:ottId": 320206, "^ot:ottTaxonName": "Hypomyces microspermus", "^ot:treebaseOTUId": "Tl95954"}, "otu272148": {"^ot:originalLabel": "Sepedonium microspermum S162", "^ot:ottId": 320206, "^ot:ottTaxonName": "Hypomyces microspermus", "^ot:treebaseOTUId": "Tl95955"}, "otu272149": {"^ot:originalLabel": "Hypomyces boletiphagus S179", "^ot:ottId": 3700704, "^ot:ottTaxonName": "Hypomyces boletiphagus", "^ot:treebaseOTUId": "Tl95956"}, "otu272150": {"^ot:originalLabel": "Sepedonium microspermum S23", "^ot:ottId": 320206, "^ot:ottTaxonName": "Hypomyces microspermus", "^ot:treebaseOTUId": "Tl95957"}, "otu272151": {"^ot:originalLabel": "Sepedonium brunneum S171", "^ot:ottId": 5317073, "^ot:ottTaxonName": "Sepedonium brunneum", "^ot:treebaseOTUId": "Tl95958"}, "otu272152": {"^ot:originalLabel": "Sepedonium chrysospermum S86", "^ot:ottId": 915766, "^ot:ottTaxonName": "Hypomyces chrysospermus", "^ot:treebaseOTUId": "Tl95959"}, "otu272153": {"^ot:originalLabel": "Sepedonium laevigatum S178", "^ot:ottId": 264480, "^ot:ottTaxonName": "Sepedonium laevigatum", "^ot:treebaseOTUId": "Tl95960"}, "otu272154": {"^ot:originalLabel": "Sepedonium chrysospermum S58", "^ot:ottId": 915766, "^ot:ottTaxonName": "Hypomyces chrysospermus", "^ot:treebaseOTUId": "Tl95961"}, "otu272155": {"^ot:originalLabel": "Sepedonium chrysospermum S68", "^ot:ottId": 915766, "^ot:ottTaxonName": "Hypomyces chrysospermus", "^ot:treebaseOTUId": "Tl95962"}, "otu272156": {"^ot:originalLabel": "Sepedonium microspermum S177", "^ot:ottId": 320206, "^ot:ottTaxonName": "Hypomyces microspermus", "^ot:treebaseOTUId": "Tl95963"}, "otu272157": {"^ot:originalLabel": "Sepedonium laevigatum S185", "^ot:ottId": 264480, "^ot:ottTaxonName": "Sepedonium laevigatum", "^ot:treebaseOTUId": "Tl95964"}, "otu272158": {"^ot:originalLabel": "Sepedonium chalcipori S35", "^ot:ottId": 264477, "^ot:ottTaxonName": "Sepedonium chalcipori", "^ot:treebaseOTUId": "Tl95965"}, "otu272159": {"^ot:originalLabel": "Sepedonium tulasneanum S165", "^ot:ottId": 3700773, "^ot:ottTaxonName": "Leiosepium tulasneanum", "^ot:treebaseOTUId": "Tl95966"}, "otu272160": {"^ot:originalLabel": "Sepedonium ampullosporum S51", "^ot:ottId": 889066, "^ot:ottTaxonName": "Sepedonium ampullosporum", "^ot:treebaseOTUId": "Tl95967"}, "otu272161": {"^ot:originalLabel": "Sepedonium laevigatum S176", "^ot:ottId": 264480, "^ot:ottTaxonName": "Sepedonium laevigatum", "^ot:treebaseOTUId": "Tl95968"}, "otu272162": {"^ot:originalLabel": "Sepedonium chalcipori S44", "^ot:ottId": 264477, "^ot:ottTaxonName": "Sepedonium chalcipori", "^ot:treebaseOTUId": "Tl95969"}, "otu272163": {"^ot:originalLabel": "Sepedonium chrysospermum S93", "^ot:ottId": 915766, "^ot:ottTaxonName": "Hypomyces chrysospermus", "^ot:treebaseOTUId": "Tl95970"}, "otu272164": {"^ot:originalLabel": "Sepedonium chalcipori S32", "^ot:ottId": 264477, "^ot:ottTaxonName": "Sepedonium chalcipori", "^ot:treebaseOTUId": "Tl95971"}, "otu272165": {"^ot:originalLabel": "Sepedonium chrysospermum S89", "^ot:ottId": 915766, "^ot:ottTaxonName": "Hypomyces chrysospermus", "^ot:treebaseOTUId": "Tl95972"}, "otu272166": {"^ot:originalLabel": "Sepedonium chrysospermum S37", "^ot:ottId": 915766, "^ot:ottTaxonName": "Hypomyces chrysospermus", "^ot:treebaseOTUId": "Tl95973"}, "otu272167": {"^ot:originalLabel": "Sepedonium chrysospermum S84", "^ot:ottId": 915766, "^ot:ottTaxonName": "Hypomyces chrysospermus", "^ot:treebaseOTUId": "Tl95974"}, "otu272168": {"^ot:originalLabel": "Sepedonium ampullosporum S158", "^ot:ottId": 889066, "^ot:ottTaxonName": "Sepedonium ampullosporum", "^ot:treebaseOTUId": "Tl95975"}, "otu272169": {"^ot:originalLabel": "Sepedonium ampullosporum S87", "^ot:ottId": 889066, "^ot:ottTaxonName": "Sepedonium ampullosporum", "^ot:treebaseOTUId": "Tl95976"}, "otu272170": {"^ot:originalLabel": "Sepedonium laevigatum S173", "^ot:ottId": 264480, "^ot:ottTaxonName": "Sepedonium laevigatum", "^ot:treebaseOTUId": "Tl95977"}, "otu272171": {"^ot:originalLabel": "Sepedonium laevigatum S45", "^ot:ottId": 264480, "^ot:ottTaxonName": "Sepedonium laevigatum", "^ot:treebaseOTUId": "Tl95978"}, "otu272172": {"^ot:originalLabel": "Sepedonium chalcipori S33", "^ot:ottId": 264477, "^ot:ottTaxonName": "Sepedonium chalcipori", "^ot:treebaseOTUId": "Tl95979"}, "otu272173": {"^ot:originalLabel": "Sepedonium chlorinum S38", "^ot:ottId": 265571, "^ot:ottTaxonName": "Hypomyces chlorinigenus", "^ot:treebaseOTUId": "Tl95980"}, "otu272174": {"^ot:originalLabel": "Sepedonium microspermum S155", "^ot:ottId": 320206, "^ot:ottTaxonName": "Hypomyces microspermus", "^ot:treebaseOTUId": "Tl95981"}, "otu272175": {"^ot:originalLabel": "Sepedonium ampullosporum S15", "^ot:ottId": 889066, "^ot:ottTaxonName": "Sepedonium ampullosporum", "^ot:treebaseOTUId": "Tl95982"}, "otu272176": {"^ot:originalLabel": "Sepedonium laevigatum S174", "^ot:ottId": 264480, "^ot:ottTaxonName": "Sepedonium laevigatum", "^ot:treebaseOTUId": "Tl95983"}, "otu272177": {"^ot:originalLabel": "Sepedonium chrysospermum S160", "^ot:ottId": 915766, "^ot:ottTaxonName": "Hypomyces chrysospermus", "^ot:treebaseOTUId": "Tl95984"}, "otu272178": {"^ot:originalLabel": "Sepedonium chrysospermum S167", "^ot:ottId": 915766, "^ot:ottTaxonName": "Hypomyces chrysospermus", "^ot:treebaseOTUId": "Tl95985"}, "otu272179": {"^ot:originalLabel": "Sepedonium microspermum S161", "^ot:ottId": 320206, "^ot:ottTaxonName": "Hypomyces microspermus", "^ot:treebaseOTUId": "Tl95986"}, "otu272180": {"^ot:originalLabel": "Sepedonium chrysospermum S82", "^ot:ottId": 915766, "^ot:ottTaxonName": "Hypomyces chrysospermus", "^ot:treebaseOTUId": "Tl95987"}, "otu272181": {"^ot:originalLabel": "Sepedonium laevigatum S182", "^ot:ottId": 264480, "^ot:ottTaxonName": "Sepedonium laevigatum", "^ot:treebaseOTUId": "Tl95988"}, "otu272182": {"^ot:originalLabel": "Sepedonium chrysospermum S66", "^ot:ottId": 915766, "^ot:ottTaxonName": "Hypomyces chrysospermus", "^ot:treebaseOTUId": "Tl95989"}, "otu272183": {"^ot:originalLabel": "Sepedonium chrysospermum S39", "^ot:ottId": 915766, "^ot:ottTaxonName": "Hypomyces chrysospermus", "^ot:treebaseOTUId": "Tl95990"}, "otu272184": {"^ot:originalLabel": "Sepedonium laevigatum S88", "^ot:ottId": 264480, "^ot:ottTaxonName": "Sepedonium laevigatum", "^ot:treebaseOTUId": "Tl95991"}, "otu272185": {"^ot:originalLabel": "Sepedonium microspermum S156", "^ot:ottId": 320206, "^ot:ottTaxonName": "Hypomyces microspermus", "^ot:treebaseOTUId": "Tl95992"}, "otu272186": {"^ot:originalLabel": "Cladobotryum varium", "^ot:ottId": 359505, "^ot:ottTaxonName": "Hypomyces aurantius", "^ot:treebaseOTUId": "Tl95993"}, "otu272187": {"^ot:originalLabel": "Sepedonium ampullosporum S49", "^ot:ottId": 889066, "^ot:ottTaxonName": "Sepedonium ampullosporum", "^ot:treebaseOTUId": "Tl95994"}, "otu272188": {"^ot:originalLabel": "Sepedonium chalcipori S46", "^ot:ottId": 264477, "^ot:ottTaxonName": "Sepedonium chalcipori", "^ot:treebaseOTUId": "Tl95995"}}}}, "treesById": {"trees1727": {"@otus": "otus1727", "^ot:treeElementOrder": ["tree3475"], "treeById": {"tree3475": {"@label": "NJ, ITS", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:changesCount", "^ot:branchLengthTimeUnit": "Myr", "^ot:curatedType": "Neighbor-joining ", "^ot:inGroupClade": "node675115", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:rootNodeId": "node675114", "^ot:specifiedRoot": "node675114", "^ot:tag": ["ITS"], "^ot:unrootedTree": false, "edgeBySourceId": {"node675114": {"edge675115": {"@source": "node675114", "@target": "node675115"}, "edge675193": {"@source": "node675114", "@target": "node675193"}}, "node675115": {"edge675116": {"@source": "node675115", "@target": "node675116"}, "edge675190": {"@source": "node675115", "@target": "node675190"}}, "node675116": {"edge675117": {"@source": "node675116", "@target": "node675117"}, "edge675182": {"@source": "node675116", "@target": "node675182"}}, "node675117": {"edge675118": {"@source": "node675117", "@target": "node675118"}, "edge675161": {"@source": "node675117", "@target": "node675161"}}, "node675118": {"edge675119": {"@source": "node675118", "@target": "node675119"}, "edge675155": {"@source": "node675118", "@target": "node675155"}}, "node675119": {"edge675120": {"@source": "node675119", "@target": "node675120"}, "edge675138": {"@source": "node675119", "@target": "node675138"}}, "node675120": {"edge675121": {"@source": "node675120", "@target": "node675121"}, "edge675134": {"@source": "node675120", "@target": "node675134"}}, "node675121": {"edge675122": {"@source": "node675121", "@target": "node675122"}, "edge675123": {"@source": "node675121", "@target": "node675123"}, "edge675124": {"@source": "node675121", "@target": "node675124"}, "edge675125": {"@source": "node675121", "@target": "node675125"}, "edge675126": {"@source": "node675121", "@target": "node675126"}, "edge675127": {"@source": "node675121", "@target": "node675127"}, "edge675128": {"@source": "node675121", "@target": "node675128"}, "edge675129": {"@source": "node675121", "@target": "node675129"}, "edge675130": {"@source": "node675121", "@target": "node675130"}, "edge675131": {"@source": "node675121", "@target": "node675131"}, "edge675132": {"@source": "node675121", "@target": "node675132"}, "edge675133": {"@source": "node675121", "@target": "node675133"}}, "node675134": {"edge675135": {"@source": "node675134", "@target": "node675135"}, "edge675136": {"@source": "node675134", "@target": "node675136"}, "edge675137": {"@source": "node675134", "@target": "node675137"}}, "node675138": {"edge675139": {"@source": "node675138", "@target": "node675139"}, "edge675150": {"@source": "node675138", "@target": "node675150"}}, "node675139": {"edge675140": {"@source": "node675139", "@target": "node675140"}, "edge675147": {"@source": "node675139", "@target": "node675147"}}, "node675140": {"edge675141": {"@source": "node675140", "@target": "node675141"}, "edge675146": {"@source": "node675140", "@target": "node675146"}}, "node675141": {"edge675142": {"@source": "node675141", "@target": "node675142"}, "edge675143": {"@source": "node675141", "@target": "node675143"}, "edge675144": {"@source": "node675141", "@target": "node675144"}, "edge675145": {"@source": "node675141", "@target": "node675145"}}, "node675147": {"edge675148": {"@source": "node675147", "@target": "node675148"}, "edge675149": {"@source": "node675147", "@target": "node675149"}}, "node675150": {"edge675151": {"@source": "node675150", "@target": "node675151"}, "edge675154": {"@source": "node675150", "@target": "node675154"}}, "node675151": {"edge675152": {"@source": "node675151", "@target": "node675152"}, "edge675153": {"@source": "node675151", "@target": "node675153"}}, "node675155": {"edge675156": {"@source": "node675155", "@target": "node675156"}, "edge675157": {"@source": "node675155", "@target": "node675157"}, "edge675158": {"@source": "node675155", "@target": "node675158"}, "edge675159": {"@source": "node675155", "@target": "node675159"}, "edge675160": {"@source": "node675155", "@target": "node675160"}}, "node675161": {"edge675162": {"@source": "node675161", "@target": "node675162"}, "edge675179": {"@source": "node675161", "@target": "node675179"}}, "node675162": {"edge675163": {"@source": "node675162", "@target": "node675163"}, "edge675176": {"@source": "node675162", "@target": "node675176"}}, "node675163": {"edge675164": {"@source": "node675163", "@target": "node675164"}, "edge675165": {"@source": "node675163", "@target": "node675165"}, "edge675166": {"@source": "node675163", "@target": "node675166"}, "edge675167": {"@source": "node675163", "@target": "node675167"}, "edge675168": {"@source": "node675163", "@target": "node675168"}, "edge675169": {"@source": "node675163", "@target": "node675169"}, "edge675170": {"@source": "node675163", "@target": "node675170"}, "edge675171": {"@source": "node675163", "@target": "node675171"}, "edge675172": {"@source": "node675163", "@target": "node675172"}, "edge675173": {"@source": "node675163", "@target": "node675173"}, "edge675174": {"@source": "node675163", "@target": "node675174"}, "edge675175": {"@source": "node675163", "@target": "node675175"}}, "node675176": {"edge675177": {"@source": "node675176", "@target": "node675177"}, "edge675178": {"@source": "node675176", "@target": "node675178"}}, "node675179": {"edge675180": {"@source": "node675179", "@target": "node675180"}, "edge675181": {"@source": "node675179", "@target": "node675181"}}, "node675182": {"edge675183": {"@source": "node675182", "@target": "node675183"}, "edge675187": {"@source": "node675182", "@target": "node675187"}}, "node675183": {"edge675184": {"@source": "node675183", "@target": "node675184"}, "edge675185": {"@source": "node675183", "@target": "node675185"}, "edge675186": {"@source": "node675183", "@target": "node675186"}}, "node675187": {"edge675188": {"@source": "node675187", "@target": "node675188"}, "edge675189": {"@source": "node675187", "@target": "node675189"}}, "node675190": {"edge675191": {"@source": "node675190", "@target": "node675191"}, "edge675192": {"@source": "node675190", "@target": "node675192"}}}, "nodeById": {"node675114": {"@root": true}, "node675115": {}, "node675116": {}, "node675117": {}, "node675118": {}, "node675119": {}, "node675120": {}, "node675121": {}, "node675122": {"@otu": "otu272165", "^ot:isTaxonExemplar": false}, "node675123": {"@otu": "otu272154", "^ot:isTaxonExemplar": false}, "node675124": {"@otu": "otu272180", "^ot:isTaxonExemplar": false}, "node675125": {"@otu": "otu272166", "^ot:isTaxonExemplar": false}, "node675126": {"@otu": "otu272178", "^ot:isTaxonExemplar": false}, "node675127": {"@otu": "otu272163", "^ot:isTaxonExemplar": false}, "node675128": {"@otu": "otu272167", "^ot:isTaxonExemplar": false}, "node675129": {"@otu": "otu272152", "^ot:isTaxonExemplar": false}, "node675130": {"@otu": "otu272183", "^ot:isTaxonExemplar": false}, "node675131": {"@otu": "otu272137", "^ot:isTaxonExemplar": false}, "node675132": {"@otu": "otu272140", "^ot:isTaxonExemplar": false}, "node675133": {"@otu": "otu272177", "^ot:isTaxonExemplar": false}, "node675134": {}, "node675135": {"@otu": "otu272182", "^ot:isTaxonExemplar": false}, "node675136": {"@otu": "otu272155", "^ot:isTaxonExemplar": false}, "node675137": {"@otu": "otu272146", "^ot:isTaxonExemplar": true}, "node675138": {}, "node675139": {}, "node675140": {}, "node675141": {}, "node675142": {"@otu": "otu272142", "^ot:isTaxonExemplar": false}, "node675143": {"@otu": "otu272139", "^ot:isTaxonExemplar": false}, "node675144": {"@otu": "otu272179", "^ot:isTaxonExemplar": false}, "node675145": {"@otu": "otu272147", "^ot:isTaxonExemplar": false}, "node675146": {"@otu": "otu272136", "^ot:isTaxonExemplar": false}, "node675147": {}, "node675148": {"@otu": "otu272174", "^ot:isTaxonExemplar": false}, "node675149": {"@otu": "otu272148", "^ot:isTaxonExemplar": false}, "node675150": {}, "node675151": {}, "node675152": {"@otu": "otu272150", "^ot:isTaxonExemplar": true}, "node675153": {"@otu": "otu272185", "^ot:isTaxonExemplar": false}, "node675154": {"@otu": "otu272156", "^ot:isTaxonExemplar": false}, "node675155": {}, "node675156": {"@otu": "otu272160", "^ot:isTaxonExemplar": true}, "node675157": {"@otu": "otu272187", "^ot:isTaxonExemplar": false}, "node675158": {"@otu": "otu272168", "^ot:isTaxonExemplar": false}, "node675159": {"@otu": "otu272175", "^ot:isTaxonExemplar": false}, "node675160": {"@otu": "otu272169", "^ot:isTaxonExemplar": false}, "node675161": {}, "node675162": {}, "node675163": {}, "node675164": {"@otu": "otu272138", "^ot:isTaxonExemplar": true}, "node675165": {"@otu": "otu272176", "^ot:isTaxonExemplar": false}, "node675166": {"@otu": "otu272170", "^ot:isTaxonExemplar": false}, "node675167": {"@otu": "otu272135", "^ot:isTaxonExemplar": false}, "node675168": {"@otu": "otu272153", "^ot:isTaxonExemplar": false}, "node675169": {"@otu": "otu272181", "^ot:isTaxonExemplar": false}, "node675170": {"@otu": "otu272184", "^ot:isTaxonExemplar": false}, "node675171": {"@otu": "otu272171", "^ot:isTaxonExemplar": false}, "node675172": {"@otu": "otu272143", "^ot:isTaxonExemplar": false}, "node675173": {"@otu": "otu272145", "^ot:isTaxonExemplar": false}, "node675174": {"@otu": "otu272157", "^ot:isTaxonExemplar": false}, "node675175": {"@otu": "otu272161", "^ot:isTaxonExemplar": false}, "node675176": {}, "node675177": {"@otu": "otu272144", "^ot:isTaxonExemplar": true}, "node675178": {"@otu": "otu272159", "^ot:isTaxonExemplar": false}, "node675179": {}, "node675180": {"@otu": "otu272141", "^ot:isTaxonExemplar": true}, "node675181": {"@otu": "otu272151", "^ot:isTaxonExemplar": false}, "node675182": {}, "node675183": {}, "node675184": {"@otu": "otu272158", "^ot:isTaxonExemplar": false}, "node675185": {"@otu": "otu272172", "^ot:isTaxonExemplar": false}, "node675186": {"@otu": "otu272164", "^ot:isTaxonExemplar": true}, "node675187": {}, "node675188": {"@otu": "otu272188", "^ot:isTaxonExemplar": false}, "node675189": {"@otu": "otu272162", "^ot:isTaxonExemplar": false}, "node675190": {}, "node675191": {"@otu": "otu272173"}, "node675192": {"@otu": "otu272149"}, "node675193": {"@otu": "otu272186"}}}}}}}}, "branch2sha": {"master": "1bbbe21bdd9a32ef81abeb3f038a977fdc0e8e7b"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "51e23a3ffcebea56ae0473609349fe2706cfde0d", "author_name": "Romina Gazis", "author_email": "gazisromina@gmail.com", "date": "Wed, 30 Sep 2015 16:36:29 +0000", "date_ISO_8601": "2015-09-30 16:36:29 +0000", "relative_date": "11 years ago", "message_subject": "Update Study #pg_1727 via OpenTree API"}, {"id": "d33fb39501605772a074dffc82affa5344ea9a94", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Wed, 11 Jun 2014 22:18:34 -0500", "date_ISO_8601": "2014-06-11 22:18:34 -0500", "relative_date": "12 years ago", "message_subject": "corrected study ids"}, {"id": "593d6fbab385716dc0a12f3fc95133e8b7479b37", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 29 Apr 2014 20:05:19 -0500", "date_ISO_8601": "2014-04-29 20:05:19 -0500", "relative_date": "12 years ago", "message_subject": "initial commit with phylografter files from 29 Apr, 2014"}]}