{"sha": "4995ac940feac5e5f4a88286e30b17d05b47a51a", "data": {"nexml": {"@generator": "Phylografter nexml-json exporter", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "validator of NexSON constraints as well as constraints that would allow a study to be imported into the Open Tree of Life's phylogenetic synthesis tools", "@id": "peyotl-validator", "@name": "validate_ot_nexson.py", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": ["--embed", "--agent-only"], "otherProperty": [{"name": "pythonVersion", "value": "2.7.5+"}, {"name": "pythonImplementation", "value": "CPython"}]}}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0"}]}, "^ot:annotationEvents": {"annotation": [{"@dateCreated": "2014-10-06T22:21:12.294Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"searchContext": {"$": "All life"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}]}, "useFuzzyMatching": false}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2014-10-06T22:21:12.294Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": []}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree4038", "@treesID": "trees1974", "@treeID": "tree4038"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree4039", "@treesID": "trees1974", "@treeID": "tree4039"}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": ["tree4038", "tree4039"], "^ot:comment": "", "^ot:curatorName": ["bryan drew", "Jonathan A Rees"], "^ot:dataDeposit": {"@href": ""}, "^ot:focalClade": 904376, "^ot:focalCladeOTTTaxonName": "Polygonaceae", "^ot:messages": {"message": []}, "^ot:notIntendedForSynthesis": false, "^ot:otusElementOrder": ["otus1974"], "^ot:studyId": "pg_1974", "^ot:studyPublication": {"@href": "http://dx.doi.org/10.1016/j.ympev.2012.01.002"}, "^ot:studyPublicationReference": "Sun, Y. [et al. 2012], Wang, A., Wan, D., Wang, Q., & Liu, J. 2012. Rapid radiation of Rheum (Polygonaceae) and parallel evolution of morphological traits. Mol. Phyl. Evol. 63: 150-158.", "^ot:studyYear": 2012, "^ot:tag": [], "^ot:treesElementOrder": ["trees1974"], "otusById": {"otus1974": {"otuById": {"otu296852": {"^ot:originalLabel": "Bistorta viviparum", "^ot:ottId": 91303, "^ot:ottTaxonName": "Bistorta vivipara"}, "otu296853": {"^ot:originalLabel": "Koenigia islandica", "^ot:ottId": 1031524, "^ot:ottTaxonName": "Koenigia islandica"}, "otu296854": {"^ot:originalLabel": "Polygonum hookeri", "^ot:ottId": 257856, "^ot:ottTaxonName": "Aconogonon hookeri"}, "otu296855": {"^ot:originalLabel": "Fagopyrum esculentum", "^ot:ottId": 904381, "^ot:ottTaxonName": "Fagopyrum esculentum"}, "otu296856": {"^ot:originalLabel": "Calligonum rubicundum", "^ot:ottId": 257860, "^ot:ottTaxonName": "Calligonum rubicundum"}, "otu296857": {"^ot:originalLabel": "Calligonum arborescens", "^ot:ottId": 592811, "^ot:ottTaxonName": "Calligonum arborescens"}, "otu296858": {"^ot:originalLabel": "Rheum rhaponticum", "^ot:ottId": 287577, "^ot:ottTaxonName": "Rheum rhaponticum"}, "otu296859": {"^ot:originalLabel": "Rheum franzenbachii", "^ot:ottId": 845661, "^ot:ottTaxonName": "Rheum franzenbachii"}, "otu296860": {"^ot:originalLabel": "Rheum hotaoense", "^ot:ottId": 838940, "^ot:ottTaxonName": "Rheum hotaoense"}, "otu296861": {"^ot:originalLabel": "Rheum altaicum", "^ot:ottId": 257863, "^ot:ottTaxonName": "Rheum altaicum"}, "otu296862": {"^ot:originalLabel": "Rheum compact", "^ot:ottId": 838939, "^ot:ottTaxonName": "Rheum compactum"}, "otu296863": {"^ot:originalLabel": "Rheum nanum", "^ot:ottId": 838931, "^ot:ottTaxonName": "Rheum nanum"}, "otu296864": {"^ot:originalLabel": "Rheum wittrockii", "^ot:ottId": 213390, "^ot:ottTaxonName": "Rheum wittrockii"}, "otu296865": {"^ot:originalLabel": "Rheum tanguti", "^ot:ottId": 213382, "^ot:ottTaxonName": "Rheum tanguticum"}, "otu296866": {"^ot:originalLabel": "Rheum palmatum", "^ot:ottId": 213379, "^ot:ottTaxonName": "Rheum palmatum"}, "otu296867": {"^ot:originalLabel": "Rheum acuminatum", "^ot:ottId": 888355, "^ot:ottTaxonName": "Rheum acuminatum"}, "otu296868": {"^ot:originalLabel": "Rheum officin", "^ot:ottId": 173973, "^ot:ottTaxonName": "Rheum officinale"}, "otu296869": {"^ot:originalLabel": "Rheum alexandrae", "^ot:ottId": 514115, "^ot:ottTaxonName": "Rheum alexandrae"}, "otu296870": {"^ot:originalLabel": "Rheum alpinum", "^ot:ottId": 861602, "^ot:ottTaxonName": "Rheum sp. Liu rh6216"}, "otu296871": {"^ot:originalLabel": "Rheum lhasaense", "^ot:ottId": 900120, "^ot:ottTaxonName": "Rheum lhasaense"}, "otu296872": {"^ot:originalLabel": "Rheum likiangense", "^ot:ottId": 838930, "^ot:ottTaxonName": "Rheum likiangense"}, "otu296873": {"^ot:originalLabel": "Rheum webbian", "^ot:ottId": 514107, "^ot:ottTaxonName": "Rheum webbianum"}, "otu296874": {"^ot:originalLabel": "Rheum tibetic", "^ot:ottId": 514105, "^ot:ottTaxonName": "Rheum tibeticum"}, "otu296875": {"^ot:originalLabel": "Rheum austral", "^ot:ottId": 514108, "^ot:ottTaxonName": "Rheum australe"}, "otu296876": {"^ot:originalLabel": "Rheum macroph", "^ot:ottId": 257862, "^ot:ottTaxonName": "Rheum sp. Liu rh6265"}, "otu296877": {"^ot:originalLabel": "Rheum nobile", "^ot:ottId": 143985, "^ot:ottTaxonName": "Rheum nobile"}, "otu296878": {"^ot:originalLabel": "Rheum spicifo", "^ot:ottId": 845650, "^ot:ottTaxonName": "Rheum spiciforme"}, "otu296879": {"^ot:originalLabel": "Rheum rhizostachym", "^ot:ottId": 1040624, "^ot:ottTaxonName": "Rheum rhizostachyum"}, "otu296880": {"^ot:originalLabel": "Rheum rhomboi", "^ot:ottId": 257867, "^ot:ottTaxonName": "Rheum rhomboideum"}, "otu296881": {"^ot:originalLabel": "Rheum przewalskyi", "^ot:ottId": 213378, "^ot:ottTaxonName": "Rheum przewalskyi"}, "otu296882": {"^ot:originalLabel": "Rheum moorcroftianum", "^ot:ottId": 514118, "^ot:ottTaxonName": "Rheum moorcroftianum"}, "otu296883": {"^ot:originalLabel": "Rheum reticul", "^ot:ottId": 213387, "^ot:ottTaxonName": "Rheum reticulatum"}, "otu296884": {"^ot:originalLabel": "Rheum pumilum", "^ot:ottId": 213377, "^ot:ottTaxonName": "Rheum pumilum"}, "otu296885": {"^ot:originalLabel": "Rheum kialensse", "^ot:ottId": 845660, "^ot:ottTaxonName": "Rheum kialense"}, "otu296886": {"^ot:originalLabel": "Rheum globulosum", "^ot:ottId": 503649, "^ot:ottTaxonName": "Rheum globulosum"}, "otu296887": {"^ot:originalLabel": "Rheum forrestii", "^ot:ottId": 503737, "^ot:ottTaxonName": "Rheum forrestii"}, "otu296888": {"^ot:originalLabel": "Rheum sublancelatum", "^ot:ottId": 213386, "^ot:ottTaxonName": "Rheum sublanceolatum"}, "otu296889": {"^ot:originalLabel": "Rheum delavay", "^ot:ottId": 888357, "^ot:ottTaxonName": "Rheum delavayi"}, "otu296890": {"^ot:originalLabel": "Rheum tataricum", "^ot:ottId": 732005, "^ot:ottTaxonName": "Rheum tataricum"}, "otu296891": {"^ot:originalLabel": "Rheum palaestinum", "^ot:ottId": 888352, "^ot:ottTaxonName": "Rheum palaestinum"}, "otu296892": {"^ot:originalLabel": "Oxyria sinensis", "^ot:ottId": 666564, "^ot:ottTaxonName": "Oxyria sinensis"}, "otu296893": {"^ot:originalLabel": "Oxyria digyna", "^ot:ottId": 514120, "^ot:ottTaxonName": "Oxyria digyna"}, "otu296894": {"^ot:originalLabel": "Rumex crispus", "^ot:ottId": 516846, "^ot:ottTaxonName": "Rumex crispus"}, "otu296895": {"^ot:originalLabel": "Fallopia aubertii", "^ot:ottId": 258412, "^ot:ottTaxonName": "Fallopia aubertii"}, "otu296896": {"^ot:originalLabel": "Atraphaxis spinosa", "^ot:ottId": 310783, "^ot:ottTaxonName": "Atraphaxis spinosa"}, "otu296897": {"^ot:originalLabel": "Atraphaxis pungens", "^ot:ottId": 257852, "^ot:ottTaxonName": "Atraphaxis pungens"}, "otu296898": {"^ot:originalLabel": "Limonium sinense", "^ot:ottId": 244739, "^ot:ottTaxonName": "Limonium sinense"}, "otu296899": {"^ot:originalLabel": "Bistorta vivipara", "^ot:ottId": 91303, "^ot:ottTaxonName": "Bistorta vivipara"}, "otu296900": {"^ot:originalLabel": "R lhasaense", "^ot:ottId": 900120, "^ot:ottTaxonName": "Rheum lhasaense"}, "otu296901": {"^ot:originalLabel": "R altaicum", "^ot:ottId": 257863, "^ot:ottTaxonName": "Rheum altaicum"}, "otu296902": {"^ot:originalLabel": "R compactum", "^ot:ottId": 838939, "^ot:ottTaxonName": "Rheum compactum"}, "otu296903": {"^ot:originalLabel": "R hotaoense", "^ot:ottId": 838940, "^ot:ottTaxonName": "Rheum hotaoense"}, "otu296904": {"^ot:originalLabel": "R franzenbachi", "^ot:ottId": 845661, "^ot:ottTaxonName": "Rheum franzenbachii"}, "otu296905": {"^ot:originalLabel": "R rhaponticum", "^ot:ottId": 287577, "^ot:ottTaxonName": "Rheum rhaponticum"}, "otu296906": {"^ot:originalLabel": "R wittrockii", "^ot:ottId": 213390, "^ot:ottTaxonName": "Rheum wittrockii"}, "otu296907": {"^ot:originalLabel": "R nanum", "^ot:ottId": 838931, "^ot:ottTaxonName": "Rheum nanum"}, "otu296908": {"^ot:originalLabel": "R officinale", "^ot:ottId": 173973, "^ot:ottTaxonName": "Rheum officinale"}, "otu296909": {"^ot:originalLabel": "R acuminatum", "^ot:ottId": 888355, "^ot:ottTaxonName": "Rheum acuminatum"}, "otu296910": {"^ot:originalLabel": "R palmatum", "^ot:ottId": 213379, "^ot:ottTaxonName": "Rheum palmatum"}, "otu296911": {"^ot:originalLabel": "R tanguticum", "^ot:ottId": 213382, "^ot:ottTaxonName": "Rheum tanguticum"}, "otu296912": {"^ot:originalLabel": "R alexandrae", "^ot:ottId": 514115, "^ot:ottTaxonName": "Rheum alexandrae"}, "otu296913": {"^ot:originalLabel": "R alpinum", "^ot:ottId": 861602, "^ot:ottTaxonName": "Rheum sp. Liu rh6216"}, "otu296914": {"^ot:originalLabel": "R likiangense", "^ot:ottId": 838930, "^ot:ottTaxonName": "Rheum likiangense"}, "otu296915": {"^ot:originalLabel": "R macrophyllum", "^ot:ottId": 257862, "^ot:ottTaxonName": "Rheum sp. Liu rh6265"}, "otu296916": {"^ot:originalLabel": "R australe", "^ot:ottId": 514108, "^ot:ottTaxonName": "Rheum australe"}, "otu296917": {"^ot:originalLabel": "R tibeticum", "^ot:ottId": 514105, "^ot:ottTaxonName": "Rheum tibeticum"}, "otu296918": {"^ot:originalLabel": "R webbianum", "^ot:ottId": 514107, "^ot:ottTaxonName": "Rheum webbianum"}, "otu296919": {"^ot:originalLabel": "R reticulatum", "^ot:ottId": 213387, "^ot:ottTaxonName": "Rheum reticulatum"}, "otu296920": {"^ot:originalLabel": "R moorcroftian", "^ot:ottId": 514118, "^ot:ottTaxonName": "Rheum moorcroftianum"}, "otu296921": {"^ot:originalLabel": "R przewalskyi", "^ot:ottId": 213378, "^ot:ottTaxonName": "Rheum przewalskyi"}, "otu296922": {"^ot:originalLabel": "R rhomboideum", "^ot:ottId": 257867, "^ot:ottTaxonName": "Rheum rhomboideum"}, "otu296923": {"^ot:originalLabel": "R rhizostachyu", "^ot:ottId": 1040624, "^ot:ottTaxonName": "Rheum rhizostachyum"}, "otu296924": {"^ot:originalLabel": "R spiciforme", "^ot:ottId": 845650, "^ot:ottTaxonName": "Rheum spiciforme"}, "otu296925": {"^ot:originalLabel": "R nobile", "^ot:ottId": 143985, "^ot:ottTaxonName": "Rheum nobile"}, "otu296926": {"^ot:originalLabel": "R delavay", "^ot:ottId": 888357, "^ot:ottTaxonName": "Rheum delavayi"}, "otu296927": {"^ot:originalLabel": "R globulosum", "^ot:ottId": 503649, "^ot:ottTaxonName": "Rheum globulosum"}, "otu296928": {"^ot:originalLabel": "R kialense", "^ot:ottId": 845660, "^ot:ottTaxonName": "Rheum kialense"}, "otu296929": {"^ot:originalLabel": "R forrestii", "^ot:ottId": 503737, "^ot:ottTaxonName": "Rheum forrestii"}, "otu296930": {"^ot:originalLabel": "R pumilum", "^ot:ottId": 213377, "^ot:ottTaxonName": "Rheum pumilum"}, "otu296931": {"^ot:originalLabel": "R sublanceolat", "^ot:ottId": 213386, "^ot:ottTaxonName": "Rheum sublanceolatum"}, "otu296932": {"^ot:originalLabel": "R tataricum", "^ot:ottId": 732005, "^ot:ottTaxonName": "Rheum tataricum"}, "otu296933": {"^ot:originalLabel": "R palaestinum", "^ot:ottId": 888352, "^ot:ottTaxonName": "Rheum palaestinum"}, "otu296934": {"^ot:originalLabel": "O digyna", "^ot:ottId": 514120, "^ot:ottTaxonName": "Oxyria digyna"}, "otu296935": {"^ot:originalLabel": "O sinensis", "^ot:ottId": 666564, "^ot:ottTaxonName": "Oxyria sinensis"}, "otu296936": {"^ot:originalLabel": "A pungens", "^ot:ottId": 257852, "^ot:ottTaxonName": "Atraphaxis pungens"}, "otu296937": {"^ot:originalLabel": "A spinosa", "^ot:ottId": 310783, "^ot:ottTaxonName": "Atraphaxis spinosa"}, "otu296938": {"^ot:originalLabel": "C arbores", "^ot:ottId": 592811, "^ot:ottTaxonName": "Calligonum arborescens"}, "otu296939": {"^ot:originalLabel": "C rubicun", "^ot:ottId": 257860, "^ot:ottTaxonName": "Calligonum rubicundum"}, "otu296940": {"^ot:originalLabel": "Fagopyrum esculent", "^ot:ottId": 904381, "^ot:ottTaxonName": "Fagopyrum esculentum"}}}}, "treesById": {"trees1974": {"@otus": "otus1974", "^ot:treeElementOrder": ["tree4038", "tree4039"], "treeById": {"tree4038": {"@label": "Untitled (tree4038)", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:substitutionCount", "^ot:branchLengthTimeUnit": "", "^ot:curatedType": "ml best tree", "^ot:inGroupClade": "node752745", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:rootNodeId": "node752744", "^ot:specifiedRoot": "node752744", "^ot:tag": [], "^ot:unrootedTree": false, "edgeBySourceId": {"node752744": {"edge752745": {"@length": 0.08418708445, "@source": "node752744", "@target": "node752745"}, "edge752836": {"@length": 0.1683741689, "@source": "node752744", "@target": "node752836"}}, "node752745": {"edge752746": {"@length": 0.022856944000000018, "@source": "node752745", "@target": "node752746"}, "edge752751": {"@length": 0.0032385247999999756, "@source": "node752745", "@target": "node752751"}}, "node752746": {"edge752747": {"@length": 0.042885608599999986, "@source": "node752746", "@target": "node752747"}, "edge752748": {"@length": 0.0223366713, "@source": "node752746", "@target": "node752748"}}, "node752748": {"edge752749": {"@length": 0.0702116558, "@source": "node752748", "@target": "node752749"}, "edge752750": {"@length": 0.019725241199999993, "@source": "node752748", "@target": "node752750"}}, "node752751": {"edge752752": {"@length": 0.059167698599999985, "@source": "node752751", "@target": "node752752"}, "edge752753": {"@length": 0.006085079700000023, "@source": "node752751", "@target": "node752753"}}, "node752753": {"edge752754": {"@length": 0.022936923200000014, "@source": "node752753", "@target": "node752754"}, "edge752757": {"@length": 0.0020678582, "@source": "node752753", "@target": "node752757"}}, "node752754": {"edge752755": {"@length": 0.0014378424999999806, "@source": "node752754", "@target": "node752755"}, "edge752756": {"@length": 0.00143839409999999, "@source": "node752754", "@target": "node752756"}}, "node752757": {"edge752758": {"@length": 0.009877432599999986, "@source": "node752757", "@target": "node752758"}, "edge752831": {"@length": 0.0141850835, "@source": "node752757", "@target": "node752831"}}, "node752758": {"edge752759": {"@length": 0.0019958956000000194, "@source": "node752758", "@target": "node752759"}, "edge752830": {"@length": 0.038519324700000024, "@source": "node752758", "@target": "node752830"}}, "node752759": {"edge752760": {"@length": 0.011939647999999997, "@source": "node752759", "@target": "node752760"}, "edge752827": {"@length": 0.012411606500000005, "@source": "node752759", "@target": "node752827"}}, "node752760": {"edge752761": {"@length": 0.0003381547000000096, "@source": "node752760", "@target": "node752761"}, "edge752826": {"@length": 0.006358641899999989, "@source": "node752760", "@target": "node752826"}}, "node752761": {"edge752762": {"@length": 0.0003411242999999953, "@source": "node752761", "@target": "node752762"}, "edge752825": {"@length": 0.005721234500000005, "@source": "node752761", "@target": "node752825"}}, "node752762": {"edge752763": {"@length": 0.0008177729999999661, "@source": "node752762", "@target": "node752763"}, "edge752800": {"@length": 0.0001616798999999891, "@source": "node752762", "@target": "node752800"}}, "node752763": {"edge752764": {"@length": 0.0016154851000000081, "@source": "node752763", "@target": "node752764"}, "edge752793": {"@length": 0.0009768027000000012, "@source": "node752763", "@target": "node752793"}}, "node752764": {"edge752765": {"@length": 0.0006351733999999942, "@source": "node752764", "@target": "node752765"}, "edge752792": {"@length": 0.0023998140999999806, "@source": "node752764", "@target": "node752792"}}, "node752765": {"edge752766": {"@length": 0.0003558435000000082, "@source": "node752765", "@target": "node752766"}, "edge752791": {"@length": 0.0028478613999999847, "@source": "node752765", "@target": "node752791"}}, "node752766": {"edge752767": {"@length": 0.00015910479999997618, "@source": "node752766", "@target": "node752767"}, "edge752790": {"@length": 0.0022379519999999875, "@source": "node752766", "@target": "node752790"}}, "node752767": {"edge752768": {"@length": 0.00011841960000003038, "@source": "node752767", "@target": "node752768"}, "edge752789": {"@length": 0.0027181577000000012, "@source": "node752767", "@target": "node752789"}}, "node752768": {"edge752769": {"@length": 0.00036457519999999466, "@source": "node752768", "@target": "node752769"}, "edge752782": {"@length": 0.0014480505999999727, "@source": "node752768", "@target": "node752782"}}, "node752769": {"edge752770": {"@length": 0.0001612011999999885, "@source": "node752769", "@target": "node752770"}, "edge752779": {"@length": 0.0006360423999999809, "@source": "node752769", "@target": "node752779"}}, "node752770": {"edge752771": {"@length": 8.299999992855689e-09, "@source": "node752770", "@target": "node752771"}, "edge752778": {"@length": 0.00047833280000000866, "@source": "node752770", "@target": "node752778"}}, "node752771": {"edge752772": {"@length": 0.0007976507999999938, "@source": "node752771", "@target": "node752772"}, "edge752773": {"@length": 7.800000006996655e-09, "@source": "node752771", "@target": "node752773"}}, "node752773": {"edge752774": {"@length": 0.0006377317000000049, "@source": "node752773", "@target": "node752774"}, "edge752777": {"@length": 0.0006383444000000182, "@source": "node752773", "@target": "node752777"}}, "node752774": {"edge752775": {"@length": 1.000000082740371e-10, "@source": "node752774", "@target": "node752775"}, "edge752776": {"@length": 1.000000082740371e-10, "@source": "node752774", "@target": "node752776"}}, "node752779": {"edge752780": {"@length": 0.0019189447999999887, "@source": "node752779", "@target": "node752780"}, "edge752781": {"@length": 0.0006392960000000114, "@source": "node752779", "@target": "node752781"}}, "node752782": {"edge752783": {"@length": 0.00036248440000002935, "@source": "node752782", "@target": "node752783"}, "edge752788": {"@length": 0.0018622952000000303, "@source": "node752782", "@target": "node752788"}}, "node752783": {"edge752784": {"@length": 0.0017488573999999701, "@source": "node752783", "@target": "node752784"}, "edge752787": {"@length": 0.002573610599999998, "@source": "node752783", "@target": "node752787"}}, "node752784": {"edge752785": {"@length": 0.0006403432000000042, "@source": "node752784", "@target": "node752785"}, "edge752786": {"@length": 0.000158881700000002, "@source": "node752784", "@target": "node752786"}}, "node752793": {"edge752794": {"@length": 0.002637094700000009, "@source": "node752793", "@target": "node752794"}, "edge752795": {"@length": 0.0009189045000000118, "@source": "node752793", "@target": "node752795"}}, "node752795": {"edge752796": {"@length": 0.0011160223999999996, "@source": "node752795", "@target": "node752796"}, "edge752799": {"@length": 0.000911985799999987, "@source": "node752795", "@target": "node752799"}}, "node752796": {"edge752797": {"@length": 0.00116686760000001, "@source": "node752796", "@target": "node752797"}, "edge752798": {"@length": 0.0004305420999999865, "@source": "node752796", "@target": "node752798"}}, "node752800": {"edge752801": {"@length": 0.0021229020999999904, "@source": "node752800", "@target": "node752801"}, "edge752814": {"@length": 0.003304185799999998, "@source": "node752800", "@target": "node752814"}}, "node752801": {"edge752802": {"@length": 0.004669371600000027, "@source": "node752801", "@target": "node752802"}, "edge752803": {"@length": 0.0014098878000000092, "@source": "node752801", "@target": "node752803"}}, "node752803": {"edge752804": {"@length": 0.00034555769999999875, "@source": "node752803", "@target": "node752804"}, "edge752811": {"@length": 0.0009579004999999974, "@source": "node752803", "@target": "node752811"}}, "node752804": {"edge752805": {"@length": 1.9399999995339812e-08, "@source": "node752804", "@target": "node752805"}, "edge752808": {"@length": 0.000159293899999996, "@source": "node752804", "@target": "node752808"}}, "node752805": {"edge752806": {"@length": 0.0001594407999999936, "@source": "node752805", "@target": "node752806"}, "edge752807": {"@length": 0.0003189444000000208, "@source": "node752805", "@target": "node752807"}}, "node752808": {"edge752809": {"@length": 0.000318906400000013, "@source": "node752808", "@target": "node752809"}, "edge752810": {"@length": 0.0001595258999999849, "@source": "node752808", "@target": "node752810"}}, "node752811": {"edge752812": {"@length": 0.00018659739999998814, "@source": "node752811", "@target": "node752812"}, "edge752813": {"@length": 0.0007707841999999854, "@source": "node752811", "@target": "node752813"}}, "node752814": {"edge752815": {"@length": 0.0014406810999999797, "@source": "node752814", "@target": "node752815"}, "edge752824": {"@length": 0.0074662072999999995, "@source": "node752814", "@target": "node752824"}}, "node752815": {"edge752816": {"@length": 0.0006725060000000171, "@source": "node752815", "@target": "node752816"}, "edge752823": {"@length": 0.0038250397000000325, "@source": "node752815", "@target": "node752823"}}, "node752816": {"edge752817": {"@length": 0.0032052677999999946, "@source": "node752816", "@target": "node752817"}, "edge752818": {"@length": 0.0013434625000000033, "@source": "node752816", "@target": "node752818"}}, "node752818": {"edge752819": {"@length": 0.0008050135000000069, "@source": "node752818", "@target": "node752819"}, "edge752822": {"@length": 0.0021662376000000094, "@source": "node752818", "@target": "node752822"}}, "node752819": {"edge752820": {"@length": 0.001854708099999991, "@source": "node752819", "@target": "node752820"}, "edge752821": {"@length": 0.0031198753999999995, "@source": "node752819", "@target": "node752821"}}, "node752827": {"edge752828": {"@length": 0.018232959999999993, "@source": "node752827", "@target": "node752828"}, "edge752829": {"@length": 0.02979444519999999, "@source": "node752827", "@target": "node752829"}}, "node752831": {"edge752832": {"@length": 0.02148345340000002, "@source": "node752831", "@target": "node752832"}, "edge752833": {"@length": 0.0379119584, "@source": "node752831", "@target": "node752833"}}, "node752833": {"edge752834": {"@length": 0.0023525212999999934, "@source": "node752833", "@target": "node752834"}, "edge752835": {"@length": 0.0008516813999999984, "@source": "node752833", "@target": "node752835"}}}, "nodeById": {"node752744": {"@root": true}, "node752745": {}, "node752746": {}, "node752747": {"@otu": "otu296852"}, "node752748": {}, "node752749": {"@otu": "otu296853"}, "node752750": {"@otu": "otu296854"}, "node752751": {}, "node752752": {"@otu": "otu296855"}, "node752753": {}, "node752754": {}, "node752755": {"@otu": "otu296856"}, "node752756": {"@otu": "otu296857"}, "node752757": {}, "node752758": {}, "node752759": {}, "node752760": {}, "node752761": {}, "node752762": {}, "node752763": {}, "node752764": {}, "node752765": {}, "node752766": {}, "node752767": {}, "node752768": {}, "node752769": {}, "node752770": {}, "node752771": {}, "node752772": {"@otu": "otu296858"}, "node752773": {}, "node752774": {}, "node752775": {"@otu": "otu296859"}, "node752776": {"@otu": "otu296860"}, "node752777": {"@otu": "otu296861"}, "node752778": {"@otu": "otu296862"}, "node752779": {}, "node752780": {"@otu": "otu296863"}, "node752781": {"@otu": "otu296864"}, "node752782": {}, "node752783": {}, "node752784": {}, "node752785": {"@otu": "otu296865"}, "node752786": {"@otu": "otu296866"}, "node752787": {"@otu": "otu296867"}, "node752788": {"@otu": "otu296868"}, "node752789": {"@otu": "otu296869"}, "node752790": {"@otu": "otu296870"}, "node752791": {"@otu": "otu296871"}, "node752792": {"@otu": "otu296872"}, "node752793": {}, "node752794": {"@otu": "otu296873"}, "node752795": {}, "node752796": {}, "node752797": {"@otu": "otu296874"}, "node752798": {"@otu": "otu296875"}, "node752799": {"@otu": "otu296876"}, "node752800": {}, "node752801": {}, "node752802": {"@otu": "otu296877"}, "node752803": {}, "node752804": {}, "node752805": {}, "node752806": {"@otu": "otu296878"}, "node752807": {"@otu": "otu296879"}, "node752808": {}, "node752809": {"@otu": "otu296880"}, "node752810": {"@otu": "otu296881"}, "node752811": {}, "node752812": {"@otu": "otu296882"}, "node752813": {"@otu": "otu296883"}, "node752814": {}, "node752815": {}, "node752816": {}, "node752817": {"@otu": "otu296884"}, "node752818": {}, "node752819": {}, "node752820": {"@otu": "otu296885"}, "node752821": {"@otu": "otu296886"}, "node752822": {"@otu": "otu296887"}, "node752823": {"@otu": "otu296888"}, "node752824": {"@otu": "otu296889"}, "node752825": {"@otu": "otu296890"}, "node752826": {"@otu": "otu296891"}, "node752827": {}, "node752828": {"@otu": "otu296892"}, "node752829": {"@otu": "otu296893"}, "node752830": {"@otu": "otu296894"}, "node752831": {}, "node752832": {"@otu": "otu296895"}, "node752833": {}, "node752834": {"@otu": "otu296896"}, "node752835": {"@otu": "otu296897"}, "node752836": {"@otu": "otu296898"}}}, "tree4039": {"@label": "Untitled (tree4039)", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:substitutionCount", "^ot:branchLengthTimeUnit": "", "^ot:curatedType": "bi majority rule consensus tree", "^ot:inGroupClade": "node752847", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:rootNodeId": "node752837", "^ot:specifiedRoot": "node752837", "^ot:tag": [], "^ot:unrootedTree": false, "edgeBySourceId": {"node752837": {"edge752838": {"@length": 0.118262, "@source": "node752837", "@target": "node752838"}, "edge752839": {"@length": 0.016325, "@source": "node752837", "@target": "node752839"}, "edge752844": {"@length": 0.002387, "@source": "node752837", "@target": "node752844"}}, "node752839": {"edge752840": {"@length": 0.015682, "@source": "node752839", "@target": "node752840"}, "edge752843": {"@length": 0.030225, "@source": "node752839", "@target": "node752843"}}, "node752840": {"edge752841": {"@length": 0.013998, "@source": "node752840", "@target": "node752841"}, "edge752842": {"@length": 0.04935, "@source": "node752840", "@target": "node752842"}}, "node752844": {"edge752845": {"@length": 0.004379, "@source": "node752844", "@target": "node752845"}, "edge752926": {"@length": 0.041502, "@source": "node752844", "@target": "node752926"}}, "node752845": {"edge752846": {"@length": 0.001577, "@source": "node752845", "@target": "node752846"}, "edge752923": {"@length": 0.016115, "@source": "node752845", "@target": "node752923"}}, "node752846": {"edge752847": {"@length": 0.007009, "@source": "node752846", "@target": "node752847"}, "edge752918": {"@length": 0.010032, "@source": "node752846", "@target": "node752918"}}, "node752847": {"edge752848": {"@length": 0.001537, "@source": "node752847", "@target": "node752848"}, "edge752917": {"@length": 0.027062, "@source": "node752847", "@target": "node752917"}}, "node752848": {"edge752849": {"@length": 0.008506, "@source": "node752848", "@target": "node752849"}, "edge752914": {"@length": 0.008853, "@source": "node752848", "@target": "node752914"}}, "node752849": {"edge752850": {"@length": 0.000379, "@source": "node752849", "@target": "node752850"}, "edge752913": {"@length": 0.004638, "@source": "node752849", "@target": "node752913"}}, "node752850": {"edge752851": {"@length": 0.000358, "@source": "node752850", "@target": "node752851"}, "edge752912": {"@length": 0.004049, "@source": "node752850", "@target": "node752912"}}, "node752851": {"edge752852": {"@length": 0.00069, "@source": "node752851", "@target": "node752852"}, "edge752887": {"@length": 0.000236, "@source": "node752851", "@target": "node752887"}}, "node752852": {"edge752853": {"@length": 0.00126, "@source": "node752852", "@target": "node752853"}, "edge752880": {"@length": 0.000784, "@source": "node752852", "@target": "node752880"}}, "node752853": {"edge752854": {"@length": 0.000552, "@source": "node752853", "@target": "node752854"}, "edge752879": {"@length": 0.00179, "@source": "node752853", "@target": "node752879"}}, "node752854": {"edge752855": {"@length": 0.002099, "@source": "node752854", "@target": "node752855"}, "edge752856": {"@length": 0.000388, "@source": "node752854", "@target": "node752856"}}, "node752856": {"edge752857": {"@length": 0.000212, "@source": "node752856", "@target": "node752857"}, "edge752878": {"@length": 0.001689, "@source": "node752856", "@target": "node752878"}}, "node752857": {"edge752858": {"@length": 0.000205, "@source": "node752857", "@target": "node752858"}, "edge752877": {"@length": 0.002009, "@source": "node752857", "@target": "node752877"}}, "node752858": {"edge752859": {"@length": 0.000403, "@source": "node752858", "@target": "node752859"}, "edge752870": {"@length": 0.001108, "@source": "node752858", "@target": "node752870"}}, "node752859": {"edge752860": {"@length": 0.000225, "@source": "node752859", "@target": "node752860"}, "edge752867": {"@length": 0.000577, "@source": "node752859", "@target": "node752867"}}, "node752860": {"edge752861": {"@length": 0.000567, "@source": "node752860", "@target": "node752861"}, "edge752862": {"@length": 0.000422, "@source": "node752860", "@target": "node752862"}, "edge752863": {"@length": 0.000552, "@source": "node752860", "@target": "node752863"}, "edge752866": {"@length": 0.000673, "@source": "node752860", "@target": "node752866"}}, "node752863": {"edge752864": {"@length": 0.000111, "@source": "node752863", "@target": "node752864"}, "edge752865": {"@length": 0.000108, "@source": "node752863", "@target": "node752865"}}, "node752867": {"edge752868": {"@length": 0.000555, "@source": "node752867", "@target": "node752868"}, "edge752869": {"@length": 0.001455, "@source": "node752867", "@target": "node752869"}}, "node752870": {"edge752871": {"@length": 0.001374, "@source": "node752870", "@target": "node752871"}, "edge752872": {"@length": 0.000409, "@source": "node752870", "@target": "node752872"}}, "node752872": {"edge752873": {"@length": 0.001942, "@source": "node752872", "@target": "node752873"}, "edge752874": {"@length": 0.001345, "@source": "node752872", "@target": "node752874"}}, "node752874": {"edge752875": {"@length": 0.000214, "@source": "node752874", "@target": "node752875"}, "edge752876": {"@length": 0.000557, "@source": "node752874", "@target": "node752876"}}, "node752880": {"edge752881": {"@length": 0.000758, "@source": "node752880", "@target": "node752881"}, "edge752886": {"@length": 0.001954, "@source": "node752880", "@target": "node752886"}}, "node752881": {"edge752882": {"@length": 0.000775, "@source": "node752881", "@target": "node752882"}, "edge752883": {"@length": 0.000888, "@source": "node752881", "@target": "node752883"}}, "node752883": {"edge752884": {"@length": 0.000431, "@source": "node752883", "@target": "node752884"}, "edge752885": {"@length": 0.000903, "@source": "node752883", "@target": "node752885"}}, "node752887": {"edge752888": {"@length": 0.001619, "@source": "node752887", "@target": "node752888"}, "edge752901": {"@length": 0.002423, "@source": "node752887", "@target": "node752901"}}, "node752888": {"edge752889": {"@length": 0.001039, "@source": "node752888", "@target": "node752889"}, "edge752900": {"@length": 0.003387, "@source": "node752888", "@target": "node752900"}}, "node752889": {"edge752890": {"@length": 0.000827, "@source": "node752889", "@target": "node752890"}, "edge752893": {"@length": 0.000389, "@source": "node752889", "@target": "node752893"}}, "node752890": {"edge752891": {"@length": 0.000631, "@source": "node752890", "@target": "node752891"}, "edge752892": {"@length": 0.000275, "@source": "node752890", "@target": "node752892"}}, "node752893": {"edge752894": {"@length": 0.000208, "@source": "node752893", "@target": "node752894"}, "edge752897": {"@length": 0.000179, "@source": "node752893", "@target": "node752897"}}, "node752894": {"edge752895": {"@length": 0.000227, "@source": "node752894", "@target": "node752895"}, "edge752896": {"@length": 0.000337, "@source": "node752894", "@target": "node752896"}}, "node752897": {"edge752898": {"@length": 0.000341, "@source": "node752897", "@target": "node752898"}, "edge752899": {"@length": 0.000225, "@source": "node752897", "@target": "node752899"}}, "node752901": {"edge752902": {"@length": 0.005388, "@source": "node752901", "@target": "node752902"}, "edge752903": {"@length": 0.001121, "@source": "node752901", "@target": "node752903"}}, "node752903": {"edge752904": {"@length": 0.000604, "@source": "node752903", "@target": "node752904"}, "edge752911": {"@length": 0.002782, "@source": "node752903", "@target": "node752911"}}, "node752904": {"edge752905": {"@length": 0.001053, "@source": "node752904", "@target": "node752905"}, "edge752910": {"@length": 0.00237, "@source": "node752904", "@target": "node752910"}}, "node752905": {"edge752906": {"@length": 0.000673, "@source": "node752905", "@target": "node752906"}, "edge752909": {"@length": 0.001631, "@source": "node752905", "@target": "node752909"}}, "node752906": {"edge752907": {"@length": 0.002316, "@source": "node752906", "@target": "node752907"}, "edge752908": {"@length": 0.001419, "@source": "node752906", "@target": "node752908"}}, "node752914": {"edge752915": {"@length": 0.021019, "@source": "node752914", "@target": "node752915"}, "edge752916": {"@length": 0.012976, "@source": "node752914", "@target": "node752916"}}, "node752918": {"edge752919": {"@length": 0.026694, "@source": "node752918", "@target": "node752919"}, "edge752922": {"@length": 0.015167, "@source": "node752918", "@target": "node752922"}}, "node752919": {"edge752920": {"@length": 0.000733, "@source": "node752919", "@target": "node752920"}, "edge752921": {"@length": 0.001748, "@source": "node752919", "@target": "node752921"}}, "node752923": {"edge752924": {"@length": 0.00115, "@source": "node752923", "@target": "node752924"}, "edge752925": {"@length": 0.001122, "@source": "node752923", "@target": "node752925"}}}, "nodeById": {"node752837": {"@root": true}, "node752838": {"@otu": "otu296898"}, "node752839": {}, "node752840": {}, "node752841": {"@otu": "otu296854"}, "node752842": {"@otu": "otu296853"}, "node752843": {"@otu": "otu296899"}, "node752844": {}, "node752845": {}, "node752846": {}, "node752847": {}, "node752848": {}, "node752849": {}, "node752850": {}, "node752851": {}, "node752852": {}, "node752853": {}, "node752854": {}, "node752855": {"@otu": "otu296900"}, "node752856": {}, "node752857": {}, "node752858": {}, "node752859": {}, "node752860": {}, "node752861": {"@otu": "otu296901"}, "node752862": {"@otu": "otu296902"}, "node752863": {}, "node752864": {"@otu": "otu296903"}, "node752865": {"@otu": "otu296904"}, "node752866": {"@otu": "otu296905"}, "node752867": {}, "node752868": {"@otu": "otu296906"}, "node752869": {"@otu": "otu296907"}, "node752870": {}, "node752871": {"@otu": "otu296908"}, "node752872": {}, "node752873": {"@otu": "otu296909"}, "node752874": {}, "node752875": {"@otu": "otu296910"}, "node752876": {"@otu": "otu296911"}, "node752877": {"@otu": "otu296912"}, "node752878": {"@otu": "otu296913"}, "node752879": {"@otu": "otu296914"}, "node752880": {}, "node752881": {}, "node752882": {"@otu": "otu296915"}, "node752883": {}, "node752884": {"@otu": "otu296916"}, "node752885": {"@otu": "otu296917"}, "node752886": {"@otu": "otu296918"}, "node752887": {}, "node752888": {}, "node752889": {}, "node752890": {}, "node752891": {"@otu": "otu296919"}, "node752892": {"@otu": "otu296920"}, "node752893": {}, "node752894": {}, "node752895": {"@otu": "otu296921"}, "node752896": {"@otu": "otu296922"}, "node752897": {}, "node752898": {"@otu": "otu296923"}, "node752899": {"@otu": "otu296924"}, "node752900": {"@otu": "otu296925"}, "node752901": {}, "node752902": {"@otu": "otu296926"}, "node752903": {}, "node752904": {}, "node752905": {}, "node752906": {}, "node752907": {"@otu": "otu296927"}, "node752908": {"@otu": "otu296928"}, "node752909": {"@otu": "otu296929"}, "node752910": {"@otu": "otu296930"}, "node752911": {"@otu": "otu296931"}, "node752912": {"@otu": "otu296932"}, "node752913": {"@otu": "otu296933"}, "node752914": {}, "node752915": {"@otu": "otu296934"}, "node752916": {"@otu": "otu296935"}, "node752917": {"@otu": "otu296894"}, "node752918": {}, "node752919": {}, "node752920": {"@otu": "otu296936"}, "node752921": {"@otu": "otu296937"}, "node752922": {"@otu": "otu296895"}, "node752923": {}, "node752924": {"@otu": "otu296938"}, "node752925": {"@otu": "otu296939"}, "node752926": {"@otu": "otu296940"}}}}}}}}, "branch2sha": {"master": "4995ac940feac5e5f4a88286e30b17d05b47a51a"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "fc836edd65b2f63b995b0d69301b2860c769b1d0", "author_name": "Jonathan A Rees", "author_email": "jar398@mumble.net", "date": "Mon, 6 Oct 2014 22:22:00 +0000", "date_ISO_8601": "2014-10-06 22:22:00 +0000", "relative_date": "12 years ago", "message_subject": "Looked up DOI", "message_body": "(Update Study #pg_1974 via OpenTree API)"}, {"id": "d33fb39501605772a074dffc82affa5344ea9a94", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Wed, 11 Jun 2014 22:18:34 -0500", "date_ISO_8601": "2014-06-11 22:18:34 -0500", "relative_date": "12 years ago", "message_subject": "corrected study ids"}, {"id": "f8a738aeda20a73750847484e110a85c7a3e0a12", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 10 Jun 2014 23:36:42 -0500", "date_ISO_8601": "2014-06-10 23:36:42 -0500", "relative_date": "12 years ago", "message_subject": "Migrating info from gcmdr to nexsons", "message_body": "using peyotl d69c8b180fce7703c7203a0b51712eab57e2988c\ndev/decorate_pg_studies_with_gcmdr_info.py\nto set:\n  ^ot:candidateTreeForSynthesis\n  ^ot:specifiedRoot, and\n  ^ot:unrootedTree\nproperties based on the use of the trees for synthesis study\nlists in gcmdr commit 35bf307e72bed4f59724762dde4a12965abcea92"}, {"id": "593d6fbab385716dc0a12f3fc95133e8b7479b37", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 29 Apr 2014 20:05:19 -0500", "date_ISO_8601": "2014-04-29 20:05:19 -0500", "relative_date": "12 years ago", "message_subject": "initial commit with phylografter files from 29 Apr, 2014"}]}