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"otu297073", "otu297074", "otu297075", "otu297076", "otu297077", "otu297078", "otu297079", "otu297080", "otu297081", "otu297082", "otu297083", "otu297084", "otu297085", "otu297086", "otu297087", "otu297088", "otu297089", "otu297090", "otu297091", "otu297092", "otu297093", "otu297094", "otu297095", "otu297096", "otu297097", "otu297098", "otu297099", "otu297100", "otu297101", "otu297102", "otu297103", "otu297104", "otu297105", "otu297106", "otu297107", "otu297108", "otu297109", "otu297110", "otu297111", "otu297112", "otu297113", "otu297114", "otu297115", "otu297116", "otu297117", "otu297118", "otu297119", "otu297120", "otu297121", "otu297122", "otu297123", "otu297124", "otu297125", "otu297126", "otu297127", "otu297128", "otu297129", "otu297130", "otu297131", "otu297132", "otu297133", "otu297134", "otu297135", "otu297136", "otu297137", "otu297138", "otu297139", "otu297140", "otu297141", "otu297142", "otu297143", "otu297144", "otu297145", "otu297146", "otu297147", "otu297148", "otu297149", "otu297150", "otu297151", "otu297152", "otu297153", "otu297154", "otu297155", "otu297156", "otu297157", "otu297158", "otu297159", "otu297160", "otu297161", "otu297162", "otu297163", "otu297164", "otu297165", "otu297166", "otu297167", "otu297168", "otu297169", "otu297170", "otu297171", "otu297172", "otu297173", "otu297174", "otu297175", "otu297176", "otu297177", "otu297178", "otu297179", "otu297180", "otu297181", "otu297182", "otu297183", "otu297184", "otu297185", "otu297186", "otu297187", "otu297188", "otu297189", "otu297190", "otu297194", "otu297196", "otu297205", "otu297214", "otu297239", "otu297242", "otu297243", "otu297250", "otu297253", "otu297254", "otu297258", "otu297259", "otu297260", "otu297261", "otu297262", "otu297263", "otu297265", "otu297271", "otu297274", "otu297275", "otu297278", "otu297279", "otu297299", "otu297300", "otu297301", "otu297310", "otu297311", "otu297320", "otu297324", "otu297328", "otu297341", "otu297349", "otu297353", "otu297357", "otu297358", "otu297359", "otu297366", "otu297377", "otu297391", "otu297401"], "@otusID": "otus1975", "@otuID": ["otu296965", "otu296967", "otu296971", "otu296972", "otu296973", "otu296974", "otu296975", "otu296976", "otu296977", "otu296978", "otu296979", "otu296980", "otu296981", "otu296982", "otu296983", "otu296984", "otu296985", "otu296986", "otu296987", "otu296988", "otu296989", "otu296990", "otu296991", "otu296992", "otu296993", "otu296994", "otu296995", "otu296996", "otu296997", "otu296998", "otu296999", "otu297000", "otu297001", "otu297002", "otu297003", "otu297004", "otu297005", "otu297006", "otu297007", "otu297008", "otu297009", "otu297010", "otu297011", "otu297012", "otu297013", "otu297014", "otu297015", "otu297016", "otu297017", "otu297018", "otu297019", "otu297020", "otu297021", "otu297022", "otu297023", "otu297024", "otu297025", "otu297026", "otu297027", "otu297028", "otu297029", "otu297030", "otu297031", "otu297032", "otu297033", "otu297034", "otu297035", "otu297036", "otu297037", "otu297038", "otu297039", "otu297040", "otu297041", "otu297042", "otu297043", "otu297044", "otu297045", "otu297046", "otu297047", "otu297048", "otu297049", "otu297050", "otu297051", "otu297052", "otu297053", "otu297054", "otu297055", "otu297056", "otu297057", "otu297058", "otu297059", "otu297060", "otu297061", "otu297062", "otu297063", "otu297064", "otu297065", "otu297066", "otu297067", "otu297068", "otu297069", "otu297070", "otu297071", "otu297072", "otu297073", "otu297074", "otu297075", "otu297076", "otu297077", "otu297078", "otu297079", "otu297080", "otu297081", "otu297082", "otu297083", "otu297084", "otu297085", "otu297086", "otu297087", "otu297088", "otu297089", "otu297090", "otu297091", "otu297092", "otu297093", "otu297094", "otu297095", "otu297096", "otu297097", "otu297098", "otu297099", "otu297100", "otu297101", "otu297102", "otu297103", "otu297104", "otu297105", "otu297106", "otu297107", "otu297108", "otu297109", "otu297110", "otu297111", "otu297112", "otu297113", "otu297114", "otu297115", "otu297116", "otu297117", "otu297118", "otu297119", "otu297120", "otu297121", "otu297122", "otu297123", "otu297124", "otu297125", "otu297126", "otu297127", "otu297128", "otu297129", "otu297130", "otu297131", "otu297132", "otu297133", "otu297134", "otu297135", "otu297136", "otu297137", "otu297138", "otu297139", "otu297140", "otu297141", "otu297142", "otu297143", "otu297144", "otu297145", "otu297146", "otu297147", "otu297148", "otu297149", "otu297150", "otu297151", "otu297152", "otu297153", "otu297154", "otu297155", "otu297156", "otu297157", "otu297158", "otu297159", "otu297160", "otu297161", "otu297162", "otu297163", "otu297164", "otu297165", "otu297166", "otu297167", "otu297168", "otu297169", "otu297170", "otu297171", "otu297172", "otu297173", "otu297174", "otu297175", "otu297176", "otu297177", "otu297178", "otu297179", "otu297180", "otu297181", "otu297182", "otu297183", "otu297184", "otu297185", "otu297186", "otu297187", "otu297188", "otu297189", "otu297190", "otu297194", "otu297196", "otu297205", "otu297214", "otu297239", "otu297242", "otu297243", "otu297250", "otu297253", "otu297254", "otu297258", "otu297259", "otu297260", "otu297261", "otu297262", "otu297263", "otu297265", "otu297271", "otu297274", "otu297275", "otu297278", "otu297279", "otu297299", "otu297300", "otu297301", "otu297310", "otu297311", "otu297320", "otu297324", "otu297328", "otu297341", "otu297349", "otu297353", "otu297357", "otu297358", "otu297359", "otu297366", "otu297377", "otu297391", "otu297401"]}, "@severity": "WARNING"}], "@about": "#peyotl-validator-event"}], "@xsi:type": "nex:LiteralMeta", "@property": "ot:annotationEvents"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:candidateTreeForSynthesis", "@datatype": "xsd:string", "$": "tree4041"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:comment", "@datatype": "xsd:string", "$": "Only 209 of 471 OTUs mapped, but I think this is just due to not expanding \"T\" to \"Tragopogon\". TBD: use regular expression feature to finish up the mapping."}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:curatorName", "@datatype": "xsd:string", "$": "bryan drew"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:curatorName", "@datatype": "xsd:string", "$": "Jonathan A Rees"}, {"@href": "", "@xsi:type": "nex:ResourceMeta", "@rel": "ot:dataDeposit"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:focalClade", "@datatype": "xsd:int", "$": 143408}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:focalCladeOTTTaxonName", "@datatype": "xsd:string", "$": "Tragopogon"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:notIntendedForSynthesis", "@datatype": "xsd:boolean", "$": false}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:studyId", "@datatype": "xsd:string", "$": "pg_1975"}, {"@href": "http://dx.doi.org/10.1080/00837792.2012.10670912", "@xsi:type": "nex:ResourceMeta", "@rel": "ot:studyPublication"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:studyPublicationReference", "@datatype": "xsd:string", "$": "Evgeny V. Mavrodiev, Matthew A. Gitzendanner, Andre K. Calaminus, Riccardo M. Baldini, Pamela S. Soltis, Douglas E. Soltis. 2012. Molecular phylogeny of Tragopogon L. (Asteraceae) based on seven nuclear loci (Adh, GapC, LFY, AP3, PI, ITS, and ETS). Webbia 67(2): 111-137. 2012."}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:studyYear", "@datatype": "xsd:int", "$": 2012}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:tag", "@datatype": "xsd:string", "$": "ingroup added;"}]}}, "branch2sha": {"master": "783c337d3b467b6f3d70bb8decd56861e6050bb1"}, "commentHTML": "
Only 209 of 471 OTUs mapped, but I think this is just due to not expanding \"T\" to \"Tragopogon\". TBD: use regular expression feature to finish up the mapping.
", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "8f5c2ae7df27be93c582419b7355fc254365a030", "author_name": "Jonathan A Rees", "author_email": "jar398@mumble.net", "date": "Tue, 1 Nov 2016 20:38:21 +0000", "date_ISO_8601": "2016-11-01 20:38:21 +0000", "relative_date": "7 years ago", "message_subject": "add comment about what to do with 'T' OTU labels", "message_body": "(Update document 'pg_1975' via OpenTree API)"}, {"id": "d33fb39501605772a074dffc82affa5344ea9a94", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Wed, 11 Jun 2014 22:18:34 -0500", "date_ISO_8601": "2014-06-11 22:18:34 -0500", "relative_date": "10 years ago", "message_subject": "corrected study ids"}, {"id": "f8a738aeda20a73750847484e110a85c7a3e0a12", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 10 Jun 2014 23:36:42 -0500", "date_ISO_8601": "2014-06-10 23:36:42 -0500", "relative_date": "10 years ago", "message_subject": "Migrating info from gcmdr to nexsons", "message_body": "using peyotl d69c8b180fce7703c7203a0b51712eab57e2988c\ndev/decorate_pg_studies_with_gcmdr_info.py\nto set:\n ^ot:candidateTreeForSynthesis\n ^ot:specifiedRoot, and\n ^ot:unrootedTree\nproperties based on the use of the trees for synthesis study\nlists in gcmdr commit 35bf307e72bed4f59724762dde4a12965abcea92"}, {"id": "593d6fbab385716dc0a12f3fc95133e8b7479b37", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 29 Apr 2014 20:05:19 -0500", "date_ISO_8601": "2014-04-29 20:05:19 -0500", "relative_date": "10 years ago", "message_subject": "initial commit with phylografter files from 29 Apr, 2014"}]}