{"sha": "24afc85a444963f10ca51c6e20138fe592a4b525", "data": {"nexml": {"@generator": "Phylografter nexml-json exporter", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "validator of NexSON constraints as well as constraints that would allow a study to be imported into the Open Tree of Life's phylogenetic synthesis tools", "@id": "peyotl-validator", "@name": "validate_ot_nexson.py", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": ["--embed", "--agent-only"], "otherProperty": [{"name": "pythonVersion", "value": "2.7.5+"}, {"name": "pythonImplementation", "value": "CPython"}]}}]}, "^ot:annotationEvents": {"annotation": [{"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu314119", "otu314152", "otu314160", "otu314175"], "refersTo": {"@top": "otus", "@idref": "otus2128", "@otusID": "otus2128"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu314120", "otu314182"], "refersTo": {"@top": "otus", "@idref": "otus2128", "@otusID": "otus2128"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu314121", "otu314123", "otu314161", "otu314164", "otu314178"], "refersTo": {"@top": "otus", "@idref": "otus2128", "@otusID": "otus2128"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu314122", "otu314138"], "refersTo": {"@top": "otus", "@idref": "otus2128", "@otusID": "otus2128"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu314124", "otu314125", "otu314134", "otu314136", "otu314144", "otu314148", "otu314173"], "refersTo": {"@top": "otus", "@idref": "otus2128", "@otusID": "otus2128"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu314126", "otu314140"], "refersTo": {"@top": "otus", "@idref": "otus2128", "@otusID": "otus2128"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu314127", "otu314146"], "refersTo": {"@top": "otus", "@idref": "otus2128", "@otusID": "otus2128"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu314128", "otu314154", "otu314163", "otu314176"], "refersTo": {"@top": "otus", "@idref": "otus2128", "@otusID": "otus2128"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu314129", "otu314170"], "refersTo": {"@top": "otus", "@idref": "otus2128", "@otusID": "otus2128"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu314130", "otu314159"], "refersTo": {"@top": "otus", "@idref": "otus2128", "@otusID": "otus2128"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu314131", "otu314137"], "refersTo": {"@top": "otus", "@idref": "otus2128", "@otusID": "otus2128"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu314132", "otu314133", "otu314135", "otu314153"], "refersTo": {"@top": "otus", "@idref": "otus2128", "@otusID": "otus2128"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu314139", "otu314143", "otu314149", "otu314180"], "refersTo": {"@top": "otus", "@idref": "otus2128", "@otusID": "otus2128"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu314141", "otu314171"], "refersTo": {"@top": "otus", "@idref": "otus2128", "@otusID": "otus2128"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu314147", "otu314183"], "refersTo": {"@top": "otus", "@idref": "otus2128", "@otusID": "otus2128"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu314150", "otu314179", "otu314184"], "refersTo": {"@top": "otus", "@idref": "otus2128", "@otusID": "otus2128"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu314151", "otu314158", "otu314169", "otu314174", "otu314177"], "refersTo": {"@top": "otus", "@idref": "otus2128", "@otusID": "otus2128"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu314157", "otu314181"], "refersTo": {"@top": "otus", "@idref": "otus2128", "@otusID": "otus2128"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu314162", "otu314168"], "refersTo": {"@top": "otus", "@idref": "otus2128", "@otusID": "otus2128"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu314167", "otu314172"], "refersTo": {"@top": "otus", "@idref": "otus2128", "@otusID": "otus2128"}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": ["tree4437"], "^ot:curatorName": "bryan drew", "^ot:dataDeposit": {"@href": "http://purl.org/phylo/treebase/phylows/study/TB2:S9999"}, "^ot:focalClade": 609811, "^ot:focalCladeOTTTaxonName": "Plantago", "^ot:messages": {"message": []}, "^ot:otusElementOrder": ["otus2128"], "^ot:studyId": "pg_2128", "^ot:studyPublication": {"@href": "http://dx.doi.org/10.3732/ajb.0800400"}, "^ot:studyPublicationReference": "Ishikawa N., Yokoyama J., & Tsukaya H. 2009. Molecular evidence of reticulate evolution in the subgenus Plantago (Plantaginaceae). American Journal of Botany, 96(9): 1627-1635.", "^ot:studyYear": 2009, "^ot:tag": [], "^ot:treesElementOrder": ["trees2128"], "otusById": {"otus2128": {"otuById": {"otu314119": {"^ot:originalLabel": "Plantago media D.3", "^ot:ottId": 989039, "^ot:ottTaxonName": "Plantago media", "^ot:treebaseOTUId": "Tl255377"}, "otu314120": {"^ot:originalLabel": "Plantago tomentosa F", "^ot:ottId": 185909, "^ot:ottTaxonName": "Plantago tomentosa", "^ot:treebaseOTUId": "Tl255378"}, "otu314121": {"^ot:originalLabel": "Plantago uniglumis J.4", "^ot:ottId": 160919, "^ot:ottTaxonName": "Plantago uniglumis", "^ot:treebaseOTUId": "Tl255379"}, "otu314122": {"^ot:originalLabel": "Plantago rugelii I", "^ot:ottId": 989042, "^ot:ottTaxonName": "Plantago rugelii", "^ot:treebaseOTUId": "Tl255380"}, "otu314123": {"^ot:originalLabel": "Plantago uniglumis J.1", "^ot:ottId": 160919, "^ot:ottTaxonName": "Plantago uniglumis", "^ot:treebaseOTUId": "Tl255381"}, "otu314124": {"^ot:originalLabel": "Plantago spathulata P.2", "^ot:ottId": 185904, "^ot:ottTaxonName": "Plantago spathulata", "^ot:treebaseOTUId": "Tl255382"}, "otu314125": {"^ot:originalLabel": "Plantago spathulata Q", "^ot:ottId": 185904, "^ot:ottTaxonName": "Plantago spathulata", "^ot:treebaseOTUId": "Tl255383"}, "otu314126": {"^ot:originalLabel": "Plantago asiatica I", "^ot:ottId": 217282, "^ot:ottTaxonName": "Plantago asiatica", "^ot:treebaseOTUId": "Tl255384"}, "otu314127": {"^ot:originalLabel": "Plantago tenuiflora A.2", "^ot:ottId": 185911, "^ot:ottTaxonName": "Plantago tenuiflora", "^ot:treebaseOTUId": "Tl255385"}, "otu314128": {"^ot:originalLabel": "Plantago maritima 2", "^ot:ottId": 236705, "^ot:ottTaxonName": "Plantago maritima", "^ot:treebaseOTUId": "Tl255386"}, "otu314129": {"^ot:originalLabel": "Plantago major AJ884919 I", "^ot:ottId": 122965, "^ot:ottTaxonName": "Plantago major", "^ot:treebaseOTUId": "Tl255387"}, "otu314130": {"^ot:originalLabel": "Plantago stauntoni Q.2", "^ot:ottId": 185900, "^ot:ottTaxonName": "Plantago stauntonii", "^ot:treebaseOTUId": "Tl255388"}, "otu314131": {"^ot:originalLabel": "Plantago asiatica f.yakusimensis I", "^ot:ottId": 838274, "^ot:ottTaxonName": "Plantago asiatica f. yakusimensis", "^ot:treebaseOTUId": "Tl255389"}, "otu314132": {"^ot:originalLabel": "Plantago australis M.1", "^ot:ottId": 989047, "^ot:ottTaxonName": "Plantago australis", "^ot:treebaseOTUId": "Tl255390"}, "otu314133": {"^ot:originalLabel": "Plantago australis F.2", "^ot:ottId": 989047, "^ot:ottTaxonName": "Plantago australis", "^ot:treebaseOTUId": "Tl255391"}, "otu314134": {"^ot:originalLabel": "Plantago spathulata P.1", "^ot:ottId": 185904, "^ot:ottTaxonName": "Plantago spathulata", "^ot:treebaseOTUId": "Tl255392"}, "otu314135": {"^ot:originalLabel": "Plantago australis F.1", "^ot:ottId": 989047, "^ot:ottTaxonName": "Plantago australis", "^ot:treebaseOTUId": "Tl255393"}, "otu314136": {"^ot:originalLabel": "Plantago spathulata N.1", "^ot:ottId": 185904, "^ot:ottTaxonName": "Plantago spathulata", "^ot:treebaseOTUId": "Tl255394"}, "otu314137": {"^ot:originalLabel": "Plantago asiatica f.yakusimensis L", "^ot:ottId": 838274, "^ot:ottTaxonName": "Plantago asiatica f. yakusimensis", "^ot:treebaseOTUId": "Tl255395"}, "otu314138": {"^ot:originalLabel": "Plantago rugelii L", "^ot:ottId": 989042, "^ot:ottTaxonName": "Plantago rugelii", "^ot:treebaseOTUId": "Tl255396"}, "otu314139": {"^ot:originalLabel": "Plantago raoulii Q", "^ot:ottId": 463394, "^ot:ottTaxonName": "Plantago raoulii", "^ot:treebaseOTUId": "Tl255397"}, "otu314140": {"^ot:originalLabel": "Plantago asiatica L", "^ot:ottId": 217282, "^ot:ottTaxonName": "Plantago asiatica", "^ot:treebaseOTUId": "Tl255398"}, "otu314141": {"^ot:originalLabel": "Plantago alpina 2", "^ot:ottId": 217265, "^ot:ottTaxonName": "Plantago alpina", "^ot:treebaseOTUId": "Tl255399"}, "otu314142": {"^ot:originalLabel": "Plantago depressa K", "^ot:ottId": 1004414, "^ot:ottTaxonName": "Plantago depressa", "^ot:treebaseOTUId": "Tl255400"}, "otu314143": {"^ot:originalLabel": "Plantago raoulii O", "^ot:ottId": 463394, "^ot:ottTaxonName": "Plantago raoulii", "^ot:treebaseOTUId": "Tl255401"}, "otu314144": {"^ot:originalLabel": "Plantago spathulata O.1", "^ot:ottId": 185904, "^ot:ottTaxonName": "Plantago spathulata", "^ot:treebaseOTUId": "Tl255402"}, "otu314145": {"^ot:originalLabel": "Plantago cornuti E", "^ot:ottId": 217285, "^ot:ottTaxonName": "Plantago cornuti", "^ot:treebaseOTUId": "Tl255403"}, "otu314146": {"^ot:originalLabel": "Plantago tenuiflora A.1", "^ot:ottId": 185911, "^ot:ottTaxonName": "Plantago tenuiflora", "^ot:treebaseOTUId": "Tl255404"}, "otu314147": {"^ot:originalLabel": "Plantago palmata B", "^ot:ottId": 811320, "^ot:ottTaxonName": "Plantago palmata", "^ot:treebaseOTUId": "Tl255405"}, "otu314148": {"^ot:originalLabel": "Plantago spathulata O.2", "^ot:ottId": 185904, "^ot:ottTaxonName": "Plantago spathulata", "^ot:treebaseOTUId": "Tl255406"}, "otu314149": {"^ot:originalLabel": "Plantago raoulii P", "^ot:ottId": 463394, "^ot:ottTaxonName": "Plantago raoulii", "^ot:treebaseOTUId": "Tl255407"}, "otu314150": {"^ot:originalLabel": "Plantago formosana I.1", "^ot:ottId": 943266, "^ot:ottTaxonName": "Plantago formosana", "^ot:treebaseOTUId": "Tl255408"}, "otu314151": {"^ot:originalLabel": "Plantago rigida H.5", "^ot:ottId": 989045, "^ot:ottTaxonName": "Plantago rigida", "^ot:treebaseOTUId": "Tl255409"}, "otu314152": {"^ot:originalLabel": "Plantago media D.1", "^ot:ottId": 989039, "^ot:ottTaxonName": "Plantago media", "^ot:treebaseOTUId": "Tl255410"}, "otu314153": {"^ot:originalLabel": "Plantago australis M.2", "^ot:ottId": 989047, "^ot:ottTaxonName": "Plantago australis", "^ot:treebaseOTUId": "Tl255411"}, "otu314154": {"^ot:originalLabel": "Plantago maritima 3", "^ot:ottId": 236705, "^ot:ottTaxonName": "Plantago maritima", "^ot:treebaseOTUId": "Tl255412"}, "otu314155": {"^ot:originalLabel": "Plantago camtchatica K", "^ot:ottId": 648648, "^ot:ottTaxonName": "Plantago camtschatica", "^ot:treebaseOTUId": "Tl255413"}, "otu314156": {"^ot:originalLabel": "Plantago major var.japonica I", "^ot:ottId": 943262, "^ot:ottTaxonName": "Plantago major var. japonica", "^ot:treebaseOTUId": "Tl255414"}, "otu314157": {"^ot:originalLabel": "Plantago trinitatis F", "^ot:ottId": 160915, "^ot:ottTaxonName": "Plantago trinitatis", "^ot:treebaseOTUId": "Tl255415"}, "otu314158": {"^ot:originalLabel": "Plantago rigida H.4", "^ot:ottId": 989045, "^ot:ottTaxonName": "Plantago rigida", "^ot:treebaseOTUId": "Tl255416"}, "otu314159": {"^ot:originalLabel": "Plantago stauntoni Q.1", "^ot:ottId": 185900, "^ot:ottTaxonName": "Plantago stauntonii", "^ot:treebaseOTUId": "Tl255417"}, "otu314160": {"^ot:originalLabel": "Plantago media D.4", "^ot:ottId": 989039, "^ot:ottTaxonName": "Plantago media", "^ot:treebaseOTUId": "Tl255418"}, "otu314161": {"^ot:originalLabel": "Plantago uniglumis J.2", "^ot:ottId": 160919, "^ot:ottTaxonName": "Plantago uniglumis", "^ot:treebaseOTUId": "Tl255419"}, "otu314162": {"^ot:originalLabel": "Plantago maxima C.1", "^ot:ottId": 811331, "^ot:ottTaxonName": "Plantago maxima", "^ot:treebaseOTUId": "Tl255420"}, "otu314163": {"^ot:originalLabel": "Plantago maritima 1", "^ot:ottId": 236705, "^ot:ottTaxonName": "Plantago maritima", "^ot:treebaseOTUId": "Tl255421"}, "otu314164": {"^ot:originalLabel": "Plantago uniglumis J.3", "^ot:ottId": 160919, "^ot:ottTaxonName": "Plantago uniglumis", "^ot:treebaseOTUId": "Tl255422"}, "otu314165": {"^ot:originalLabel": "Plantago reniformis B", "^ot:ottId": 560312, "^ot:ottTaxonName": "Plantago reniformis", "^ot:treebaseOTUId": "Tl255423"}, "otu314166": {"^ot:originalLabel": "Plantago debilis Q", "^ot:ottId": 236725, "^ot:ottTaxonName": "Plantago debilis", "^ot:treebaseOTUId": "Tl255424"}, "otu314167": {"^ot:originalLabel": "Plantago virginica M", "^ot:ottId": 12535, "^ot:ottTaxonName": "Plantago virginica", "^ot:treebaseOTUId": "Tl255425"}, "otu314168": {"^ot:originalLabel": "Plantago maxima C.2", "^ot:ottId": 811331, "^ot:ottTaxonName": "Plantago maxima", "^ot:treebaseOTUId": "Tl255426"}, "otu314169": {"^ot:originalLabel": "Plantago rigida H.3", "^ot:ottId": 989045, "^ot:ottTaxonName": "Plantago rigida", "^ot:treebaseOTUId": "Tl255427"}, "otu314170": {"^ot:originalLabel": "Plantago major I", "^ot:ottId": 122965, "^ot:ottTaxonName": "Plantago major", "^ot:treebaseOTUId": "Tl255428"}, "otu314171": {"^ot:originalLabel": "Plantago alpina 1", "^ot:ottId": 217265, "^ot:ottTaxonName": "Plantago alpina", "^ot:treebaseOTUId": "Tl255429"}, "otu314172": {"^ot:originalLabel": "Plantago virginica F", "^ot:ottId": 12535, "^ot:ottTaxonName": "Plantago virginica", "^ot:treebaseOTUId": "Tl255430"}, "otu314173": {"^ot:originalLabel": "Plantago spathulata N.2", "^ot:ottId": 185904, "^ot:ottTaxonName": "Plantago spathulata", "^ot:treebaseOTUId": "Tl255431"}, "otu314174": {"^ot:originalLabel": "Plantago rigida H.2", "^ot:ottId": 989045, "^ot:ottTaxonName": "Plantago rigida", "^ot:treebaseOTUId": "Tl255432"}, "otu314175": {"^ot:originalLabel": "Plantago media D.2", "^ot:ottId": 989039, "^ot:ottTaxonName": "Plantago media", "^ot:treebaseOTUId": "Tl255433"}, "otu314176": {"^ot:originalLabel": "Plantago maritima 4", "^ot:ottId": 236705, "^ot:ottTaxonName": "Plantago maritima", "^ot:treebaseOTUId": "Tl255434"}, "otu314177": {"^ot:originalLabel": "Plantago rigida H.1", "^ot:ottId": 989045, "^ot:ottTaxonName": "Plantago rigida", "^ot:treebaseOTUId": "Tl255435"}, "otu314178": {"^ot:originalLabel": "Plantago uniglumis J.5", "^ot:ottId": 160919, "^ot:ottTaxonName": "Plantago uniglumis", "^ot:treebaseOTUId": "Tl255436"}, "otu314179": {"^ot:originalLabel": "Plantago formosana I.2", "^ot:ottId": 943266, "^ot:ottTaxonName": "Plantago formosana", "^ot:treebaseOTUId": "Tl255437"}, "otu314180": {"^ot:originalLabel": "Plantago raoulii N", "^ot:ottId": 463394, "^ot:ottTaxonName": "Plantago raoulii", "^ot:treebaseOTUId": "Tl255438"}, "otu314181": {"^ot:originalLabel": "Plantago trinitatis M", "^ot:ottId": 160915, "^ot:ottTaxonName": "Plantago trinitatis", "^ot:treebaseOTUId": "Tl255439"}, "otu314182": {"^ot:originalLabel": "Plantago tomentosa M", "^ot:ottId": 185909, "^ot:ottTaxonName": "Plantago tomentosa", "^ot:treebaseOTUId": "Tl255440"}, "otu314183": {"^ot:originalLabel": "Plantago palmata G", "^ot:ottId": 811320, "^ot:ottTaxonName": "Plantago palmata", "^ot:treebaseOTUId": "Tl255441"}, "otu314184": {"^ot:originalLabel": "Plantago formosana L", "^ot:ottId": 943266, "^ot:ottTaxonName": "Plantago formosana", "^ot:treebaseOTUId": "Tl255442"}}}}, "treesById": {"trees2128": {"@otus": "otus2128", "^ot:treeElementOrder": ["tree4437"], "treeById": {"tree4437": {"@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "", "^ot:branchLengthTimeUnit": "", "^ot:curatedType": "Fig. 2", "^ot:inGroupClade": "node803092", "^ot:outGroupEdge": "", "^ot:rootNodeId": "node803092", "^ot:specifiedRoot": "node803092", "^ot:tag": [], "^ot:unrootedTree": false, "edgeBySourceId": {"node803092": {"edge803093": {"@source": "node803092", "@target": "node803093"}, "edge803104": {"@source": "node803092", "@target": "node803104"}}, "node803093": {"edge803094": {"@source": "node803093", "@target": "node803094"}, "edge803095": {"@source": "node803093", "@target": "node803095"}}, "node803095": {"edge803096": {"@source": "node803095", "@target": "node803096"}, "edge803097": {"@source": "node803095", "@target": "node803097"}}, "node803097": {"edge803098": {"@source": "node803097", "@target": "node803098"}, "edge803103": {"@source": "node803097", "@target": "node803103"}}, "node803098": {"edge803099": {"@source": "node803098", "@target": "node803099"}, "edge803102": {"@source": "node803098", "@target": "node803102"}}, "node803099": {"edge803100": {"@source": "node803099", "@target": "node803100"}, "edge803101": {"@source": "node803099", "@target": "node803101"}}, "node803104": {"edge803105": {"@source": "node803104", "@target": "node803105"}, "edge803108": {"@source": "node803104", "@target": "node803108"}}, "node803105": {"edge803106": {"@source": "node803105", "@target": "node803106"}, "edge803107": {"@source": "node803105", "@target": "node803107"}}, "node803108": {"edge803109": {"@source": "node803108", "@target": "node803109"}, "edge803198": {"@source": "node803108", "@target": "node803198"}}, "node803109": {"edge803110": {"@source": "node803109", "@target": "node803110"}, "edge803146": {"@source": "node803109", "@target": "node803146"}}, "node803110": {"edge803111": {"@source": "node803110", "@target": "node803111"}, "edge803136": {"@source": "node803110", "@target": "node803136"}, "edge803137": {"@source": "node803110", "@target": "node803137"}}, "node803111": {"edge803112": {"@source": "node803111", "@target": "node803112"}, "edge803135": {"@source": "node803111", "@target": "node803135"}}, "node803112": {"edge803113": {"@source": "node803112", "@target": "node803113"}, "edge803126": {"@source": "node803112", "@target": "node803126"}}, "node803113": {"edge803114": {"@source": "node803113", "@target": "node803114"}, "edge803125": {"@source": "node803113", "@target": "node803125"}}, "node803114": {"edge803115": {"@source": "node803114", "@target": "node803115"}, "edge803119": {"@source": "node803114", "@target": "node803119"}}, "node803115": {"edge803116": {"@source": "node803115", "@target": "node803116"}, "edge803117": {"@source": "node803115", "@target": "node803117"}, "edge803118": {"@source": "node803115", "@target": "node803118"}}, "node803119": {"edge803120": {"@source": "node803119", "@target": "node803120"}, "edge803124": {"@source": "node803119", "@target": "node803124"}}, "node803120": {"edge803121": {"@source": "node803120", "@target": "node803121"}, "edge803122": {"@source": "node803120", "@target": "node803122"}, "edge803123": {"@source": "node803120", "@target": "node803123"}}, "node803126": {"edge803127": {"@source": "node803126", "@target": "node803127"}, "edge803132": {"@source": "node803126", "@target": "node803132"}}, "node803127": {"edge803128": {"@source": "node803127", "@target": "node803128"}, "edge803131": {"@source": "node803127", "@target": "node803131"}}, "node803128": {"edge803129": {"@source": "node803128", "@target": "node803129"}, "edge803130": {"@source": "node803128", "@target": "node803130"}}, "node803132": {"edge803133": {"@source": "node803132", "@target": "node803133"}, "edge803134": {"@source": "node803132", "@target": "node803134"}}, "node803137": {"edge803138": {"@source": "node803137", "@target": "node803138"}, "edge803145": {"@source": "node803137", "@target": "node803145"}}, "node803138": {"edge803139": {"@source": "node803138", "@target": "node803139"}, "edge803144": {"@source": "node803138", "@target": "node803144"}}, "node803139": {"edge803140": {"@source": "node803139", "@target": "node803140"}, "edge803143": {"@source": "node803139", "@target": "node803143"}}, "node803140": {"edge803141": {"@source": "node803140", "@target": "node803141"}, "edge803142": {"@source": "node803140", "@target": "node803142"}}, "node803146": {"edge803147": {"@source": "node803146", "@target": "node803147"}, "edge803189": {"@source": "node803146", "@target": "node803189"}}, "node803147": {"edge803148": {"@source": "node803147", "@target": "node803148"}, "edge803152": {"@source": "node803147", "@target": "node803152"}, "edge803161": {"@source": "node803147", "@target": "node803161"}, "edge803186": {"@source": "node803147", "@target": "node803186"}}, "node803148": {"edge803149": {"@source": "node803148", "@target": "node803149"}, "edge803150": {"@source": "node803148", "@target": "node803150"}, "edge803151": {"@source": "node803148", "@target": "node803151"}}, "node803152": {"edge803153": {"@source": "node803152", "@target": "node803153"}, "edge803154": {"@source": "node803152", "@target": "node803154"}}, "node803154": {"edge803155": {"@source": "node803154", "@target": "node803155"}, "edge803159": {"@source": "node803154", "@target": "node803159"}, "edge803160": {"@source": "node803154", "@target": "node803160"}}, "node803155": {"edge803156": {"@source": "node803155", "@target": "node803156"}, "edge803157": {"@source": "node803155", "@target": "node803157"}, "edge803158": {"@source": "node803155", "@target": "node803158"}}, "node803161": {"edge803162": {"@source": "node803161", "@target": "node803162"}, "edge803182": {"@source": "node803161", "@target": "node803182"}}, "node803162": {"edge803163": {"@source": "node803162", "@target": "node803163"}, "edge803177": {"@source": "node803162", "@target": "node803177"}}, "node803163": {"edge803164": {"@source": "node803163", "@target": "node803164"}, "edge803172": {"@source": "node803163", "@target": "node803172"}}, "node803164": {"edge803165": {"@source": "node803164", "@target": "node803165"}, "edge803171": {"@source": "node803164", "@target": "node803171"}}, "node803165": {"edge803166": {"@source": "node803165", "@target": "node803166"}, "edge803170": {"@source": "node803165", "@target": "node803170"}}, "node803166": {"edge803167": {"@source": "node803166", "@target": "node803167"}, "edge803168": {"@source": "node803166", "@target": "node803168"}, "edge803169": {"@source": "node803166", "@target": "node803169"}}, "node803172": {"edge803173": {"@source": "node803172", "@target": "node803173"}, "edge803176": {"@source": "node803172", "@target": "node803176"}}, "node803173": {"edge803174": {"@source": "node803173", "@target": "node803174"}, "edge803175": {"@source": "node803173", "@target": "node803175"}}, "node803177": {"edge803178": {"@source": "node803177", "@target": "node803178"}, "edge803181": {"@source": "node803177", "@target": "node803181"}}, "node803178": {"edge803179": {"@source": "node803178", "@target": "node803179"}, "edge803180": {"@source": "node803178", "@target": "node803180"}}, "node803182": {"edge803183": {"@source": "node803182", "@target": "node803183"}, "edge803184": {"@source": "node803182", "@target": "node803184"}, "edge803185": {"@source": "node803182", "@target": "node803185"}}, "node803186": {"edge803187": {"@source": "node803186", "@target": "node803187"}, "edge803188": {"@source": "node803186", "@target": "node803188"}}, "node803189": {"edge803190": {"@source": "node803189", "@target": "node803190"}, "edge803195": {"@source": "node803189", "@target": "node803195"}}, "node803190": {"edge803191": {"@source": "node803190", "@target": "node803191"}, "edge803192": {"@source": "node803190", "@target": "node803192"}}, "node803192": {"edge803193": {"@source": "node803192", "@target": "node803193"}, "edge803194": {"@source": "node803192", "@target": "node803194"}}, "node803195": {"edge803196": {"@source": "node803195", "@target": "node803196"}, "edge803197": {"@source": "node803195", "@target": "node803197"}}, "node803198": {"edge803199": {"@source": "node803198", "@target": "node803199"}, "edge803202": {"@source": "node803198", "@target": "node803202"}}, "node803199": {"edge803200": {"@source": "node803199", "@target": "node803200"}, "edge803201": {"@source": "node803199", "@target": "node803201"}}, "node803202": {"edge803203": {"@source": "node803202", "@target": "node803203"}, "edge803206": {"@source": "node803202", "@target": "node803206"}}, "node803203": {"edge803204": {"@source": "node803203", "@target": "node803204"}, "edge803205": {"@source": "node803203", "@target": "node803205"}}, "node803206": {"edge803207": {"@source": "node803206", "@target": "node803207"}, "edge803212": {"@source": "node803206", "@target": "node803212"}}, "node803207": {"edge803208": {"@source": "node803207", "@target": "node803208"}, "edge803211": {"@source": "node803207", "@target": "node803211"}}, "node803208": {"edge803209": {"@source": "node803208", "@target": "node803209"}, "edge803210": {"@source": "node803208", "@target": "node803210"}}}, "nodeById": {"node803092": {"@root": true}, "node803093": {}, "node803094": {"@otu": "otu314141"}, "node803095": {}, "node803096": {"@otu": "otu314171"}, "node803097": {}, "node803098": {}, "node803099": {}, "node803100": {"@otu": "otu314176"}, "node803101": {"@otu": "otu314154"}, "node803102": {"@otu": "otu314128"}, "node803103": {"@otu": "otu314163"}, "node803104": {}, "node803105": {}, "node803106": {"@otu": "otu314127"}, "node803107": {"@otu": "otu314146"}, "node803108": {}, "node803109": {}, "node803110": {}, "node803111": {}, "node803112": {}, "node803113": {}, "node803114": {}, "node803115": {}, "node803116": {"@otu": "otu314170"}, "node803117": {"@otu": "otu314129"}, "node803118": {"@otu": "otu314156"}, "node803119": {}, "node803120": {}, "node803121": {"@otu": "otu314126"}, "node803122": {"@otu": "otu314131"}, "node803123": {"@otu": "otu314179"}, "node803124": {"@otu": "otu314150"}, "node803125": {"@otu": "otu314122"}, "node803126": {}, "node803127": {}, "node803128": {}, "node803129": {"@otu": "otu314158"}, "node803130": {"@otu": "otu314151"}, "node803131": {"@otu": "otu314169"}, "node803132": {}, "node803133": {"@otu": "otu314177"}, "node803134": {"@otu": "otu314174"}, "node803135": {"@otu": "otu314183"}, "node803136": {"@otu": "otu314145"}, "node803137": {}, "node803138": {}, "node803139": {}, "node803140": {}, "node803141": {"@otu": "otu314157"}, "node803142": {"@otu": "otu314120"}, "node803143": {"@otu": "otu314133"}, "node803144": {"@otu": "otu314135"}, "node803145": {"@otu": "otu314172"}, "node803146": {}, "node803147": {}, "node803148": {}, "node803149": {"@otu": "otu314140"}, "node803150": {"@otu": "otu314137"}, "node803151": {"@otu": "otu314184"}, "node803152": {}, "node803153": {"@otu": "otu314138"}, "node803154": {}, "node803155": {}, "node803156": {"@otu": "otu314181"}, "node803157": {"@otu": "otu314182"}, "node803158": {"@otu": "otu314153"}, "node803159": {"@otu": "otu314167"}, "node803160": {"@otu": "otu314132"}, "node803161": {}, "node803162": {}, "node803163": {}, "node803164": {}, "node803165": {}, "node803166": {}, "node803167": {"@otu": "otu314166"}, "node803168": {"@otu": "otu314125"}, "node803169": {"@otu": "otu314139"}, "node803170": {"@otu": "otu314130"}, "node803171": {"@otu": "otu314159"}, "node803172": {}, "node803173": {}, "node803174": {"@otu": "otu314124"}, "node803175": {"@otu": "otu314134"}, "node803176": {"@otu": "otu314149"}, "node803177": {}, "node803178": {}, "node803179": {"@otu": "otu314144"}, "node803180": {"@otu": "otu314148"}, "node803181": {"@otu": "otu314143"}, "node803182": {}, "node803183": {"@otu": "otu314173"}, "node803184": {"@otu": "otu314136"}, "node803185": {"@otu": "otu314180"}, "node803186": {}, "node803187": {"@otu": "otu314142"}, "node803188": {"@otu": "otu314155"}, "node803189": {}, "node803190": {}, "node803191": {"@otu": "otu314164"}, "node803192": {}, "node803193": {"@otu": "otu314121"}, "node803194": {"@otu": "otu314178"}, "node803195": {}, "node803196": {"@otu": "otu314161"}, "node803197": {"@otu": "otu314123"}, "node803198": {}, "node803199": {}, "node803200": {"@otu": "otu314165"}, "node803201": {"@otu": "otu314147"}, "node803202": {}, "node803203": {}, "node803204": {"@otu": "otu314162"}, "node803205": {"@otu": "otu314168"}, "node803206": {}, "node803207": {}, "node803208": {}, "node803209": {"@otu": "otu314119"}, "node803210": {"@otu": "otu314160"}, "node803211": {"@otu": "otu314175"}, "node803212": {"@otu": "otu314152"}}}}}}}}, "branch2sha": {"master": "24afc85a444963f10ca51c6e20138fe592a4b525"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "d33fb39501605772a074dffc82affa5344ea9a94", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Wed, 11 Jun 2014 22:18:34 -0500", "date_ISO_8601": "2014-06-11 22:18:34 -0500", "relative_date": "12 years ago", "message_subject": "corrected study ids"}, {"id": "f8a738aeda20a73750847484e110a85c7a3e0a12", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 10 Jun 2014 23:36:42 -0500", "date_ISO_8601": "2014-06-10 23:36:42 -0500", "relative_date": "12 years ago", "message_subject": "Migrating info from gcmdr to nexsons", "message_body": "using peyotl d69c8b180fce7703c7203a0b51712eab57e2988c\ndev/decorate_pg_studies_with_gcmdr_info.py\nto set:\n  ^ot:candidateTreeForSynthesis\n  ^ot:specifiedRoot, and\n  ^ot:unrootedTree\nproperties based on the use of the trees for synthesis study\nlists in gcmdr commit 35bf307e72bed4f59724762dde4a12965abcea92"}, {"id": "593d6fbab385716dc0a12f3fc95133e8b7479b37", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 29 Apr 2014 20:05:19 -0500", "date_ISO_8601": "2014-04-29 20:05:19 -0500", "relative_date": "12 years ago", "message_subject": "initial commit with phylografter files from 29 Apr, 2014"}]}