{"sha": "6bed60428352c04d00341ad513a8efb9442e4d8a", "data": {"nexml": {"@generator": "Phylografter nexml-json exporter", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "validator of NexSON constraints as well as constraints that would allow a study to be imported into the Open Tree of Life's phylogenetic synthesis tools", "@id": "peyotl-validator", "@name": "validate_ot_nexson.py", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": ["--embed", "--agent-only"], "otherProperty": [{"name": "pythonVersion", "value": "2.7.5+"}, {"name": "pythonImplementation", "value": "CPython"}]}}]}, "^ot:annotationEvents": {"annotation": [{"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:ottId"], "refersTo": {"@top": "otus", "@idref": "otu376610", "@otusID": "otus216", "@otuID": "otu376610"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu376567", "otu376575"], "refersTo": {"@top": "otus", "@idref": "otus216", "@otusID": "otus216"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu376568", "otu376573", "otu376605"], "refersTo": {"@top": "otus", "@idref": "otus216", "@otusID": "otus216"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu376569", "otu376576", "otu376577", "otu376581"], "refersTo": {"@top": "otus", "@idref": "otus216", "@otusID": "otus216"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu376571", "otu376582"], "refersTo": {"@top": "otus", "@idref": "otus216", "@otusID": "otus216"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu376572", "otu376591", "otu376602"], "refersTo": {"@top": "otus", "@idref": "otus216", "@otusID": "otus216"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu376574", "otu376585", "otu376589"], "refersTo": {"@top": "otus", "@idref": "otus216", "@otusID": "otus216"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu376578", "otu376580", "otu376593", "otu376599"], "refersTo": {"@top": "otus", "@idref": "otus216", "@otusID": "otus216"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu376579", "otu376603"], "refersTo": {"@top": "otus", "@idref": "otus216", "@otusID": "otus216"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu376586", "otu376597"], "refersTo": {"@top": "otus", "@idref": "otus216", "@otusID": "otus216"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu376587", "otu376604"], "refersTo": {"@top": "otus", "@idref": "otus216", "@otusID": "otus216"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu376588", "otu376592", "otu376594", "otu376596"], "refersTo": {"@top": "otus", "@idref": "otus216", "@otusID": "otus216"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu376595", "otu376598"], "refersTo": {"@top": "otus", "@idref": "otus216", "@otusID": "otus216"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu376600", "otu376601"], "refersTo": {"@top": "otus", "@idref": "otus216", "@otusID": "otus216"}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": ["tree5865"], "^ot:curatorName": "William Wysocki", "^ot:dataDeposit": {"@href": "http://purl.org/phylo/treebase/phylows/study/TB2:S11014"}, "^ot:focalClade": 524077, "^ot:focalCladeOTTTaxonName": "Hedera", "^ot:messages": {"message": []}, "^ot:otusElementOrder": ["otus216"], "^ot:studyId": "pg_216", "^ot:studyPublication": {"@href": "http://dx.doi.org/10.1600/036364411X605100"}, "^ot:studyPublicationReference": "Green, A. F., Ramsey, T. S., & Ramsey, J. (2011). Phylogeny and biogeography of ivies (Hedera spp., Araliaceae), a polyploid complex of woody vines. Systematic Botany, 36(4), 1114-1127.", "^ot:studyYear": 2010, "^ot:tag": ["cpDNA & nrDNA", "ingroup added;"], "^ot:treesElementOrder": ["trees216"], "otusById": {"otus216": {"otuById": {"otu376567": {"^ot:originalLabel": "Hedera maderensis H a11", "^ot:ottId": 28358, "^ot:ottTaxonName": "Hedera maderensis", "^ot:treebaseOTUId": "Tl438445"}, "otu376568": {"^ot:originalLabel": "Hedera pastuchovii H a0", "^ot:ottId": 28352, "^ot:ottTaxonName": "Hedera pastuchovii", "^ot:treebaseOTUId": "Tl438446"}, "otu376569": {"^ot:originalLabel": "Hedera colchica H a4", "^ot:ottId": 631497, "^ot:ottTaxonName": "Hedera colchica", "^ot:treebaseOTUId": "Tl438447"}, "otu376570": {"^ot:originalLabel": "Hedera helix subsp. caucausigena H a1", "^ot:ottId": 402601, "^ot:ottTaxonName": "Hedera caucasigena", "^ot:treebaseOTUId": "Tl438448"}, "otu376571": {"^ot:originalLabel": "Hedera hibernica hibernica b0", "^ot:ottId": 402600, "^ot:ottTaxonName": "Hedera hibernica var. hibernica", "^ot:treebaseOTUId": "Tl438449"}, "otu376572": {"^ot:originalLabel": "Hedera hibernica H b2", "^ot:ottId": 28366, "^ot:ottTaxonName": "Hedera hibernica", "^ot:treebaseOTUId": "Tl438450"}, "otu376573": {"^ot:originalLabel": "Hedera pastuchovii sample2 H a0", "^ot:ottId": 28352, "^ot:ottTaxonName": "Hedera pastuchovii", "^ot:treebaseOTUId": "Tl438451"}, "otu376574": {"^ot:originalLabel": "Hedera maroccana sample2 H a0", "^ot:ottId": 28356, "^ot:ottTaxonName": "Hedera maroccana", "^ot:treebaseOTUId": "Tl438452"}, "otu376575": {"^ot:originalLabel": "Hedera maderensis H a12", "^ot:ottId": 28358, "^ot:ottTaxonName": "Hedera maderensis", "^ot:treebaseOTUId": "Tl438453"}, "otu376576": {"^ot:originalLabel": "Hedera colchica H a0", "^ot:ottId": 631497, "^ot:ottTaxonName": "Hedera colchica", "^ot:treebaseOTUId": "Tl438454"}, "otu376577": {"^ot:originalLabel": "Hedera colchica H a3", "^ot:ottId": 631497, "^ot:ottTaxonName": "Hedera colchica", "^ot:treebaseOTUId": "Tl438455"}, "otu376578": {"^ot:originalLabel": "Hedera algeriensis H a9", "^ot:ottId": 601520, "^ot:ottTaxonName": "Hedera algeriensis", "^ot:treebaseOTUId": "Tl438456"}, "otu376579": {"^ot:originalLabel": "Hedera rhombea Pierot a5", "^ot:ottId": 549542, "^ot:ottTaxonName": "Hedera rhombea", "^ot:treebaseOTUId": "Tl438457"}, "otu376580": {"^ot:originalLabel": "Hedera algeriensis H a10", "^ot:ottId": 601520, "^ot:ottTaxonName": "Hedera algeriensis", "^ot:treebaseOTUId": "Tl438458"}, "otu376581": {"^ot:originalLabel": "Hedera colchica H a8", "^ot:ottId": 631497, "^ot:ottTaxonName": "Hedera colchica", "^ot:treebaseOTUId": "Tl438459"}, "otu376582": {"^ot:originalLabel": "Hedera hibernica hibernica b3", "^ot:ottId": 402600, "^ot:ottTaxonName": "Hedera hibernica var. hibernica", "^ot:treebaseOTUId": "Tl438460"}, "otu376583": {"^ot:originalLabel": "Hedera nepalensis var sinensis H a0", "^ot:ottId": 106011, "^ot:ottTaxonName": "Hedera nepalensis var. sinensis", "^ot:treebaseOTUId": "Tl438461"}, "otu376584": {"^ot:originalLabel": "Hedera cypria H a0", "^ot:ottId": 28364, "^ot:ottTaxonName": "Hedera cypria", "^ot:treebaseOTUId": "Tl438462"}, "otu376585": {"^ot:originalLabel": "Hedera maroccana S2 H b1", "^ot:ottId": 28356, "^ot:ottTaxonName": "Hedera maroccana", "^ot:treebaseOTUId": "Tl438463"}, "otu376586": {"^ot:originalLabel": "Fatsia japonica F6FR", "^ot:ottId": 11194, "^ot:ottTaxonName": "Fatsia japonica", "^ot:treebaseOTUId": "Tl438464"}, "otu376587": {"^ot:originalLabel": "Polyscias fruticosa C8FR", "^ot:ottId": 480778, "^ot:ottTaxonName": "Polyscias fruticosa", "^ot:treebaseOTUId": "Tl438465"}, "otu376588": {"^ot:originalLabel": "Hedera helix Baltica b0", "^ot:ottId": 524074, "^ot:ottTaxonName": "Hedera helix", "^ot:treebaseOTUId": "Tl438466"}, "otu376589": {"^ot:originalLabel": "Hedera maroccana H a0", "^ot:ottId": 28356, "^ot:ottTaxonName": "Hedera maroccana", "^ot:treebaseOTUId": "Tl438467"}, "otu376590": {"^ot:originalLabel": "Trevesia sundaica F10FR", "^ot:ottId": 42190, "^ot:ottTaxonName": "Trevesia sundaica", "^ot:treebaseOTUId": "Tl438468"}, "otu376591": {"^ot:originalLabel": "Hedera hibernica H b0", "^ot:ottId": 28366, "^ot:ottTaxonName": "Hedera hibernica", "^ot:treebaseOTUId": "Tl438469"}, "otu376592": {"^ot:originalLabel": "Hedera helix Emerald Gem a6", "^ot:ottId": 524074, "^ot:ottTaxonName": "Hedera helix", "^ot:treebaseOTUId": "Tl438470"}, "otu376593": {"^ot:originalLabel": "Hedera algeriensis H a0", "^ot:ottId": 601520, "^ot:ottTaxonName": "Hedera algeriensis", "^ot:treebaseOTUId": "Tl438471"}, "otu376594": {"^ot:originalLabel": "Hedera helix Baltica a0", "^ot:ottId": 524074, "^ot:ottTaxonName": "Hedera helix", "^ot:treebaseOTUId": "Tl438472"}, "otu376595": {"^ot:originalLabel": "Brassaia actinophylla F12FR", "^ot:ottId": 1064021, "^ot:ottTaxonName": "Schefflera actinophylla", "^ot:treebaseOTUId": "Tl438473"}, "otu376596": {"^ot:originalLabel": "Hedera helix Emerald Gem b0", "^ot:ottId": 524074, "^ot:ottTaxonName": "Hedera helix", "^ot:treebaseOTUId": "Tl438474"}, "otu376597": {"^ot:originalLabel": "Fatsia japonica C6FR", "^ot:ottId": 11194, "^ot:ottTaxonName": "Fatsia japonica", "^ot:treebaseOTUId": "Tl438475"}, "otu376598": {"^ot:originalLabel": "Brassaia actinophylla C11FR", "^ot:ottId": 1064021, "^ot:ottTaxonName": "Schefflera actinophylla", "^ot:treebaseOTUId": "Tl438476"}, "otu376599": {"^ot:originalLabel": "Hedera algeriensis H a2", "^ot:ottId": 601520, "^ot:ottTaxonName": "Hedera algeriensis", "^ot:treebaseOTUId": "Tl438477"}, "otu376600": {"^ot:originalLabel": "Hedera azorica Pico b0", "^ot:ottId": 28371, "^ot:ottTaxonName": "Hedera azorica", "^ot:treebaseOTUId": "Tl438478"}, "otu376601": {"^ot:originalLabel": "Hedera azorica Sao Miguel a0", "^ot:ottId": 28371, "^ot:ottTaxonName": "Hedera azorica", "^ot:treebaseOTUId": "Tl438479"}, "otu376602": {"^ot:originalLabel": "Hedera hibernica H b4", "^ot:ottId": 28366, "^ot:ottTaxonName": "Hedera hibernica", "^ot:treebaseOTUId": "Tl438480"}, "otu376603": {"^ot:originalLabel": "Hedera rhombea H a5", "^ot:ottId": 549542, "^ot:ottTaxonName": "Hedera rhombea", "^ot:treebaseOTUId": "Tl438481"}, "otu376604": {"^ot:originalLabel": "Polyscias fruticosa G8FR", "^ot:ottId": 480778, "^ot:ottTaxonName": "Polyscias fruticosa", "^ot:treebaseOTUId": "Tl438482"}, "otu376605": {"^ot:originalLabel": "Hedera pastuchovii sample2 H a7", "^ot:ottId": 28352, "^ot:ottTaxonName": "Hedera pastuchovii", "^ot:treebaseOTUId": "Tl438483"}, "otu376606": {"^ot:originalLabel": "Hedera helix caucasigena", "^ot:ottId": 402601, "^ot:ottTaxonName": "Hedera caucasigena", "^ot:treebaseOTUId": "Tl438484"}, "otu376607": {"^ot:originalLabel": "Hedera algeriensis", "^ot:ottId": 601520, "^ot:ottTaxonName": "Hedera algeriensis", "^ot:treebaseOTUId": "Tl438485"}, "otu376608": {"^ot:originalLabel": "Hedera pastuchovii 1", "^ot:ottId": 28352, "^ot:ottTaxonName": "Hedera pastuchovii", "^ot:treebaseOTUId": "Tl438486"}, "otu376609": {"^ot:originalLabel": "Trevesia sundaica", "^ot:ottId": 42190, "^ot:ottTaxonName": "Trevesia sundaica", "^ot:treebaseOTUId": "Tl438487"}, "otu376610": {"^ot:originalLabel": "Brassaia actinophylla", "^ot:treebaseOTUId": "Tl438488"}, "otu376611": {"^ot:originalLabel": "Hedera cypria", "^ot:ottId": 28364, "^ot:ottTaxonName": "Hedera cypria", "^ot:treebaseOTUId": "Tl438489"}, "otu376612": {"^ot:originalLabel": "Hedera maderensis", "^ot:ottId": 28358, "^ot:ottTaxonName": "Hedera maderensis", "^ot:treebaseOTUId": "Tl438490"}, "otu376613": {"^ot:originalLabel": "Hedera colchica", "^ot:ottId": 631497, "^ot:ottTaxonName": "Hedera colchica", "^ot:treebaseOTUId": "Tl438491"}, "otu376614": {"^ot:originalLabel": "Hedera nepalensis Sinensis", "^ot:ottId": 106011, "^ot:ottTaxonName": "Hedera nepalensis var. sinensis", "^ot:treebaseOTUId": "Tl438492"}, "otu376615": {"^ot:originalLabel": "Fatsia japonica", "^ot:ottId": 11194, "^ot:ottTaxonName": "Fatsia japonica", "^ot:treebaseOTUId": "Tl438493"}, "otu376616": {"^ot:originalLabel": "Hedera helix rhizomatifera", "^ot:ottId": 1076259, "^ot:ottTaxonName": "Hedera helix subsp. rhizomatifera", "^ot:treebaseOTUId": "Tl438494"}, "otu376617": {"^ot:originalLabel": "Hedera rhombea Pierot", "^ot:ottId": 549542, "^ot:ottTaxonName": "Hedera rhombea", "^ot:treebaseOTUId": "Tl438495"}, "otu376618": {"^ot:originalLabel": "Hedera canariensis", "^ot:ottId": 28373, "^ot:ottTaxonName": "Hedera canariensis", "^ot:treebaseOTUId": "Tl438496"}, "otu376619": {"^ot:originalLabel": "Hedera azorica SaoMiguel", "^ot:ottId": 28371, "^ot:ottTaxonName": "Hedera azorica", "^ot:treebaseOTUId": "Tl438497"}, "otu376620": {"^ot:originalLabel": "Hedera nepalensis", "^ot:ottId": 28350, "^ot:ottTaxonName": "Hedera nepalensis", "^ot:treebaseOTUId": "Tl438498"}, "otu376621": {"^ot:originalLabel": "Hedera helix NCinvasive", "^ot:ottId": 524074, "^ot:ottTaxonName": "Hedera helix", "^ot:treebaseOTUId": "Tl438499"}, "otu376622": {"^ot:originalLabel": "Hedera hibernica WAinvasive2", "^ot:ottId": 28366, "^ot:ottTaxonName": "Hedera hibernica", "^ot:treebaseOTUId": "Tl438500"}, "otu376623": {"^ot:originalLabel": "Hedera iberica", "^ot:ottId": 28360, "^ot:ottTaxonName": "Hedera iberica", "^ot:treebaseOTUId": "Tl438501"}, "otu376624": {"^ot:originalLabel": "Hedera algeriensis CAinvasive", "^ot:ottId": 601520, "^ot:ottTaxonName": "Hedera algeriensis", "^ot:treebaseOTUId": "Tl438502"}, "otu376625": {"^ot:originalLabel": "Hedera maroccana SpanishCanary", "^ot:ottId": 28356, "^ot:ottTaxonName": "Hedera maroccana", "^ot:treebaseOTUId": "Tl438503"}, "otu376626": {"^ot:originalLabel": "Hedera hibernica hibernica", "^ot:ottId": 402600, "^ot:ottTaxonName": "Hedera hibernica var. hibernica", "^ot:treebaseOTUId": "Tl438504"}, "otu376627": {"^ot:originalLabel": "Hedera helix CAinvasive", "^ot:ottId": 524074, "^ot:ottTaxonName": "Hedera helix", "^ot:treebaseOTUId": "Tl438505"}, "otu376628": {"^ot:originalLabel": "Schefflera sp", "^ot:ottId": 383681, "^ot:ottTaxonName": "Schefflera", "^ot:treebaseOTUId": "Tl438506"}, "otu376629": {"^ot:originalLabel": "Polyscias fruticosa", "^ot:ottId": 480778, "^ot:ottTaxonName": "Polyscias fruticosa", "^ot:treebaseOTUId": "Tl438507"}, "otu376630": {"^ot:originalLabel": "Hedera helix MDinvasive", "^ot:ottId": 524074, "^ot:ottTaxonName": "Hedera helix", "^ot:treebaseOTUId": "Tl438508"}, "otu376631": {"^ot:originalLabel": "Hedera hibernica WAinvasive1", "^ot:ottId": 28366, "^ot:ottTaxonName": "Hedera hibernica", "^ot:treebaseOTUId": "Tl438509"}, "otu376632": {"^ot:originalLabel": "Hedera maroccana", "^ot:ottId": 28356, "^ot:ottTaxonName": "Hedera maroccana", "^ot:treebaseOTUId": "Tl438510"}, "otu376633": {"^ot:originalLabel": "Hedera rhombea", "^ot:ottId": 549542, "^ot:ottTaxonName": "Hedera rhombea", "^ot:treebaseOTUId": "Tl438511"}, "otu376634": {"^ot:originalLabel": "Hedera helix Baltica", "^ot:ottId": 524074, "^ot:ottTaxonName": "Hedera helix", "^ot:treebaseOTUId": "Tl438512"}, "otu376635": {"^ot:originalLabel": "Hedera azorica Pico", "^ot:ottId": 28371, "^ot:ottTaxonName": "Hedera azorica", "^ot:treebaseOTUId": "Tl438513"}, "otu376636": {"^ot:originalLabel": "Hedera helix EmeraldGem", "^ot:ottId": 524074, "^ot:ottTaxonName": "Hedera helix", "^ot:treebaseOTUId": "Tl438514"}, "otu376637": {"^ot:originalLabel": "Hedera pastuchovii 2", "^ot:ottId": 28352, "^ot:ottTaxonName": "Hedera pastuchovii", "^ot:treebaseOTUId": "Tl438515"}}}}, "treesById": {"trees216": {"@otus": "otus216", "^ot:treeElementOrder": ["tree5865"], "treeById": {"tree5865": {"@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "", "^ot:branchLengthTimeUnit": "", "^ot:curatedType": "PAUP 1", "^ot:inGroupClade": "node999128", "^ot:outGroupEdge": "", "^ot:rootNodeId": "node999124", "^ot:specifiedRoot": "node999124", "^ot:tag": [], "^ot:unrootedTree": false, "edgeBySourceId": {"node999124": {"edge999125": {"@source": "node999124", "@target": "node999125"}, "edge999198": {"@length": 20.0, "@source": "node999124", "@target": "node999198"}}, "node999125": {"edge999126": {"@length": 1.0, "@source": "node999125", "@target": "node999126"}, "edge999195": {"@source": "node999125", "@target": "node999195"}}, "node999126": {"edge999127": {"@length": 2.0, "@source": "node999126", "@target": "node999127"}, "edge999192": {"@length": 15.0, "@source": "node999126", "@target": "node999192"}}, "node999127": {"edge999128": {"@length": 12.0, "@source": "node999127", "@target": "node999128"}, "edge999191": {"@length": 7.0, "@source": "node999127", "@target": "node999191"}}, "node999128": {"edge999129": {"@source": "node999128", "@target": "node999129"}, "edge999190": {"@length": 1.0, "@source": "node999128", "@target": "node999190"}}, "node999129": {"edge999130": {"@source": "node999129", "@target": "node999130"}, "edge999173": {"@length": 1.0, "@source": "node999129", "@target": "node999173"}}, "node999130": {"edge999131": {"@source": "node999130", "@target": "node999131"}, "edge999132": {"@source": "node999130", "@target": "node999132"}}, "node999132": {"edge999133": {"@source": "node999132", "@target": "node999133"}, "edge999134": {"@source": "node999132", "@target": "node999134"}}, "node999134": {"edge999135": {"@source": "node999134", "@target": "node999135"}, "edge999136": {"@source": "node999134", "@target": "node999136"}}, "node999136": {"edge999137": {"@source": "node999136", "@target": "node999137"}, "edge999138": {"@source": "node999136", "@target": "node999138"}}, "node999138": {"edge999139": {"@source": "node999138", "@target": "node999139"}, "edge999140": {"@source": "node999138", "@target": "node999140"}}, "node999140": {"edge999141": {"@source": "node999140", "@target": "node999141"}, "edge999142": {"@source": "node999140", "@target": "node999142"}}, "node999142": {"edge999143": {"@source": "node999142", "@target": "node999143"}, "edge999144": {"@source": "node999142", "@target": "node999144"}}, "node999144": {"edge999145": {"@source": "node999144", "@target": "node999145"}, "edge999146": {"@source": "node999144", "@target": "node999146"}}, "node999146": {"edge999147": {"@source": "node999146", "@target": "node999147"}, "edge999148": {"@source": "node999146", "@target": "node999148"}}, "node999148": {"edge999149": {"@source": "node999148", "@target": "node999149"}, "edge999150": {"@source": "node999148", "@target": "node999150"}}, "node999150": {"edge999151": {"@length": 1.0, "@source": "node999150", "@target": "node999151"}, "edge999152": {"@source": "node999150", "@target": "node999152"}}, "node999152": {"edge999153": {"@source": "node999152", "@target": "node999153"}, "edge999170": {"@length": 1.0, "@source": "node999152", "@target": "node999170"}}, "node999153": {"edge999154": {"@source": "node999153", "@target": "node999154"}, "edge999169": {"@length": 1.0, "@source": "node999153", "@target": "node999169"}}, "node999154": {"edge999155": {"@source": "node999154", "@target": "node999155"}, "edge999168": {"@length": 1.0, "@source": "node999154", "@target": "node999168"}}, "node999155": {"edge999156": {"@source": "node999155", "@target": "node999156"}, "edge999163": {"@source": "node999155", "@target": "node999163"}}, "node999156": {"edge999157": {"@source": "node999156", "@target": "node999157"}, "edge999160": {"@length": 1.0, "@source": "node999156", "@target": "node999160"}}, "node999157": {"edge999158": {"@length": 1.0, "@source": "node999157", "@target": "node999158"}, "edge999159": {"@length": 1.0, "@source": "node999157", "@target": "node999159"}}, "node999160": {"edge999161": {"@source": "node999160", "@target": "node999161"}, "edge999162": {"@length": 1.0, "@source": "node999160", "@target": "node999162"}}, "node999163": {"edge999164": {"@length": 2.0, "@source": "node999163", "@target": "node999164"}, "edge999165": {"@length": 2.0, "@source": "node999163", "@target": "node999165"}}, "node999165": {"edge999166": {"@source": "node999165", "@target": "node999166"}, "edge999167": {"@length": 1.0, "@source": "node999165", "@target": "node999167"}}, "node999170": {"edge999171": {"@source": "node999170", "@target": "node999171"}, "edge999172": {"@source": "node999170", "@target": "node999172"}}, "node999173": {"edge999174": {"@source": "node999173", "@target": "node999174"}, "edge999185": {"@source": "node999173", "@target": "node999185"}}, "node999174": {"edge999175": {"@source": "node999174", "@target": "node999175"}, "edge999184": {"@source": "node999174", "@target": "node999184"}}, "node999175": {"edge999176": {"@source": "node999175", "@target": "node999176"}, "edge999183": {"@source": "node999175", "@target": "node999183"}}, "node999176": {"edge999177": {"@source": "node999176", "@target": "node999177"}, "edge999182": {"@source": "node999176", "@target": "node999182"}}, "node999177": {"edge999178": {"@source": "node999177", "@target": "node999178"}, "edge999181": {"@source": "node999177", "@target": "node999181"}}, "node999178": {"edge999179": {"@source": "node999178", "@target": "node999179"}, "edge999180": {"@length": 1.0, "@source": "node999178", "@target": "node999180"}}, "node999185": {"edge999186": {"@length": 1.0, "@source": "node999185", "@target": "node999186"}, "edge999187": {"@length": 1.0, "@source": "node999185", "@target": "node999187"}}, "node999187": {"edge999188": {"@source": "node999187", "@target": "node999188"}, "edge999189": {"@length": 2.0, "@source": "node999187", "@target": "node999189"}}, "node999192": {"edge999193": {"@source": "node999192", "@target": "node999193"}, "edge999194": {"@source": "node999192", "@target": "node999194"}}, "node999195": {"edge999196": {"@length": 2.0, "@source": "node999195", "@target": "node999196"}, "edge999197": {"@length": 1.0, "@source": "node999195", "@target": "node999197"}}, "node999198": {"edge999199": {"@source": "node999198", "@target": "node999199"}, "edge999200": {"@length": 1.0, "@source": "node999198", "@target": "node999200"}}}, "nodeById": {"node999124": {"@root": true}, "node999125": {}, "node999126": {}, "node999127": {}, "node999128": {}, "node999129": {}, "node999130": {}, "node999131": {"@otu": "otu376593"}, "node999132": {}, "node999133": {"@otu": "otu376601"}, "node999134": {}, "node999135": {"@otu": "otu376576"}, "node999136": {}, "node999137": {"@otu": "otu376584"}, "node999138": {}, "node999139": {"@otu": "otu376594"}, "node999140": {}, "node999141": {"@otu": "otu376589"}, "node999142": {}, "node999143": {"@otu": "otu376574"}, "node999144": {}, "node999145": {"@otu": "otu376583"}, "node999146": {}, "node999147": {"@otu": "otu376568"}, "node999148": {}, "node999149": {"@otu": "otu376573"}, "node999150": {}, "node999151": {"@otu": "otu376570"}, "node999152": {}, "node999153": {}, "node999154": {}, "node999155": {}, "node999156": {}, "node999157": {}, "node999158": {"@otu": "otu376599"}, "node999159": {"@otu": "otu376569"}, "node999160": {}, "node999161": {"@otu": "otu376567"}, "node999162": {"@otu": "otu376575"}, "node999163": {}, "node999164": {"@otu": "otu376581"}, "node999165": {}, "node999166": {"@otu": "otu376578"}, "node999167": {"@otu": "otu376580"}, "node999168": {"@otu": "otu376592"}, "node999169": {"@otu": "otu376605"}, "node999170": {}, "node999171": {"@otu": "otu376603"}, "node999172": {"@otu": "otu376579"}, "node999173": {}, "node999174": {}, "node999175": {}, "node999176": {}, "node999177": {}, "node999178": {}, "node999179": {"@otu": "otu376600"}, "node999180": {"@otu": "otu376585"}, "node999181": {"@otu": "otu376596"}, "node999182": {"@otu": "otu376588"}, "node999183": {"@otu": "otu376591"}, "node999184": {"@otu": "otu376571"}, "node999185": {}, "node999186": {"@otu": "otu376582"}, "node999187": {}, "node999188": {"@otu": "otu376572"}, "node999189": {"@otu": "otu376602"}, "node999190": {"@otu": "otu376577"}, "node999191": {"@otu": "otu376586"}, "node999192": {}, "node999193": {"@otu": "otu376598"}, "node999194": {"@otu": "otu376595"}, "node999195": {}, "node999196": {"@otu": "otu376597"}, "node999197": {"@otu": "otu376590"}, "node999198": {}, "node999199": {"@otu": "otu376587"}, "node999200": {"@otu": "otu376604"}}}}}}}}, "branch2sha": {"master": "6bed60428352c04d00341ad513a8efb9442e4d8a"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "d33fb39501605772a074dffc82affa5344ea9a94", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Wed, 11 Jun 2014 22:18:34 -0500", "date_ISO_8601": "2014-06-11 22:18:34 -0500", "relative_date": "12 years ago", "message_subject": "corrected study ids"}, {"id": "f8a738aeda20a73750847484e110a85c7a3e0a12", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 10 Jun 2014 23:36:42 -0500", "date_ISO_8601": "2014-06-10 23:36:42 -0500", "relative_date": "12 years ago", "message_subject": "Migrating info from gcmdr to nexsons", "message_body": "using peyotl d69c8b180fce7703c7203a0b51712eab57e2988c\ndev/decorate_pg_studies_with_gcmdr_info.py\nto set:\n  ^ot:candidateTreeForSynthesis\n  ^ot:specifiedRoot, and\n  ^ot:unrootedTree\nproperties based on the use of the trees for synthesis study\nlists in gcmdr commit 35bf307e72bed4f59724762dde4a12965abcea92"}, {"id": "593d6fbab385716dc0a12f3fc95133e8b7479b37", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 29 Apr 2014 20:05:19 -0500", "date_ISO_8601": "2014-04-29 20:05:19 -0500", "relative_date": "12 years ago", "message_subject": "initial commit with phylografter files from 29 Apr, 2014"}]}