#NEXUS BEGIN TAXA; Dimensions NTax = 234; TaxLabels Rhynchocephalia Squamata Aves Crocodylidae 'Pelomedusa subrufa' 'Pelusios sinuatus' 'Pelusios gabonensis' 'Pelusios subniger' 'Pelusios williamsi' 'Peltocephalus dumeriliana' 'Erymnochelys madagascariensis' 'Podocnemis expansa' 'Podocnemis vogli' 'Podocnemis sextuberculata' 'Podocnemis unifilis' 'Podocnemis erythrocephala' 'Podocnemis lewyana' 'Pseudemydura umbrina' 'Chelodina rugosa' 'Chelodina longicollis' 'Chelodina oblonga' 'Elseya purvisi' 'Elusor macrurus' 'Emydura subglobosa' 'Elseya dentata' 'Rheodytes leukops' 'Emydura macquarii' 'Elseya georgesi' 'Elseya latisternum' 'Hydromedusa tectifera' 'Chelus fimbriatus' 'Mesoclemmys gibba' 'Mesoclemmys nasutus' 'Mesoclemmys hogei' 'Phrynops williamsi' 'Phrynops geoffroanus' 'Phrynops hilarii' 'Platemys platycephala' 'Acanthochelys radiolata' 'Acanthochelys pallidipectoris' 'Acanthochelys macrocephala' 'Acanthochelys spixii' 'Carettochelys insculpta' 'Lissemys punctata' 'Lissemys scutata' 'Cyclanorbis elegans' 'Cyclanorbis senegalensis' 'Cycloderma aubryi' 'Cycloderma frenatum' 'Trionyx triunguis' 'Pelochelys bibroni' 'Pelochelys cantorii' 'Chitra vandijki' 'Chitra chitra' 'Chitra indica' 'Rafetus euphraticus' 'Apalone mutica' 'Apalone ferox' 'Apalone spinifera' 'Pelodiscus axenaria' 'Pelodiscus sinensis' 'Palea steindachneri' 'Dogania subplana' 'Amyda cartilaginea' 'Nilssonia hurum' 'Nilssonia nigricans' 'Nilssonia formosa' 'Nilssonia gangeticus' 'Nilssonia leithii' 'Chelydra serpentina' 'Macrochelys temminckii' 'Dermatemys mawii' 'Staurotypus triporcatus' 'Kinosternon flavescens' 'Kinosternon baurii' 'Sternotherus odoratus' 'Dermochelys coriacea' 'Chelonia mydas' 'Natator depressus' 'Eretmochelys imbricata' 'Caretta caretta' 'Lepidochelys kempii' 'Lepidochelys olivacea' 'Platysternon megacephalum' 'Glyptemys insculpta' 'Glyptemys muhlenbergii' 'Emys marmorata' 'Emydoidea blandingii' 'Emys orbicularis' 'Emys trinacris' 'Clemmys guttata' 'Terrapene carolina' 'Terrapene coahuila' 'Terrapene nelsoni' 'Terrapene ornata' 'Deirochelys reticularia' 'Chrysemys picta' 'Pseudemys concinna' 'Pseudemys nelsoni' 'Pseudemys peninsularis' 'Pseudemys gorzugi' 'Pseudemys suwanniensis' 'Pseudemys alabamensis' 'Pseudemys rubriventris' 'Pseudemys texana' 'Trachemys dorbigni' 'Trachemys gaigeae' 'Trachemys scripta' 'Trachemys decussata' 'Trachemys stejnegeri' 'Trachemys decorata' 'Trachemys terrapen' 'Malaclemys terrapin' 'Graptemys geographica' 'Graptemys barbouri' 'Graptemys pulchra' 'Graptemys pseudogeographica' 'Graptemys nigrinoda' 'Graptemys ouachitensis' 'Graptemys caglei' 'Graptemys oculifera' 'Graptemys flavimaculata' 'Graptemys versa' 'Manouria emys' 'Manouria impressa' 'Gopherus agassizii' 'Gopherus berlandieri' 'Gopherus flavomarginatus' 'Gopherus polyphemus' 'Malacochersus tornieri' 'Indotestudo forstenii' 'Indotestudo elongata' 'Indotestudo travancorica' 'Testudo horsfieldii' 'Testudo hermanni' 'Testudo graeca' 'Testudo kleinmanni' 'Testudo marginata' 'Chersina angulata' 'Homopus boulengeri' 'Homopus signatus' 'Homopus areolatus' 'Homopus femoralis' 'Psammobates pardalis' 'Psammobates tentorius' 'Psammobates geometricus' 'Psammobates oculifer' 'Pyxis arachnoides' 'Pyxis planicauda' 'Astrochelys radiata' 'Astrochelys yniphora' 'Dipsochelys dussumieri' 'Dipsochelys arnoldi' 'Dipsochelys hololissa' 'Geochelone sulcata' 'Geochelone elegans' 'Geochelone platynota' 'Chelonoidis nigra' 'Chelonoidis chilensis' 'Chelonoidis carbonaria' 'Chelonoidis denticulata' 'Kinixys homeana' 'Kinixys erosa' 'Kinixys natalensis' 'Kinixys belliana' 'Kinixys spekii' 'Rhinoclemmys nasuta' 'Rhinoclemmys rubida' 'Rhinoclemmys annulata' 'Rhinoclemmys pulcherrima' 'Rhinoclemmys areolata' 'Rhinoclemmys diademata' 'Rhinoclemmys punctularia' 'Rhinoclemmys funerea' 'Rhinoclemmys melanosterna' 'Geoemyda japonica' 'Geoemyda spengleri' 'Siebenrockiella crassicollis' 'Siebenrockiella leytensis' 'Malayemys subtrijuga' 'Orlitia borneensis' 'Geoclemys hamiltonii' 'Morenia ocellata' 'Kachuga sylhetensis' 'Pangshura tecta' 'Pangshura smithii' 'Pangshura tentoria' 'Hardella thurjii' 'Batagur baska' 'Batagur affinis' 'Kachuga kachuga' 'Kachuga dhongoka' 'Callagur borneoensis' 'Kachuga trivittata' 'Melanochelys trijuga' 'Vijayachelys silvatica' 'Leucocephalon yuwonoi' 'Sacalia bealei' 'Sacalia quadriocellata' 'Heosemys spinosa' 'Heosemys annandalii' 'Heosemys depressa' 'Heosemys grandis' 'Notochelys platynota' 'Cyclemys fusca' 'Cyclemys gemeli' 'Cyclemys oldhamii' 'Cyclemys tcheponensis' 'Cyclemys atripons' 'Cyclemys pulchristriata' 'Cyclemys ovata' 'Cyclemys dentata' 'Cyclemys bellii' 'Cyclemys enigmatica' 'Cuora amboinensis' 'Cuora mouhotii' 'Cuora galbinifrons' 'Cuora mccordi' 'Cuora flavomarginata' 'Cuora yunnanensis' 'Cuora zhoui' 'Cuora pani' 'Cuora aurocapitata' 'Cuora trifasciata' 'Mauremys annamensis' 'Mauremys mutica' 'Mauremys leprosa' 'Mauremys caspica' 'Mauremys rivulata' 'Mauremys japonica' 'Mauremys sinensis' 'Mauremys nigricans' 'Mauremys megalocephala' 'Mauremys reevesii' ; END; BEGIN TREES; Tree tree5096 = ((Rhynchocephalia:0.8870750438,Squamata:0.9028806146):0.0941235703,((Aves:0.6587924775,Crocodylidae:0.9892079156):0.0928963477,((((('Pelomedusa subrufa':0.0934057129,'Pelusios sinuatus':0.2050857853):0.024253949,('Pelusios gabonensis':6.846e-07,('Pelusios subniger':0.0306732055,'Pelusios williamsi':1.4628e-06):0.0542692743):0.0572301781):0.2677813466,('Peltocephalus dumeriliana':0.2616007522,('Erymnochelys madagascariensis':0.3334591497,('Podocnemis expansa':0.0430295921,('Podocnemis vogli':0.1001432944,('Podocnemis sextuberculata':0.0783875962,('Podocnemis unifilis':0.0726914751,('Podocnemis erythrocephala':0.0707525753,'Podocnemis lewyana':0.0744533584):0.0167783075):0.0272383453):0.0080573144):0.0197995829):0.190828824):0.0251792962):0.0917154931):0.1488278477,((('Pseudemydura umbrina':0.1527420654,('Chelodina rugosa':0.0537838047,('Chelodina longicollis':0.0351327814,'Chelodina oblonga':0.0398318523):0.0132224015):0.1002083361):0.0190199956,(('Elseya purvisi':0.0744304493,'Elusor macrurus':0.0663041368):0.024367529,('Emydura subglobosa':0.0563717158,(('Elseya dentata':1e-10,'Rheodytes leukops':7.97e-08):0.0984888201,('Emydura macquarii':0.0400312383,('Elseya georgesi':0.0477038992,'Elseya latisternum':0.0319387186):0.0094005949):0.0209685121):0.0100772828):0.0061016996):0.0543999971):0.0257659913,('Hydromedusa tectifera':0.1465091508,('Chelus fimbriatus':0.1268656125,(('Mesoclemmys gibba':0.038249961,'Mesoclemmys nasutus':0.0086607614):0.081635415,(('Mesoclemmys hogei':0.0836564855,('Phrynops williamsi':0.0139688412,('Phrynops geoffroanus':0.0030194009,'Phrynops hilarii':0.0030788887):0.0114066648):0.1017842):0.0401048876,('Platemys platycephala':0.1171497073,('Acanthochelys radiolata':0.0700988843,('Acanthochelys pallidipectoris':0.0076562049,('Acanthochelys macrocephala':0.0138392477,'Acanthochelys spixii':0.0099541378):0.0052199191):0.0775048846):0.0510165024):0.0265861973):0.0202269161):0.018712251):0.0728729693):0.0246896793):0.0783477732):0.1205628669,(('Carettochelys insculpta':0.3881330289,((('Lissemys punctata':0.0612444454,'Lissemys scutata':0.0807653091):0.0250011702,(('Cyclanorbis elegans':0.0952317101,'Cyclanorbis senegalensis':0.0966501933):0.0188739805,('Cycloderma aubryi':0.0842930951,'Cycloderma frenatum':0.0854386685):0.0377116971):0.025044923):0.1840847416,(('Trionyx triunguis':0.1334015788,(('Pelochelys bibroni':0.0405755035,'Pelochelys cantorii':0.0272720562):0.041958758,('Chitra vandijki':0.0120497996,('Chitra chitra':0.0278707837,'Chitra indica':0.0412268088):0.0058049047):0.0399032475):0.0171847649):0.0263380305,(('Rafetus euphraticus':0.0837079364,('Apalone mutica':0.039641784,('Apalone ferox':0.0298555773,'Apalone spinifera':0.0361078394):0.0137157311):0.0614718101):0.0144341354,(('Pelodiscus axenaria':0.0454223802,'Pelodiscus sinensis':0.0403638013):0.0800254404,('Palea steindachneri':0.1017028941,('Dogania subplana':0.0938370818,('Amyda cartilaginea':0.092410141,(('Nilssonia hurum':0.0341099297,'Nilssonia nigricans':0.0233063257):0.0225264247,('Nilssonia formosa':0.0616204472,('Nilssonia gangeticus':0.046071211,'Nilssonia leithii':0.0380303385):0.0112855819):0.0049105088):0.0230833239):0.0233175248):0.0162995362):0.0104789439):0.0193401966):0.0124811462):0.0385560225):0.1091519535):0.0547015905,((('Chelydra serpentina':0.0806025151,'Macrochelys temminckii':0.0699313337):0.0854362332,('Dermatemys mawii':0.1491781394,('Staurotypus triporcatus':0.0993236228,('Kinosternon flavescens':0.0449035303,('Kinosternon baurii':4.022e-07,'Sternotherus odoratus':2.697e-07):0.0152575413):0.0663771576):0.1042459285):0.0563138027):0.0147782716,(('Dermochelys coriacea':0.0843098339,(('Chelonia mydas':0.0393081517,'Natator depressus':0.0218847863):0.0141949501,('Eretmochelys imbricata':0.0439445214,('Caretta caretta':0.0265237294,('Lepidochelys kempii':0.0042518904,'Lepidochelys olivacea':0.0401133031):0.0365218036):0.0106661975):0.0307246049):0.030809161):0.0349182313,(('Platysternon megacephalum':0.2005037699,((('Glyptemys insculpta':0.0240677153,'Glyptemys muhlenbergii':0.0245158795):0.0141457443,(('Emys marmorata':0.028300805,('Emydoidea blandingii':0.030517312,('Emys orbicularis':0.0117554942,'Emys trinacris':0.0059144169):0.0296927443):0.0072345866):0.0114678469,('Clemmys guttata':0.0493553293,(('Terrapene carolina':0.0200279106,'Terrapene coahuila':0.0184792869):0.0084235896,('Terrapene nelsoni':0.0295767862,'Terrapene ornata':0.0213412148):0.009636833):0.0209981663):0.0081572054):0.0051455613):0.0148645028,('Deirochelys reticularia':0.0935757533,(('Chrysemys picta':0.0374730116,('Pseudemys concinna':0.0015123917,('Pseudemys nelsoni':1e-10,('Pseudemys peninsularis':0.0024432717,('Pseudemys gorzugi':0.00364917,('Pseudemys suwanniensis':0.0034237804,('Pseudemys 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quadriocellata':0.0035556615):0.0625458144):0.0123270619,(('Heosemys spinosa':0.0413111903,('Heosemys annandalii':0.0608821596,('Heosemys depressa':0.0386262779,'Heosemys grandis':0.0403710469):0.0192207601):0.0173136351):0.0151780504,('Notochelys platynota':0.0903518825,(('Cyclemys fusca':0.0229829749,'Cyclemys gemeli':0.0291280536):0.0227283924,(('Cyclemys oldhamii':6.46256e-05,'Cyclemys tcheponensis':0.0071820492):0.0311228768,(('Cyclemys atripons':0.0059369775,'Cyclemys pulchristriata':0.0037766684):0.018602846,('Cyclemys ovata':0.0048841956,('Cyclemys dentata':0.0061792364,('Cyclemys bellii':0.0071133959,'Cyclemys enigmatica':0.001425288):0.0062156227):0.0018832206):0.0093198635):0.0141011293):0.0127673369):0.0243211768):0.0061255077):0.0049698451):0.0217419102,(('Cuora amboinensis':0.059630506,('Cuora mouhotii':0.0439978872,(('Cuora galbinifrons':0.0299414474,'Cuora mccordi':0.036046042):0.0083604873,(('Cuora flavomarginata':0.0342023584,'Cuora yunnanensis':0.0228247185):0.0044268692,('Cuora zhoui':0.0085307104,('Cuora pani':0.0123637218,('Cuora aurocapitata':0.0139004216,'Cuora trifasciata':0.0051649146):0.0082264823):0.0044219434):0.0095102023):0.0099977131):0.0035654416):0.0041765231):0.0187290397,(('Mauremys annamensis':0.0299569868,'Mauremys mutica':0.0355610077):0.0159070787,('Mauremys leprosa':0.043875897,(('Mauremys caspica':0.0249007339,'Mauremys rivulata':0.0306076721):0.0075086781,(('Mauremys japonica':0.0310992215,'Mauremys sinensis':0.0234390709):0.0042343048,('Mauremys nigricans':0.0195155483,('Mauremys megalocephala':6.05e-08,'Mauremys reevesii':5.81e-08):0.0233488265):0.0039531096):0.0169310074):0.001620659):0.0023444533):0.0155917248):0.0202268336):0.0108939436):0.0104471657):0.0162218928):0.0270647601):0.0494256917):0.0159155732):0.0105284595):0.0624136366):0.0491822392):0.1517676249):0.0941235703); END;