#NEXUS BEGIN TAXA; Dimensions NTax = 720; TaxLabels 'Thermanaerovibrio acidaminovorans' 'Dethiosulfovibrio peptidovorans' 'Escherichia coli O157 H7 str Sakai' 'Escherichia coli str K12 substr MG1655' 'Escherichia coli str K12 substr DH10B' 'Escherichia coli ATCC 8739' 'Escherichia coli HS' 'Escherichia coli 536' 'Escherichia coli APEC O1' 'Shigella flexneri 2a str 301' 'Shigella flexneri 2a str 2457T' 'Shigella flexneri 5 str 8401' 'Shigella boydii CDC 3083 94' 'Shigella boydii Sb227' 'Escherichia coli SMS 3 5' 'Escherichia coli O157 H7 EDL933' 'Escherichia coli CFT073' 'Escherichia coli UTI89' 'Escherichia coli E24377A' 'Shigella dysenteriae Sd197' 'Shigella sonnei Ss046' 'Salmonella enterica subsp enterica serovar Typhi str Ty2' 'Salmonella enterica subsp enterica serovar Typhi str CT18' 'Salmonella typhimurium LT2' 'Salmonella enterica subsp enterica serovar Paratyphi A str ATCC 9150' 'Salmonella enterica subsp enterica serovar Paratyphi B str SPB7' 'Salmonella enterica subsp enterica serovar Choleraesuis str SC B67' 'Salmonella enterica subsp arizonae serovar 62 z4 z23' 'Citrobacter koseri ATCC BAA 895' 'Klebsiella pneumoniae subsp pneumoniae MGH 78578' 'Enterobacter sakazakii ATCC BAA 894' 'Enterobacter sp 638' 'Erwinia tasmaniensis' 'Serratia proteamaculans 568' 'Erwinia carotovora subsp atroseptica SCRI1043' 'Yersinia pestis KIM' 'Yersinia pseudotuberculosis IP 31758' 'Yersinia pestis CO92' 'Yersinia pseudotuberculosis IP 32953' 'Yersinia pseudotuberculosis PB1' 'Yersinia pestis Pestoides F' 'Yersinia pseudotuberculosis YPIII' 'Yersinia pestis Nepal516' 'Yersinia pestis Antiqua' 'Yersinia pestis biovar Microtus str 91001' 'Yersinia pestis Angola' 'Yersinia enterocolitica subsp enterocolitica 8081' 'Candidatus Blochmannia pennsylvanicus str BPEN' 'Candidatus Blochmannia floridanus' 'Buchnera aphidicola str APS Acyrthosiphon pisum' 'Buchnera aphidicola str Sg Schizaphis graminum' 'Buchnera aphidicola str Bp Baizongia pistaciae' 'Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis' 'Buchnera aphidicola str Cc Cinara cedri' 'Baumannia cicadellinicola str Hc Homalodisca coagulata' 'Sodalis glossinidius str morsitans' 'Photorhabdus luminescens subsp laumondii TTO1' 'Haemophilus somnus 129PT' 'Haemophilus somnus 2336' 'Pasteurella multocida subsp multocida str Pm70' 'Mannheimia succiniciproducens MBEL55E' 'Actinobacillus succinogenes 130Z' 'Haemophilus influenzae Rd KW20' 'Haemophilus influenzae PittGG' 'Haemophilus influenzae 86 028NP' 'Haemophilus influenzae PittEE' 'Actinobacillus pleuropneumoniae L20' 'Actinobacillus pleuropneumoniae serovar 7 str AP76' 'Actinobacillus pleuropneumoniae serovar 3 str JL03' 'Haemophilus ducreyi 35000HP' 'Vibrio cholerae O1 biovar eltor str N16961' 'Vibrio cholerae O395' 'Vibrio vulnificus CMCP6' 'Vibrio vulnificus YJ016' 'Vibrio parahaemolyticus RIMD 2210633' 'Vibrio harveyi ATCC BAA 1116' 'Vibrio fischeri ES114' 'Photobacterium profundum SS9' 'Aeromonas hydrophila subsp hydrophila ATCC 7966' 'Aeromonas salmonicida subsp salmonicida A449' 'Shewanella halifaxensis HAW EB4' 'Shewanella pealeana ATCC 700345' 'Shewanella sediminis HAW EB3' 'Shewanella woodyi ATCC 51908' 'Shewanella loihica PV 4' 'Shewanella sp ANA 3' 'Shewanella sp MR 4' 'Shewanella sp MR 7' 'Shewanella oneidensis MR 1' 'Shewanella sp W3 18 1' 'Shewanella putrefaciens CN 32' 'Shewanella baltica OS155' 'Shewanella baltica OS195' 'Shewanella baltica OS185' 'Shewanella denitrificans OS217' 'Shewanella frigidimarina NCIMB 400' 'Shewanella amazonensis SB2B' 'Psychromonas ingrahamii 37' 'Idiomarina loihiensis L2TR' 'Pseudoalteromonas atlantica T6c' 'Pseudoalteromonas haloplanktis TAC125' 'Colwellia psychrerythraea 34H' 'Kangiella koreensis' 'Acinetobacter baumannii ACICU' 'Acinetobacter baumannii ATCC 17978' 'Acinetobacter baumannii SDF' 'Acinetobacter baumannii AYE' 'Acinetobacter sp ADP1' 'Psychrobacter arcticus 273 4' 'Psychrobacter cryohalolentis K5' 'Psychrobacter sp PRwf 1' 'Alcanivorax borkumensis SK2' 'Chromohalobacter salexigens DSM 3043' 'Marinomonas sp MWYL1' 'Marinobacter aquaeolei VT8' 'Hahella chejuensis KCTC 2396' 'Pseudomonas syringae pv syringae B728a' 'Pseudomonas syringae pv phaseolicola 1448A' 'Pseudomonas syringae pv tomato str DC3000' 'Pseudomonas fluorescens Pf 5' 'Pseudomonas fluorescens PfO 1' 'Pseudomonas putida KT2440' 'Pseudomonas putida F1' 'Pseudomonas putida GB 1' 'Pseudomonas putida W619' 'Pseudomonas entomophila L48' 'Pseudomonas mendocina ymp' 'Pseudomonas stutzeri A1501' 'Pseudomonas aeruginosa PAO1' 'Pseudomonas aeruginosa UCBPP PA14' 'Pseudomonas aeruginosa PA7' 'Saccharophagus degradans 2 40' 'Cellvibrio japonicus Ueda107' 'Legionella pneumophila str Corby' 'Legionella pneumophila subsp pneumophila str Philadelphia 1' 'Legionella pneumophila str Lens' 'Legionella pneumophila str Paris' 'Coxiella burnetii RSA 331' 'Coxiella burnetii RSA 493' 'Coxiella burnetii Dugway 5J108 111' 'Francisella tularensis subsp tularensis SCHU S4' 'Francisella tularensis subsp tularensis FSC198' 'Francisella tularensis subsp tularensis WY96 3418' 'Francisella tularensis subsp holarctica OSU18' 'Francisella tularensis subsp holarctica' 'Francisella tularensis subsp holarctica FTNF002 00' 'Francisella tularensis subsp mediasiatica FSC147' 'Francisella tularensis subsp novicida U112' 'Francisella philomiragia subsp philomiragia ATCC 25017' 'Dichelobacter nodosus VCS1703A' 'Candidatus Ruthia magnifica str Cm Calyptogena magnifica' 'Candidatus Vesicomyosocius okutanii HA' 'Thiomicrospira crunogena XCL 2' 'Halorhodospira halophila SL1' 'Alkalilimnicola ehrlichei MLHE 1' 'Nitrosococcus oceani ATCC 19707' 'Xanthomonas campestris pv campestris str 8004' 'Xanthomonas campestris pv campestris str ATCC 33913' 'Xanthomonas campestris pv campestris' 'Xanthomonas oryzae pv oryzae KACC10331' 'Xanthomonas oryzae pv oryzae MAFF 311018' 'Xanthomonas oryzae pv oryzae PXO99A' 'Xanthomonas campestris pv vesicatoria str 85 10' 'Xanthomonas axonopodis pv citri str 306' 'Stenotrophomonas maltophilia K279a' 'Xylella fastidiosa M23' 'Xylella fastidiosa Temecula1' 'Xylella fastidiosa M12' 'Xylella fastidiosa 9a5c' 'Methylococcus capsulatus str Bath' 'Nitrosomonas europaea ATCC 19718' 'Nitrosomonas eutropha C91' 'Nitrosospira multiformis ATCC 25196' 'Thiobacillus denitrificans ATCC 25259' 'Methylobacillus flagellatus KT' 'Azoarcus sp BH72' 'Azoarcus sp EbN1' 'Dechloromonas aromatica RCB' 'Polynucleobacter sp QLW P1DMWA 1' 'Polynucleobacter necessarius STIR1' 'Cupriavidus taiwanensis' 'Ralstonia eutropha H16' 'Ralstonia eutropha JMP134' 'Ralstonia metallidurans CH34' 'Ralstonia solanacearum GMI1000' 'Ralstonia pickettii 12J' 'Burkholderia phytofirmans PsJN' 'Burkholderia xenovorans LB400' 'Burkholderia phymatum STM815' 'Burkholderia ambifaria AMMD' 'Burkholderia ambifaria MC40 6' 'Burkholderia cenocepacia AU 1054' 'Burkholderia cenocepacia HI2424' 'Burkholderia cenocepacia MC0 3' 'Burkholderia sp 383' 'Burkholderia vietnamiensis G4' 'Burkholderia multivorans ATCC 17616' 'Burkholderia mallei NCTC 10247' 'Burkholderia mallei NCTC 10229' 'Burkholderia mallei ATCC 23344' 'Burkholderia mallei SAVP1' 'Burkholderia pseudomallei K96243' 'Burkholderia pseudomallei 1710b' 'Burkholderia pseudomallei 668' 'Burkholderia pseudomallei 1106a' 'Burkholderia thailandensis E264' 'Herminiimonas arsenicoxydans' 'Janthinobacterium sp Marseille' 'Methylibium petroleiphilum PM1' 'Leptothrix cholodnii SP 6' 'Delftia acidovorans SPH 1' 'Acidovorax sp JS42' 'Acidovorax avenae subsp citrulli AAC00 1' 'Verminephrobacter eiseniae EF01 2' 'Polaromonas naphthalenivorans CJ2' 'Polaromonas sp JS666' 'Rhodoferax ferrireducens T118' 'Bordetella bronchiseptica RB50' 'Bordetella parapertussis 12822' 'Bordetella pertussis Tohama I' 'Bordetella avium 197N' 'Bordetella petrii DSM 12804' 'Neisseria gonorrhoeae FA 1090' 'Neisseria gonorrhoeae NCCP11945' 'Neisseria meningitidis MC58' 'Neisseria meningitidis Z2491' 'Neisseria meningitidis FAM18' 'Neisseria meningitidis 053442' 'Chromobacterium violaceum ATCC 12472' 'Rhizobium etli CIAT 652' 'Rhizobium etli CFN 42' 'Rhizobium leguminosarum bv viciae 3841' 'Agrobacterium tumefaciens str C58' 'Sinorhizobium meliloti 1021' 'Sinorhizobium medicae WSM419' 'Bartonella henselae str Houston 1' 'Bartonella quintana str Toulouse' 'Bartonella tribocorum CIP 105476' 'Bartonella bacilliformis KC583' 'Brucella canis ATCC 23365' 'Brucella suis 1330' 'Brucella suis ATCC 23445' 'Brucella abortus S19' 'Brucella melitensis biovar Abortus 2308' 'Brucella abortus biovar 1 str 9 941' 'Brucella melitensis 16M' 'Brucella ovis ATCC 25840' 'Ochrobactrum anthropi ATCC 49188' 'Mesorhizobium loti MAFF303099' 'Mesorhizobium sp BNC1' 'Methylobacterium extorquens PA1' 'Methylobacterium populi BJ001' 'Methylobacterium radiotolerans JCM 2831' 'Methylobacterium sp 4 46' 'Beijerinckia indica subsp indica ATCC 9039' 'Xanthobacter autotrophicus Py2' 'Azorhizobium caulinodans ORS 571' 'Bradyrhizobium sp ORS278' 'Bradyrhizobium sp BTAi1' 'Bradyrhizobium japonicum USDA 110' 'Rhodopseudomonas palustris TIE 1' 'Rhodopseudomonas palustris CGA009' 'Rhodopseudomonas palustris BisB5' 'Rhodopseudomonas palustris HaA2' 'Rhodopseudomonas palustris BisB18' 'Rhodopseudomonas palustris BisA53' 'Nitrobacter winogradskyi Nb 255' 'Nitrobacter hamburgensis X14' 'Parvibaculum lavamentivorans DS 1' 'Maricaulis maris MCS10' 'Hyphomonas neptunium ATCC 15444' 'Caulobacter sp K31' 'Caulobacter crescentus CB15' 'Silicibacter pomeroyi DSS 3' 'Silicibacter sp TM1040' 'Roseobacter denitrificans OCh 114' 'Jannaschia sp CCS1' 'Dinoroseobacter shibae DFL 12' 'Rhodobacter sphaeroides ATCC 17029' 'Rhodobacter sphaeroides 2 4 1' 'Rhodobacter sphaeroides ATCC 17025' 'Paracoccus denitrificans PD1222' 'Novosphingobium aromaticivorans DSM 12444' 'Erythrobacter litoralis HTCC2594' 'Sphingopyxis alaskensis RB2256' 'Sphingomonas wittichii RW1' 'Zymomonas mobilis subsp mobilis ZM4' 'Rhodospirillum rubrum ATCC 11170' 'Magnetospirillum magneticum AMB 1' 'Gluconobacter oxydans 621H' 'Gluconacetobacter diazotrophicus PAl 5' 'Granulibacter bethesdensis CGDNIH1' 'Acidiphilium cryptum JF 5' 'Rickettsia bellii RML369 C' 'Rickettsia bellii OSU 85 389' 'Rickettsia typhi str Wilmington' 'Rickettsia prowazekii str Madrid E' 'Rickettsia felis URRWXCal2' 'Rickettsia akari str Hartford' 'Rickettsia rickettsii str Iowa' 'Rickettsia rickettsii str Sheila Smith' 'Rickettsia conorii str Malish 7' 'Rickettsia massiliae MTU5' 'Rickettsia canadensis str McKiel' 'Orientia tsutsugamushi Boryong' 'Orientia tsutsugamushi str Ikeda' 'Anaplasma phagocytophilum HZ' 'Anaplasma marginale str St Maries' 'Ehrlichia ruminantium str Gardel' 'Ehrlichia ruminantium str Welgevonden' 'Ehrlichia canis str Jake' 'Ehrlichia chaffeensis str Arkansas' 'Wolbachia pipientis' 'Wolbachia endosymbiont of Drosophila melanogaster' 'Wolbachia endosymbiont strain TRS of Brugia malayi' 'Neorickettsia sennetsu str Miyayama' 'Candidatus Pelagibacter ubique HTCC1062' 'Magnetococcus sp MC 1' 'Acidobacteria bacterium Ellin345' 'Solibacter usitatus Ellin6076' 'Geobacter sulfurreducens PCA' 'Geobacter metallireducens GS 15' 'Geobacter uraniireducens Rf4' 'Pelobacter propionicus DSM 2379' 'Geobacter lovleyi SZ' 'Pelobacter carbinolicus DSM 2380' 'Desulfovibrio vulgaris subsp vulgaris DP4' 'Desulfovibrio vulgaris subsp vulgaris str Hildenborough' 'Desulfovibrio desulfuricans subsp desulfuricans str G20' 'Lawsonia intracellularis PHE MN1 00' 'Desulfohalobium retbaense' 'Desulfomicrobium baculatum' 'Desulfotalea psychrophila LSv54' 'Desulfococcus oleovorans Hxd3' 'Syntrophobacter fumaroxidans MPOB' 'Syntrophus aciditrophicus SB' 'Sorangium cellulosum So ce 56' 'Haliangium ochraceum' 'Anaeromyxobacter sp Fw109 5' 'Anaeromyxobacter dehalogenans 2CP C' 'Myxococcus xanthus DK 1622' 'Bdellovibrio bacteriovorus HD100' 'Denitrovibrio acetiphilus' 'Sulfurimonas denitrificans DSM 1251' 'Arcobacter butzleri RM4018' 'Sulfurovum sp NBC37 1' 'Campylobacter jejuni subsp jejuni NCTC 11168' 'Campylobacter jejuni RM1221' 'Campylobacter jejuni subsp doylei 269 97' 'Campylobacter jejuni subsp jejuni 81116' 'Campylobacter jejuni subsp jejuni 81 176' 'Campylobacter curvus 525 92' 'Campylobacter concisus 13826' 'Campylobacter fetus subsp fetus 82 40' 'Campylobacter hominis ATCC BAA 381' 'Sulfurospirillum deleyianum' 'Helicobacter pylori HPAG1' 'Helicobacter pylori 26695' 'Helicobacter pylori Shi470' 'Helicobacter pylori J99' 'Helicobacter acinonychis str Sheeba' 'Helicobacter hepaticus ATCC 51449' 'Wolinella succinogenes DSM 1740' 'Nitratiruptor sp SB155 2' 'Aquifex aeolicus VF5' 'Sulfurihydrogenibium sp YO3AOP1' 'Elusimicrobium minutum Pei191' 'Dyadobacter fermentans' 'Spirosoma linguale' 'Cytophaga hutchinsonii ATCC 33406' 'Candidatus Amoebophilus asiaticus 5a2' 'Pedobacter heparinus' 'Chitinophaga pinensis' 'Flavobacterium psychrophilum JIP02 86' 'Flavobacterium johnsoniae UW101' 'Gramella forsetii KT0803' 'Capnocytophaga ochracea' 'Candidatus Sulcia muelleri GWSS' 'Bacteroides fragilis YCH46' 'Bacteroides fragilis NCTC 9343' 'Bacteroides thetaiotaomicron VPI 5482' 'Bacteroides vulgatus ATCC 8482' 'Porphyromonas gingivalis ATCC 33277' 'Porphyromonas gingivalis W83' 'Parabacteroides distasonis ATCC 8503' 'Rhodothermus marinus' 'Salinibacter ruber DSM 13855' 'Chlorobium tepidum TLS' 'Chlorobaculum parvum NCIB 8327' 'Prosthecochloris vibrioformis DSM 265' 'Pelodictyon luteolum DSM 273' 'Chlorobium chlorochromatii CaD3' 'Chlorobium limicola DSM 245' 'Chlorobium phaeobacteroides DSM 266' 'Chlorobium phaeobacteroides BS1' 'Chloroherpeton thalassium ATCC 35110' 'Akkermansia muciniphila ATCC BAA 835' 'Opitutus terrae PB90 1' 'Methylacidiphilum infernorum V4' 'Chlamydia trachomatis D UW 3 CX' 'Chlamydia trachomatis A HAR 13' 'Chlamydia trachomatis 434 Bu' 'Chlamydia trachomatis L2b UCH 1 proctitis' 'Chlamydia muridarum Nigg' 'Chlamydophila abortus S26 3' 'Chlamydophila caviae GPIC' 'Chlamydophila felis Fe C 56' 'Chlamydophila pneumoniae AR39' 'Chlamydophila pneumoniae J138' 'Chlamydophila pneumoniae CWL029' 'Chlamydophila pneumoniae TW 183' 'Candidatus Protochlamydia amoebophila UWE25' 'Rhodopirellula baltica SH 1' 'Planctomyces limnophilus' 'Borrelia afzelii PKo' 'Borrelia garinii PBi' 'Borrelia burgdorferi B31' 'Borrelia hermsii DAH' 'Treponema pallidum subsp pallidum SS14' 'Treponema pallidum subsp pallidum str Nichols' 'Treponema denticola ATCC 35405' 'Brachyspira murdochii' 'Leptospira borgpetersenii serovar Hardjo bovis L550' 'Leptospira borgpetersenii serovar Hardjo bovis JB197' 'Leptospira interrogans serovar Lai str 56601' 'Leptospira interrogans serovar Copenhageni str Fiocruz L1 130' 'Leptospira biflexa serovar Patoc strain Patoc 1 Paris' 'Leptospira biflexa serovar Patoc strain Patoc 1 Ames' 'Mycoplasma hyopneumoniae J' 'Mycoplasma hyopneumoniae 7448' 'Mycoplasma hyopneumoniae 232' 'Mycoplasma synoviae 53' 'Mycoplasma agalactiae PG2' 'Mycoplasma pulmonis UAB CTIP' 'Mycoplasma arthritidis 158L3 1' 'Mycoplasma mobile 163K' 'Ureaplasma parvum serovar 3 str ATCC 700970' 'Ureaplasma parvum serovar 3 str ATCC 27815' 'Mycoplasma penetrans HF 2' 'Mycoplasma pneumoniae M129' 'Mycoplasma genitalium G37' 'Mycoplasma gallisepticum R' 'Mycoplasma mycoides subsp mycoides SC str PG1' 'Mycoplasma capricolum subsp capricolum ATCC 27343' 'Mesoplasma florum L1' 'Onion yellows phytoplasma OY M' 'Aster yellows witches broom phytoplasma AYWB' 'Candidatus Phytoplasma mali' 'Acholeplasma laidlawii PG 8A' 'Streptobacillus moniliformis' 'Leptotrichia buccalis' 'Sebaldella termitidis' 'Fusobacterium nucleatum subsp nucleatum ATCC 25586' 'Desulfitobacterium hafniense Y51' 'Heliobacterium modesticaldum Ice1' 'Moorella thermoacetica ATCC 39073' 'Desulfotomaculum reducens MI 1' 'Desulfotomaculum acetoxidans' 'Pelotomaculum thermopropionicum SI' 'Candidatus Desulforudis audaxviator MP104C' 'Carboxydothermus hydrogenoformans Z 2901' 'Syntrophomonas wolfei subsp wolfei str Goettingen' 'Symbiobacterium thermophilum IAM 14863' 'Natranaerobius thermophilus JW NM WN LF' 'Veillonella parvula' 'Bacillus thuringiensis serovar konkukian str 97 27' 'Bacillus thuringiensis str Al Hakam' 'Bacillus anthracis str Sterne' 'Bacillus anthracis str Ames Ancestor' 'Bacillus anthracis str Ames' 'Bacillus cereus E33L' 'Bacillus cereus ATCC 14579' 'Bacillus weihenstephanensis KBAB4' 'Bacillus cereus ATCC 10987' 'Bacillus cereus subsp cytotoxis NVH 391 98' 'Bacillus subtilis subsp subtilis str 168' 'Bacillus amyloliquefaciens FZB42' 'Bacillus pumilus SAFR 032' 'Bacillus licheniformis ATCC 14580' 'Geobacillus thermodenitrificans NG80 2' 'Geobacillus kaustophilus HTA426' 'Staphylococcus aureus subsp aureus Mu3' 'Staphylococcus aureus subsp aureus Mu50' 'Staphylococcus aureus subsp aureus N315' 'Staphylococcus aureus subsp aureus JH9' 'Staphylococcus aureus subsp aureus JH1' 'Staphylococcus aureus subsp aureus MRSA252' 'Staphylococcus aureus RF122' 'Staphylococcus aureus subsp aureus NCTC 8325' 'Staphylococcus aureus subsp aureus USA300 TCH1516' 'Staphylococcus aureus subsp aureus USA300' 'Staphylococcus aureus subsp aureus COL' 'Staphylococcus aureus subsp aureus str Newman' 'Staphylococcus aureus subsp aureus MSSA476' 'Staphylococcus aureus subsp aureus MW2' 'Staphylococcus epidermidis ATCC 12228' 'Staphylococcus epidermidis RP62A' 'Staphylococcus haemolyticus JCSC1435' 'Staphylococcus saprophyticus subsp saprophyticus ATCC 15305' 'Streptococcus pyogenes SSI 1' 'Streptococcus pyogenes MGAS315' 'Streptococcus pyogenes M1 GAS' 'Streptococcus pyogenes MGAS5005' 'Streptococcus pyogenes MGAS8232' 'Streptococcus pyogenes MGAS10750' 'Streptococcus pyogenes str Manfredo' 'Streptococcus pyogenes MGAS10394' 'Streptococcus pyogenes MGAS9429' 'Streptococcus pyogenes MGAS2096' 'Streptococcus pyogenes MGAS10270' 'Streptococcus pyogenes MGAS6180' 'Streptococcus agalactiae 2603V R' 'Streptococcus agalactiae A909' 'Streptococcus agalactiae NEM316' 'Streptococcus thermophilus LMG 18311' 'Streptococcus thermophilus CNRZ1066' 'Streptococcus thermophilus LMD 9' 'Streptococcus mutans UA159' 'Streptococcus suis 98HAH33' 'Streptococcus suis 05ZYH33' 'Streptococcus pneumoniae D39' 'Streptococcus pneumoniae R6' 'Streptococcus pneumoniae TIGR4' 'Streptococcus pneumoniae CGSP14' 'Streptococcus pneumoniae Hungary19A 6' 'Streptococcus gordonii str Challis substr CH1' 'Streptococcus sanguinis SK36' 'Lactococcus lactis subsp cremoris SK11' 'Lactococcus lactis subsp cremoris MG1363' 'Lactococcus lactis subsp lactis Il1403' 'Enterococcus faecalis V583' 'Lactobacillus acidophilus NCFM' 'Lactobacillus helveticus DPC 4571' 'Lactobacillus gasseri ATCC 33323' 'Lactobacillus johnsonii NCC 533' 'Lactobacillus delbrueckii subsp bulgaricus ATCC BAA 365' 'Lactobacillus delbrueckii subsp bulgaricus ATCC 11842' 'Lactobacillus casei BL23' 'Lactobacillus casei ATCC 334' 'Lactobacillus sakei subsp sakei 23K' 'Lactobacillus brevis ATCC 367' 'Lactobacillus plantarum WCFS1' 'Pediococcus pentosaceus ATCC 25745' 'Lactobacillus fermentum IFO 3956' 'Lactobacillus reuteri F275' 'Leuconostoc mesenteroides subsp mesenteroides ATCC 8293' 'Leuconostoc citreum KM20' 'Oenococcus oeni PSU 1' 'Lactobacillus salivarius UCC118' 'Listeria monocytogenes EGD e' 'Listeria monocytogenes str 4b F2365' 'Listeria welshimeri serovar 6b str SLCC5334' 'Listeria innocua Clip11262' 'Lysinibacillus sphaericus C3 41' 'Oceanobacillus iheyensis HTE831' 'Bacillus clausii KSM K16' 'Bacillus halodurans C 125' 'Exiguobacterium sibiricum 255 15' 'Alicyclobacillus acidocaldarius' 'Clostridium acetobutylicum ATCC 824' 'Clostridium novyi NT' 'Clostridium perfringens ATCC 13124' 'Clostridium perfringens str 13' 'Clostridium perfringens SM101' 'Clostridium botulinum E3 str Alaska E43' 'Clostridium botulinum B str Eklund 17B' 'Clostridium beijerinckii NCIMB 8052' 'Clostridium botulinum A str ATCC 3502' 'Clostridium botulinum A str ATCC 19397' 'Clostridium botulinum A str Hall' 'Clostridium botulinum F str Langeland' 'Clostridium botulinum B1 str Okra' 'Clostridium botulinum A3 str Loch Maree' 'Clostridium kluyveri DSM 555' 'Clostridium tetani E88' 'Clostridium phytofermentans ISDg' 'Anaerococcus prevotii' 'Finegoldia magna ATCC 29328' 'Alkaliphilus metalliredigens QYMF' 'Alkaliphilus oremlandii OhILAs' 'Clostridium difficile 630' 'Thermoanaerobacter pseudethanolicus ATCC 33223' 'Thermoanaerobacter sp X514' 'Thermoanaerobacter tengcongensis MB4' 'Caldicellulosiruptor saccharolyticus DSM 8903' 'Clostridium thermocellum ATCC 27405' 'Sanguibacter keddieii' 'Jonesia denitrificans' 'Xylanimonas cellulosilytica' 'Cellulomonas flavigena' 'Beutenbergia cavernae' 'Brachybacterium faecium' 'Kytococcus sedentarius' 'Arthrobacter aurescens TC1' 'Arthrobacter sp FB24' 'Renibacterium salmoninarum ATCC 33209' 'Kocuria rhizophila DC2201' 'Clavibacter michiganensis subsp michiganensis NCPPB 382' 'Clavibacter michiganensis subsp sepedonicus' 'Leifsonia xyli subsp xyli str CTCB07' 'Kineococcus radiotolerans SRS30216' 'Nocardiopsis dassonvillei' 'Thermobifida fusca YX' 'Thermomonospora curvata' 'Thermobispora bispora' 'Streptosporangium roseum' 'Acidothermus cellulolyticus 11B' 'Frankia sp CcI3' 'Frankia alni ACN14a' 'Frankia sp EAN1pec' 'Mycobacterium gilvum PYR GCK' 'Mycobacterium vanbaalenii PYR 1' 'Mycobacterium sp KMS' 'Mycobacterium sp MCS' 'Mycobacterium sp JLS' 'Mycobacterium smegmatis str MC2 155' 'Mycobacterium bovis AF2122 97' 'Mycobacterium bovis BCG str Pasteur 1173P2' 'Mycobacterium tuberculosis F11' 'Mycobacterium tuberculosis H37Ra' 'Mycobacterium tuberculosis H37Rv' 'Mycobacterium tuberculosis CDC1551' 'Mycobacterium marinum M' 'Mycobacterium ulcerans Agy99' 'Mycobacterium leprae TN' 'Mycobacterium avium 104' 'Mycobacterium avium subsp paratuberculosis K 10' 'Mycobacterium abscessus' 'Gordonia bronchialis' 'Tsukamurella paurometabola' 'Nocardia farcinica IFM 10152' 'Rhodococcus sp RHA1' 'Saccharomonospora viridis' 'Saccharopolyspora erythraea NRRL 2338' 'Actinosynnema mirum' 'Nakamurella multipartita' 'Geodermatophilus obscurus' 'Salinispora arenicola CNS 205' 'Salinispora tropica CNB 440' 'Stackebrandtia nassauensis' 'Streptomyces avermitilis MA 4680' 'Streptomyces coelicolor A3 2' 'Streptomyces griseus subsp griseus NBRC 13350' 'Catenulispora acidiphila' 'Kribbella flavida' 'Nocardioides sp JS614' 'Propionibacterium acnes KPA171202' 'Corynebacterium glutamicum R' 'Corynebacterium glutamicum ATCC 13032' 'Corynebacterium efficiens YS 314' 'Corynebacterium diphtheriae NCTC 13129' 'Corynebacterium urealyticum DSM 7109' 'Corynebacterium jeikeium K411' 'Bifidobacterium longum DJO10A' 'Bifidobacterium longum NCC2705' 'Bifidobacterium adolescentis ATCC 15703' 'Tropheryma whipplei TW08 27' 'Tropheryma whipplei str Twist' 'Acidimicrobium ferrooxidans' 'Cryptobacterium curtum' 'Eggerthella lenta' 'Slackia heliotrinireducens' 'Atopobium parvulum' 'Conexibacter woesei' 'Rubrobacter xylanophilus DSM 9941' 'Synechococcus sp WH 7803' 'Synechococcus sp CC9311' 'Synechococcus sp CC9605' 'Synechococcus sp WH 8102' 'Synechococcus sp CC9902' 'Prochlorococcus marinus subsp marinus str CCMP1375' 'Prochlorococcus marinus str MIT 9211' 'Prochlorococcus marinus str NATL2A' 'Prochlorococcus marinus str NATL1A' 'Prochlorococcus marinus str MIT 9515' 'Prochlorococcus marinus subsp pastoris str CCMP1986' 'Prochlorococcus marinus str AS9601' 'Prochlorococcus marinus str MIT 9301' 'Prochlorococcus marinus str MIT 9215' 'Prochlorococcus marinus str MIT 9312' 'Prochlorococcus marinus str MIT 9313' 'Prochlorococcus marinus str MIT 9303' 'Synechococcus sp RCC307' 'Synechococcus elongatus PCC 7942' 'Synechococcus elongatus PCC 6301' 'Nostoc sp PCC 7120' 'Anabaena variabilis ATCC 29413' 'Nostoc punctiforme PCC 73102' 'Trichodesmium erythraeum IMS101' 'Cyanothece sp ATCC 51142' 'Microcystis aeruginosa NIES 843' 'Synechocystis sp PCC 6803' 'Synechococcus sp PCC 7002' 'Acaryochloris marina MBIC11017' 'Thermosynechococcus elongatus BP 1' 'Synechococcus sp JA 3 3Ab' 'Synechococcus sp JA 2 3B a 2 13' 'Gloeobacter violaceus PCC 7421' 'Roseiflexus castenholzii DSM 13941' 'Roseiflexus sp RS 1' 'Chloroflexus aurantiacus J 10 fl' 'Herpetosiphon aurantiacus ATCC 23779' 'Sphaerobacter thermophilus' 'Thermobaculum terrenum' 'Dehalococcoides sp CBDB1' 'Dehalococcoides sp BAV1' 'Dehalococcoides ethenogenes 195' 'Thermosipho melanesiensis BI429' 'Fervidobacterium nodosum Rt17 B1' 'Thermotoga maritima MSB8' 'Thermotoga sp RQ2' 'Thermotoga petrophila RKU 1' 'Thermotoga lettingae TMO' 'Petrotoga mobilis SJ95' 'Thermus thermophilus HB8' 'Thermus thermophilus HB27' 'Meiothermus ruber' 'Meiothermus silvanus' 'Deinococcus geothermalis DSM 11300' 'Deinococcus radiodurans R1' ; END; BEGIN TREES; Tree tree5227 = ((((('Thermanaerovibrio acidaminovorans':0.190689,'Dethiosulfovibrio peptidovorans':0.263143):0.276658,(((((((((((((((((((((((((((((((((((((((('Escherichia coli O157 H7 str Sakai','Escherichia coli str K12 substr MG1655'):0.000151,'Escherichia coli str K12 substr DH10B'):2e-05,('Escherichia coli ATCC 8739':0.00017,'Escherichia coli HS':0.000171):0.00017),('Escherichia coli 536':0.001196,'Escherichia coli APEC O1')),(('Shigella flexneri 2a str 301':0.001883,'Shigella flexneri 2a str 2457T'):0.000171,'Shigella flexneri 5 str 8401':0.000344):0.000512),('Shigella boydii CDC 3083 94':0.000513,'Shigella boydii Sb227':0.000857):0.000342),'Escherichia coli SMS 3 5'),'Escherichia coli O157 H7 EDL933'),'Escherichia coli CFT073'),'Escherichia coli UTI89'),'Escherichia coli E24377A'),'Shigella dysenteriae Sd197':0.001025):0.000169,'Shigella sonnei Ss046':0.001028):0.012167,((((((('Salmonella enterica subsp enterica serovar Typhi str Ty2','Salmonella enterica subsp enterica serovar Typhi str CT18':0.00017):0.00034,'Salmonella typhimurium LT2'),'Salmonella enterica subsp enterica serovar Paratyphi A str ATCC 9150':0.00085):2e-06,'Salmonella enterica subsp enterica serovar Paratyphi B str SPB7':0.00018):0.000169,'Salmonella enterica subsp enterica serovar Choleraesuis str SC B67':0.000348):0.001774,'Salmonella enterica subsp arizonae serovar 62 z4 z23':0.001673):0.008533,'Citrobacter koseri ATCC BAA 895':0.007106):0.003103):0.00437,'Klebsiella pneumoniae subsp pneumoniae MGH 78578':0.012094):0.004392,'Enterobacter sakazakii ATCC BAA 894':0.019781):0.007021,'Enterobacter sp 638':0.019532):0.027075,('Erwinia tasmaniensis':0.033979,'Serratia proteamaculans 568':0.033607):0.013319):0.008604,'Erwinia carotovora subsp atroseptica SCRI1043':0.03122):0.012206,(((((('Yersinia pestis KIM','Yersinia pseudotuberculosis IP 31758'),'Yersinia pestis CO92'),'Yersinia pseudotuberculosis IP 32953'),(((('Yersinia pseudotuberculosis PB1','Yersinia pestis Pestoides F'),('Yersinia pseudotuberculosis YPIII','Yersinia pestis Nepal516')),'Yersinia pestis Antiqua':0.000172),'Yersinia pestis biovar Microtus str 91001')),'Yersinia pestis Angola':0.000344):0.00575,'Yersinia enterocolitica subsp enterocolitica 8081':0.009468):0.030284):0.008222,(((('Candidatus Blochmannia pennsylvanicus str BPEN':0.111832,'Candidatus Blochmannia floridanus':0.199319):0.14508,((('Buchnera aphidicola str APS Acyrthosiphon pisum':0.081646,'Buchnera aphidicola str Sg Schizaphis graminum':0.078489):0.090786,'Buchnera aphidicola str Bp Baizongia pistaciae':0.232468):0.043831,('Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis':0.30099,'Buchnera aphidicola str Cc Cinara cedri':0.303142):0.063766):0.064196):0.054991,'Baumannia cicadellinicola str Hc Homalodisca coagulata':0.166451):0.081445,'Sodalis glossinidius str morsitans':0.026696):0.024889):0.01239,'Photorhabdus luminescens subsp laumondii TTO1':0.048195):0.050763,(((('Haemophilus somnus 129PT':0.000973,'Haemophilus somnus 2336':0.000728):0.038446,'Pasteurella multocida subsp multocida str Pm70':0.033371):0.011204,(('Mannheimia succiniciproducens MBEL55E':0.02899,'Actinobacillus succinogenes 130Z':0.035825):0.013874,((('Haemophilus influenzae Rd KW20':0.002043,'Haemophilus influenzae PittGG':0.00105):0.000549,'Haemophilus influenzae 86 028NP':0.000515):0.000224,'Haemophilus influenzae PittEE':0.001026):0.040304):0.008478):0.011217,((('Actinobacillus pleuropneumoniae L20':0.00137,'Actinobacillus pleuropneumoniae serovar 7 str AP76':0.000339):0.000174,'Actinobacillus pleuropneumoniae serovar 3 str JL03':0.003062):0.011765,'Haemophilus ducreyi 35000HP':0.024577):0.038512):0.080775):0.047571,((((('Vibrio cholerae O1 biovar eltor str N16961':0.000364,'Vibrio cholerae O395':0.000838):0.041305,('Vibrio vulnificus CMCP6':0.000527,'Vibrio vulnificus YJ016':0.000172):0.020829):0.011445,('Vibrio parahaemolyticus RIMD 2210633':0.00625,'Vibrio harveyi ATCC BAA 1116':0.010839):0.011481):0.027253,'Vibrio fischeri ES114':0.05376):0.027779,'Photobacterium profundum SS9':0.072105):0.054993):0.023142,('Aeromonas hydrophila subsp hydrophila ATCC 7966':0.006284,'Aeromonas salmonicida subsp salmonicida A449':0.0108):0.109795):0.020707,(((((('Shewanella halifaxensis HAW EB4':0.008905,'Shewanella pealeana ATCC 700345':0.003805):0.025082,('Shewanella sediminis HAW EB3':0.019306,'Shewanella woodyi ATCC 51908':0.012326):0.017175):0.016987,'Shewanella loihica PV 4':0.021173):0.024752,(((((('Shewanella sp ANA 3':0.002092,'Shewanella sp MR 4':0.00098):0.000754,'Shewanella sp MR 7':0.000348):0.003036,'Shewanella oneidensis MR 1':0.002265):0.010027,('Shewanella sp W3 18 1':0.000326,'Shewanella putrefaciens CN 32':0.000185):0.001996):0.006463,(('Shewanella baltica OS155':0.001236,'Shewanella baltica OS195'):0.000523,'Shewanella baltica OS185':0.000684):0.009966):0.015626,('Shewanella denitrificans OS217':0.017657,'Shewanella frigidimarina NCIMB 400':0.02512):0.022711):0.020469):0.018183,'Shewanella amazonensis SB2B':0.035265):0.092511,'Psychromonas ingrahamii 37':0.170059):0.021406):0.025447,(('Idiomarina loihiensis L2TR':0.129215,'Pseudoalteromonas atlantica T6c':0.121204):0.026755,('Pseudoalteromonas haloplanktis TAC125':0.120366,'Colwellia psychrerythraea 34H':0.144993):0.031198):0.015669):0.082415,'Kangiella koreensis':0.172853):0.0486,(((((('Acinetobacter baumannii ACICU':0.000884,'Acinetobacter baumannii ATCC 17978':0.003413):0.000527,('Acinetobacter baumannii SDF':0.000848,'Acinetobacter baumannii AYE':0.00017)):0.020056,'Acinetobacter sp ADP1':0.027905):0.107102,(('Psychrobacter arcticus 273 4':0.006888,'Psychrobacter cryohalolentis K5':0.006086):0.066403,'Psychrobacter sp PRwf 1':0.060503):0.121017):0.15381,'Alcanivorax borkumensis SK2':0.175254):0.040455,((('Chromohalobacter salexigens DSM 3043':0.167612,'Marinomonas sp MWYL1':0.175719):0.038094,('Marinobacter aquaeolei VT8':0.1125,'Hahella chejuensis KCTC 2396':0.130701):0.053467):0.019075,((((((((('Pseudomonas syringae pv syringae B728a':0.001801,'Pseudomonas syringae pv phaseolicola 1448A':0.002321):0.002597,'Pseudomonas syringae pv tomato str DC3000':0.003918):0.02921,'Pseudomonas fluorescens Pf 5':0.014609):0.00751,'Pseudomonas fluorescens PfO 1':0.010753):0.026949,(((('Pseudomonas putida KT2440':0.000171,'Pseudomonas putida F1'):0.001622,'Pseudomonas putida GB 1':0.003034):0.003248,'Pseudomonas putida W619':0.007868):0.003675,'Pseudomonas entomophila L48':0.007306):0.02498):0.030505,'Pseudomonas mendocina ymp':0.030084):0.018411,'Pseudomonas stutzeri A1501':0.035067):0.021645,(('Pseudomonas aeruginosa PAO1','Pseudomonas aeruginosa UCBPP PA14':0.000171):0.001113,'Pseudomonas aeruginosa PA7':0.001132):0.032184):0.118537,('Saccharophagus degradans 2 40':0.107494,'Cellvibrio japonicus Ueda107':0.109149):0.090952):0.024456):0.029903):0.041423):0.029921,((('Legionella pneumophila str Corby':0.001506,'Legionella pneumophila subsp pneumophila str Philadelphia 1':0.000543):0.00031,('Legionella pneumophila str Lens':0.00222,'Legionella pneumophila str Paris':0.001831):0.000376):0.255271,(('Coxiella burnetii RSA 331':0.00102,'Coxiella burnetii RSA 493':0.00051):0.001141,'Coxiella burnetii Dugway 5J108 111':0.001413):0.286937):0.063734):0.020357,(((((((('Francisella tularensis subsp tularensis SCHU S4','Francisella tularensis subsp tularensis FSC198'):0.001507,'Francisella tularensis subsp tularensis WY96 3418':0.000335):0.000334,(('Francisella tularensis subsp holarctica OSU18','Francisella tularensis subsp holarctica':0.000502),'Francisella tularensis subsp holarctica FTNF002 00':0.000335):0.002852),'Francisella tularensis subsp mediasiatica FSC147':0.002516):0.001333,'Francisella tularensis subsp novicida U112':0.000681):0.02679,'Francisella philomiragia subsp philomiragia ATCC 25017':0.028537):0.343835,'Dichelobacter nodosus VCS1703A':0.35117):0.058577,(('Candidatus Ruthia magnifica str Cm Calyptogena magnifica':0.048117,'Candidatus Vesicomyosocius okutanii HA':0.070088):0.299069,'Thiomicrospira crunogena XCL 2':0.218606):0.069384):0.027865):0.019953,((('Halorhodospira halophila SL1':0.175731,'Alkalilimnicola ehrlichei MLHE 1':0.10505):0.103584,'Nitrosococcus oceani ATCC 19707':0.225193):0.031953,(((((('Xanthomonas campestris pv campestris str 8004':0.000343,'Xanthomonas campestris pv campestris str ATCC 33913':0.000515):0.000345,'Xanthomonas campestris pv campestris':0.00017):0.006192,((('Xanthomonas oryzae pv oryzae KACC10331':0.000175,'Xanthomonas oryzae pv oryzae MAFF 311018'),'Xanthomonas oryzae pv oryzae PXO99A':0.002957):0.008947,('Xanthomonas campestris pv vesicatoria str 85 10':0.001996,'Xanthomonas axonopodis pv citri str 306':0.00127):0.004934):0.005782):0.031343,'Stenotrophomonas maltophilia K279a':0.060056):0.030521,((('Xylella fastidiosa M23','Xylella fastidiosa Temecula1':0.000174):0.005446,'Xylella fastidiosa M12':0.003419):0.005622,'Xylella fastidiosa 9a5c':0.003688):0.09616):0.251782,'Methylococcus capsulatus str Bath':0.208011):0.028921):0.02517):0.056558,(((((('Nitrosomonas europaea ATCC 19718':0.04084,'Nitrosomonas eutropha C91':0.04959):0.144982,'Nitrosospira multiformis ATCC 25196':0.08516):0.076439,'Thiobacillus denitrificans ATCC 25259':0.145726):0.023371,'Methylobacillus flagellatus KT':0.155554):0.027233,((('Azoarcus sp BH72':0.052172,'Azoarcus sp EbN1':0.058776):0.062917,'Dechloromonas aromatica RCB':0.113139):0.05407,(((((('Polynucleobacter sp QLW P1DMWA 1':0.011,'Polynucleobacter necessarius STIR1':0.023235):0.136644,(((('Cupriavidus taiwanensis':0.005601,'Ralstonia eutropha H16':0.005264):0.006279,'Ralstonia eutropha JMP134':0.007605):0.010799,'Ralstonia metallidurans CH34':0.013934):0.029247,('Ralstonia solanacearum GMI1000':0.02203,'Ralstonia pickettii 12J':0.021784):0.025195):0.037629):0.022794,((('Burkholderia phytofirmans PsJN':0.004098,'Burkholderia xenovorans LB400':0.002629):0.017129,'Burkholderia phymatum STM815':0.017185):0.015186,((((('Burkholderia ambifaria AMMD':0.001201,'Burkholderia ambifaria MC40 6':0.000165):0.00415,((('Burkholderia cenocepacia AU 1054','Burkholderia cenocepacia HI2424':0.000171):0.000171,'Burkholderia cenocepacia MC0 3'):0.002317,'Burkholderia sp 383':0.007333):0.002889):0.00261,'Burkholderia vietnamiensis G4':0.003346):0.015421,'Burkholderia multivorans ATCC 17616':0.005208):0.005853,(((((((('Burkholderia mallei NCTC 10247','Burkholderia mallei NCTC 10229':0.000172):0.000343,'Burkholderia mallei ATCC 23344':0.000191),'Burkholderia mallei SAVP1'):0.000171,'Burkholderia pseudomallei K96243':0.000516),'Burkholderia pseudomallei 1710b'),'Burkholderia pseudomallei 668'),'Burkholderia pseudomallei 1106a':0.000171):0.004036,'Burkholderia thailandensis E264':0.005011):0.007936):0.019911):0.063072):0.026718,('Herminiimonas arsenicoxydans':0.021781,'Janthinobacterium sp Marseille':0.013485):0.104015):0.024622,(('Methylibium petroleiphilum PM1':0.071447,'Leptothrix cholodnii SP 6':0.085431):0.041536,(((('Delftia acidovorans SPH 1':0.061373,'Acidovorax sp JS42':0.025396):0.016116,'Acidovorax avenae subsp citrulli AAC00 1':0.025052):0.01365,'Verminephrobacter eiseniae EF01 2':0.072504):0.026641,(('Polaromonas naphthalenivorans CJ2':0.031581,'Polaromonas sp JS666':0.022265):0.044515,'Rhodoferax ferrireducens T118':0.06856):0.022175):0.065841):0.119404):0.025568,(((('Bordetella bronchiseptica RB50':0.000172,'Bordetella parapertussis 12822':0.001377):0.000118,'Bordetella pertussis Tohama I':0.001433):0.021534,'Bordetella avium 197N':0.031614):0.010355,'Bordetella petrii DSM 12804':0.021324):0.132685):0.071258):0.027059):0.037078,((('Neisseria gonorrhoeae FA 1090':0.0005,'Neisseria gonorrhoeae NCCP11945':0.001485):0.006103,((('Neisseria meningitidis MC58':0.001366,'Neisseria meningitidis Z2491':0.00101):0.000787,'Neisseria meningitidis FAM18':0.001575):0.000557,'Neisseria meningitidis 053442':0.002602):0.001738):0.167934,'Chromobacterium violaceum ATCC 12472':0.09855):0.087498):0.124859):0.205339,((((((((((((('Rhizobium etli CIAT 652':0.003437,'Rhizobium etli CFN 42':0.005094):0.006043,'Rhizobium leguminosarum bv viciae 3841':0.011645):0.036083,'Agrobacterium tumefaciens str C58':0.045233):0.016839,('Sinorhizobium meliloti 1021':0.006124,'Sinorhizobium medicae WSM419':0.006258):0.029756):0.070623,((((('Bartonella henselae str Houston 1':0.020444,'Bartonella quintana str Toulouse':0.029388):0.009808,'Bartonella tribocorum CIP 105476':0.025338):0.031387,'Bartonella bacilliformis KC583':0.065286):0.098029,((((('Brucella canis ATCC 23365':0.000688,'Brucella suis 1330':0.000172):0.000689,'Brucella suis ATCC 23445':0.001033),((('Brucella abortus S19':0.000176,'Brucella melitensis biovar Abortus 2308':0.000172),'Brucella abortus biovar 1 str 9 941'):0.000684,'Brucella melitensis 16M':0.002611):0.000171),'Brucella ovis ATCC 25840':0.001206):0.013975,'Ochrobactrum anthropi ATCC 49188':0.01275):0.047742):0.034988,('Mesorhizobium loti MAFF303099':0.077568,'Mesorhizobium sp BNC1':0.07419):0.027327):0.021349):0.086016,(((((('Methylobacterium extorquens PA1':0.011368,'Methylobacterium populi BJ001':0.004799):0.03256,'Methylobacterium radiotolerans JCM 2831':0.045067):0.041026,'Methylobacterium sp 4 46':0.058056):0.074338,'Beijerinckia indica subsp indica ATCC 9039':0.149061):0.026115,('Xanthobacter autotrophicus Py2':0.058512,'Azorhizobium caulinodans ORS 571':0.044976):0.079042):0.02072,(((('Bradyrhizobium sp ORS278':0.007711,'Bradyrhizobium sp BTAi1':0.006207):0.029183,'Bradyrhizobium japonicum USDA 110':0.033032):0.020122,((('Rhodopseudomonas palustris TIE 1','Rhodopseudomonas palustris CGA009':0.000343):0.030733,('Rhodopseudomonas palustris BisB5':0.012815,'Rhodopseudomonas palustris HaA2':0.011805):0.010984):0.018577,('Rhodopseudomonas palustris BisB18':0.037297,'Rhodopseudomonas palustris BisA53':0.031869):0.014739):0.023424):0.01122,('Nitrobacter winogradskyi Nb 255':0.018532,'Nitrobacter hamburgensis X14':0.017835):0.041031):0.111343):0.056949):0.041219,'Parvibaculum lavamentivorans DS 1':0.17312):0.029751,(('Maricaulis maris MCS10':0.176054,'Hyphomonas neptunium ATCC 15444':0.253873):0.037937,('Caulobacter sp K31':0.046364,'Caulobacter crescentus CB15':0.03404):0.177012):0.067981):0.024054,((((('Silicibacter pomeroyi DSS 3':0.054186,'Silicibacter sp TM1040':0.048369):0.026318,'Roseobacter denitrificans OCh 114':0.076151):0.022514,'Jannaschia sp CCS1':0.099178):0.015502,'Dinoroseobacter shibae DFL 12':0.062324):0.048422,((('Rhodobacter sphaeroides ATCC 17029':0.000354,'Rhodobacter sphaeroides 2 4 1':0.000792):0.0133,'Rhodobacter sphaeroides ATCC 17025':0.013986):0.076691,'Paracoccus denitrificans PD1222':0.091793):0.030158):0.202704):0.030795,((('Novosphingobium aromaticivorans DSM 12444':0.086704,'Erythrobacter litoralis HTCC2594':0.121244):0.045873,'Sphingopyxis alaskensis RB2256':0.085216):0.03517,('Sphingomonas wittichii RW1':0.074921,'Zymomonas mobilis subsp mobilis ZM4':0.113715):0.03071):0.187787):0.027917,(('Rhodospirillum rubrum ATCC 11170':0.169238,'Magnetospirillum magneticum AMB 1':0.125062):0.055149,((('Gluconobacter oxydans 621H':0.101123,'Gluconacetobacter diazotrophicus PAl 5':0.059111):0.060663,'Granulibacter bethesdensis CGDNIH1':0.085514):0.032014,'Acidiphilium cryptum JF 5':0.120348):0.145099):0.055072):0.09899,((((('Rickettsia bellii RML369 C':0.00064,'Rickettsia bellii OSU 85 389':0.000624):0.053585,((('Rickettsia typhi str Wilmington':0.015422,'Rickettsia prowazekii str Madrid E':0.012042):0.039247,(('Rickettsia felis URRWXCal2':0.00684,'Rickettsia akari str Hartford':0.024586):0.00502,((('Rickettsia rickettsii str Iowa','Rickettsia rickettsii str Sheila Smith'):0.00663,'Rickettsia conorii str Malish 7':0.002765):0.00386,'Rickettsia massiliae MTU5':0.00794):0.008218):0.002179):0.00446,'Rickettsia canadensis str McKiel':0.030982):0.03239):0.199956,('Orientia tsutsugamushi Boryong':0.012903,'Orientia tsutsugamushi str Ikeda':0.003049):0.386268):0.180586,(((('Anaplasma phagocytophilum HZ':0.123173,'Anaplasma marginale str St Maries':0.120008):0.159306,(('Ehrlichia ruminantium str Gardel':0.002292,'Ehrlichia ruminantium str 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W83':0.001013):0.151787,'Parabacteroides distasonis ATCC 8503':0.06466):0.046245):0.18136):0.057273):0.041539):0.194704,('Rhodothermus marinus':0.154571,'Salinibacter ruber DSM 13855':0.312844):0.159944):0.062353,(((('Chlorobium tepidum TLS':0.032082,'Chlorobaculum parvum NCIB 8327':0.032712):0.058237,((('Prosthecochloris vibrioformis DSM 265':0.059493,'Pelodictyon luteolum DSM 273':0.0478):0.035359,'Chlorobium chlorochromatii CaD3':0.105899):0.014378,('Chlorobium limicola DSM 245':0.051253,'Chlorobium phaeobacteroides DSM 266':0.062034):0.016101):0.038256):0.042465,'Chlorobium phaeobacteroides BS1':0.115118):0.129491,'Chloroherpeton thalassium ATCC 35110':0.162073):0.253695):0.148638,(((('Akkermansia muciniphila ATCC BAA 835':0.396966,'Opitutus terrae PB90 1':0.451463):0.059359,'Methylacidiphilum infernorum V4':0.427955):0.105972,((((('Chlamydia trachomatis D UW 3 CX':0.002254,'Chlamydia trachomatis A HAR 13':0.002736):0.004197,('Chlamydia trachomatis 434 Bu','Chlamydia trachomatis 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dassonvillei':0.093463,'Thermobifida fusca YX':0.072507):0.074571,'Thermomonospora curvata':0.099223):0.020272,('Thermobispora bispora':0.072121,'Streptosporangium roseum':0.083245):0.048392):0.038128,'Acidothermus cellulolyticus 11B':0.153492):0.027393,((('Frankia sp CcI3':0.019914,'Frankia alni ACN14a':0.017049):0.027318,'Frankia sp EAN1pec':0.039855):0.137522,(((((((((('Mycobacterium gilvum PYR GCK':0.025373,'Mycobacterium vanbaalenii PYR 1':0.014398):0.020335,(('Mycobacterium sp KMS','Mycobacterium sp MCS'):0.000254,'Mycobacterium sp JLS':0.000438):0.029295):0.012695,'Mycobacterium smegmatis str MC2 155':0.027998):0.015961,(((((((('Mycobacterium bovis AF2122 97','Mycobacterium bovis BCG str Pasteur 1173P2':0.000348):0.000522,'Mycobacterium tuberculosis F11':0.000348),'Mycobacterium tuberculosis H37Ra'),'Mycobacterium tuberculosis H37Rv'):0.000174,'Mycobacterium tuberculosis CDC1551':0.000348):0.028503,('Mycobacterium marinum M':0.000283,'Mycobacterium ulcerans Agy99':0.005107):0.026919):0.008581,'Mycobacterium leprae TN':0.050438):0.008421,('Mycobacterium avium 104':0.000171,'Mycobacterium avium subsp paratuberculosis K 10':0.001878):0.024032):0.041807):0.021744,'Mycobacterium abscessus':0.054563):0.05338,(('Gordonia bronchialis':0.080084,'Tsukamurella paurometabola':0.095182):0.023186,('Nocardia farcinica IFM 10152':0.066164,'Rhodococcus sp RHA1':0.059553):0.015357):0.01873):0.081897,(('Saccharomonospora viridis':0.098036,'Saccharopolyspora erythraea NRRL 2338':0.100342):0.021978,'Actinosynnema mirum':0.097173):0.027185):0.031045,'Nakamurella multipartita':0.151197):0.032028,'Geodermatophilus obscurus':0.140115):0.027068,(('Salinispora arenicola CNS 205':0.012069,'Salinispora tropica CNB 440':0.010019):0.097618,'Stackebrandtia nassauensis':0.170224):0.084563):0.033468):0.03169):0.026445,((('Streptomyces avermitilis MA 4680':0.027139,'Streptomyces coelicolor A3 2':0.027351):0.021484,'Streptomyces griseus subsp griseus NBRC 13350':0.037328):0.090414,'Catenulispora acidiphila':0.137426):0.05113):0.0286,(('Kribbella flavida':0.118628,'Nocardioides sp JS614':0.133604):0.026332,'Propionibacterium acnes KPA171202':0.242956):0.044904):0.019561):0.056195,(((('Corynebacterium glutamicum R':0.000477,'Corynebacterium glutamicum ATCC 13032':0.001073):0.033614,'Corynebacterium efficiens YS 314':0.038791):0.051561,'Corynebacterium diphtheriae NCTC 13129':0.068116):0.044622,('Corynebacterium urealyticum DSM 7109':0.065695,'Corynebacterium jeikeium K411':0.054499):0.056416):0.221144):0.045301,(('Bifidobacterium longum DJO10A':0.000188,'Bifidobacterium longum NCC2705':0.000339):0.040933,'Bifidobacterium adolescentis ATCC 15703':0.037617):0.303161):0.039753,('Tropheryma whipplei TW08 27':0.000895,'Tropheryma whipplei str Twist':0.000679):0.478476):0.120846,'Acidimicrobium ferrooxidans':0.43829):0.090081,((('Cryptobacterium curtum':0.142154,'Eggerthella lenta':0.088587):0.047811,'Slackia heliotrinireducens':0.117231):0.104268,'Atopobium parvulum':0.269623):0.198082):0.036936,('Conexibacter woesei':0.383152,'Rubrobacter xylanophilus DSM 9941':0.357989):0.109409):0.087352,((((((((('Synechococcus sp WH 7803':0.023543,'Synechococcus sp CC9311':0.044194):0.014221,(('Synechococcus sp CC9605':0.022222,'Synechococcus sp WH 8102':0.025798):0.006423,'Synechococcus sp CC9902':0.032326):0.022152):0.016325,((('Prochlorococcus marinus subsp marinus str CCMP1375':0.058394,'Prochlorococcus marinus str MIT 9211':0.053438):0.019947,(('Prochlorococcus marinus str NATL2A':0.00276,'Prochlorococcus marinus str NATL1A':0.002109):0.070906,(('Prochlorococcus marinus str MIT 9515':0.013908,'Prochlorococcus marinus subsp pastoris str CCMP1986':0.016702):0.023743,((('Prochlorococcus marinus str AS9601':0.005031,'Prochlorococcus marinus str MIT 9301':0.005416):0.003975,'Prochlorococcus marinus str MIT 9215':0.011185):0.004908,'Prochlorococcus marinus str MIT 9312':0.010415):0.020455):0.117983):0.022565):0.040798,('Prochlorococcus marinus str MIT 9313':0.00429,'Prochlorococcus marinus str MIT 9303':0.003453):0.043557):0.012995):0.046129,'Synechococcus sp RCC307':0.067465):0.195828,('Synechococcus elongatus PCC 7942':0.000321,'Synechococcus elongatus PCC 6301':0.00142):0.098101):0.061386,((((('Nostoc sp PCC 7120':0.004827,'Anabaena variabilis ATCC 29413':0.003501):0.036361,'Nostoc punctiforme PCC 73102':0.042386):0.086848,'Trichodesmium erythraeum IMS101':0.151445):0.024405,((('Cyanothece sp ATCC 51142':0.088208,'Microcystis aeruginosa NIES 843':0.108904):0.018975,'Synechocystis sp PCC 6803':0.111161):0.027275,'Synechococcus sp PCC 7002':0.127272):0.053965):0.023778,('Acaryochloris marina MBIC11017':0.127345,'Thermosynechococcus elongatus BP 1':0.138774):0.035212):0.017944):0.063385,('Synechococcus sp JA 3 3Ab':0.023735,'Synechococcus sp JA 2 3B a 2 13':0.025648):0.172906):0.056598,'Gloeobacter violaceus PCC 7421':0.211642):0.301851,((((('Roseiflexus castenholzii DSM 13941':0.02822,'Roseiflexus sp RS 1':0.017828):0.118476,'Chloroflexus aurantiacus J 10 fl':0.154341):0.066504,'Herpetosiphon aurantiacus ATCC 23779':0.219302):0.124086,('Sphaerobacter thermophilus':0.242004,'Thermobaculum terrenum':0.272557):0.055029):0.055648,(('Dehalococcoides sp CBDB1':0.000554,'Dehalococcoides sp BAV1':0.000851):0.017643,'Dehalococcoides ethenogenes 195':0.014048):0.50406):0.083393):0.032459):0.039409):0.035188):0.022061):0.039665):0.054226,((('Thermosipho melanesiensis BI429':0.127803,'Fervidobacterium nodosum Rt17 B1':0.188887):0.074834,((('Thermotoga maritima MSB8':0.007577,'Thermotoga sp RQ2':0.00053):0.005057,'Thermotoga petrophila RKU 1':0.006656):0.159923,'Thermotoga lettingae TMO':0.230211):0.037393):0.080613,'Petrotoga mobilis SJ95':0.362128):0.246177):0.287154,(('Thermus thermophilus HB8':0.001498,'Thermus thermophilus HB27':0.001224):0.144321,('Meiothermus ruber':0.114423,'Meiothermus silvanus':0.077947):0.086289):0.12529):0.1212895,('Deinococcus geothermalis DSM 11300':0.043888,'Deinococcus radiodurans R1':0.07314):0.1212895); END;