--embed --agent-only pythonVersion 2.7.5+ pythonImplementation CPython ^ot:dataDeposit ^ot:ottId otu351858 otu351859 otu351860 otu351865 otu351866 otu351867 otu351868 otu351870 otu351877 otu351878 otu351880 otu351881 otu351882 otu351884 otu351885 otu351886 otu351890 otu351900 otu351902 otu351903 otu351904 otu351905 otu351906 otu351907 otu351909 otu351915 otu351926 otu351931 otu351938 otu351940 otu351941 otu351944 otu351945 otu351964 otu351966 otu351969 otu351972 otu351973 otu351974 otu351975 otu351976 otu351979 otu351985 otu351987 otu351989 otu351992 otu351995 otu351996 otu351997 otu352001 otu352002 otu352003 otu352004 otu352006 otu352008 otu352012 otu352013 otu352017 otu352018 otu352019 otu352025 otu352034 otu352049 otu352050 otu352065 otu352066 otu352071 otu352087 otu352100 otu352105 otu352113 otu352122 otu352127 otu352129 otu352130 otu352132 otu352135 otu352142 otu352144 otu352149 otu352150 otu352151 otu352154 otu352155 otu352156 otu352159 otu352161 otu352164 otu352165 otu352166 otu352167 otu352171 otu352177 otu352182 otu352183 otu352184 otu352185 otu352187 otu352192 otu352201 otu352202 otu352206 otu352207 otu352209 otu352210 otu352216 otu352229 otu352255 otu352256 otu352257 otu352258 otu352260 otu352262 otu352275 otu352279 otu352280 otu352281 otu352290 otu352292 otu352293 otu352294 otu352298 otu352301 otu352308 otu352312 otu352317 otu352319 otu352335 otu352337 otu352338 otu352339 otu352340 otu352341 otu352342 otu352344 otu352345 otu352348 otu352349 otu352350 otu352354 otu352355 otu352367 otu352372 otu352380 otu352381 otu352383 otu352384 otu352385 otu352391 otu352392 otu352395 otu352403 otu352406 otu352407 otu352413 otu352418 otu352420 otu352421 otu352423 otu352424 otu352428 otu352438 otu352453 otu352454 otu352455 otu352463 otu352465 otu352466 otu352467 otu352468 otu352469 otu352470 otu352471 otu352482 otu352487 otu352490 otu352493 otu352494 otu352498 otu352501 otu352512 otu352513 otu352521 otu352522 otu352523 otu352524 otu352525 otu352526 otu352529 otu352530 otu352532 otu352533 otu352534 otu352538 otu352541 otu352545 otu352546 otu352547 otu352548 otu352550 otu352551 otu352552 otu352555 otu352556 otu352560 otu352561 otu352564 otu352566 otu352282 otu352283 ^ot:inGroupClade Jessica Grant pg_2450 Dongying Wu, Philip Hugenholtz, Konstantinos Mavromatis, Rüdiger Pukall, Eileen Dalin, Natalia N. Ivanova, Victor Kunin, Lynne Goodwin, Martin Wu, Brian J. Tindall, Sean D. Hooper, Amrita Pati, Athanasios Lykidis, Stefan Spring, Iain J. Anderson, Patrik D’haeseleer, Adam Zemla, Mitchell Singer, Alla Lapidus, Matt Nolan, Alex Copeland, Cliff Han, Feng Chen, Jan-Fang Cheng, Susan Lucas, Cheryl Kerfeld, Elke Lang, Sabine Gronow, Patrick Chain, David Bruce, Edward M. Rubin, Nikos C. Kyrpides, Hans-Peter Klenk, Jonathan A. Eisen. 2009. A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature 462(7276):1056-1060. 2009 Thermanaerovibrio acidaminovorans 330557 Thermanaerovibrio acidaminovorans Dethiosulfovibrio peptidovorans 715796 Dethiosulfovibrio peptidovorans Escherichia coli O157 H7 str Sakai Escherichia coli str K12 substr MG1655 Escherichia coli str K12 substr DH10B Escherichia coli ATCC 8739 678145 Escherichia coli ATCC 8739 Escherichia coli HS 36944 Escherichia coli HS Escherichia coli 536 336391 Escherichia coli 536 Escherichia coli APEC O1 1021605 Escherichia coli APEC O1 Shigella flexneri 2a str 301 Shigella flexneri 2a str 2457T Shigella flexneri 5 str 8401 Shigella boydii CDC 3083 94 Shigella boydii Sb227 1091291 Shigella boydii Sb227 Escherichia coli SMS 3 5 Escherichia coli O157 H7 EDL933 273352 Escherichia coli O157:H7 str. EDL933 Escherichia coli CFT073 601731 Escherichia coli CFT073 Escherichia coli UTI89 62553 Escherichia coli UTI89 Escherichia coli E24377A 36937 Escherichia coli E24377A Shigella dysenteriae Sd197 1091301 Shigella dysenteriae Sd197 Shigella sonnei Ss046 1091288 Shigella sonnei Ss046 Salmonella enterica subsp enterica serovar Typhi str Ty2 Salmonella enterica subsp enterica serovar Typhi str CT18 Salmonella typhimurium LT2 973918 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp enterica serovar Paratyphi A str ATCC 9150 Salmonella enterica subsp enterica serovar Paratyphi B str SPB7 Salmonella enterica subsp enterica serovar Choleraesuis str SC B67 Salmonella enterica subsp arizonae serovar 62 z4 z23 489643 Salmonella enterica subsp. arizonae serovar 62:z4,z23:- Citrobacter koseri ATCC BAA 895 Klebsiella pneumoniae subsp pneumoniae MGH 78578 Enterobacter sakazakii ATCC BAA 894 Enterobacter sp 638 599955 Enterobacter sp. 638 Erwinia tasmaniensis 5858 Erwinia tasmaniensis Serratia proteamaculans 568 1030764 Serratia proteamaculans 568 Erwinia carotovora subsp atroseptica SCRI1043 Yersinia pestis KIM 276884 Yersinia pestis KIM10+ Yersinia pseudotuberculosis IP 31758 735111 Yersinia pseudotuberculosis IP 31758 Yersinia pestis CO92 289021 Yersinia pestis CO92 Yersinia pseudotuberculosis IP 32953 832899 Yersinia pseudotuberculosis IP 32953 Yersinia pseudotuberculosis PB1 957358 Yersinia pseudotuberculosis PB1/+ Yersinia pestis Pestoides F 412668 Yersinia pestis Pestoides F Yersinia pseudotuberculosis YPIII 957361 Yersinia pseudotuberculosis YPIII Yersinia pestis Nepal516 894988 Yersinia pestis Nepal516 Yersinia pestis Antiqua 962610 Yersinia pestis Antiqua Yersinia pestis biovar Microtus str 91001 Yersinia pestis Angola 735114 Yersinia pestis Angola Yersinia enterocolitica subsp enterocolitica 8081 Candidatus Blochmannia pennsylvanicus str BPEN Candidatus Blochmannia floridanus Buchnera aphidicola str APS Acyrthosiphon pisum Buchnera aphidicola str Sg Schizaphis graminum Buchnera aphidicola str Bp Baizongia pistaciae Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis 1065772 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis Buchnera aphidicola str Cc Cinara cedri Baumannia cicadellinicola str Hc Homalodisca coagulata 4790673 Baumannia cicadellinicola str. Hc (Homalodisca coagulata) Sodalis glossinidius str morsitans 218480 Sodalis glossinidius str. 'morsitans' Photorhabdus luminescens subsp laumondii TTO1 728711 Photorhabdus luminescens subsp. laumondii TTO1 Haemophilus somnus 129PT 86437 Haemophilus somnus 129PT Haemophilus somnus 2336 948000 Haemophilus somnus 2336 Pasteurella multocida subsp multocida str Pm70 Mannheimia succiniciproducens MBEL55E 613393 Mannheimia succiniciproducens MBEL55E Actinobacillus succinogenes 130Z 979197 Actinobacillus succinogenes 130Z Haemophilus influenzae Rd KW20 640784 Haemophilus influenzae Rd KW20 Haemophilus influenzae PittGG 713838 Haemophilus influenzae PittGG Haemophilus influenzae 86 028NP 22009 Haemophilus influenzae 86-028NP Haemophilus influenzae PittEE 713835 Haemophilus influenzae PittEE Actinobacillus pleuropneumoniae L20 738287 Actinobacillus pleuropneumoniae serovar 5b str. L20 Actinobacillus pleuropneumoniae serovar 7 str AP76 878930 Actinobacillus pleuropneumoniae serovar 7 str. AP76 Actinobacillus pleuropneumoniae serovar 3 str JL03 28145 Actinobacillus pleuropneumoniae serovar 3 str. JL03 Haemophilus ducreyi 35000HP 1065271 Haemophilus ducreyi 35000HP Vibrio cholerae O1 biovar eltor str N16961 Vibrio cholerae O395 34696 Vibrio cholerae O395 Vibrio vulnificus CMCP6 641143 Vibrio vulnificus CMCP6 Vibrio vulnificus YJ016 633601 Vibrio vulnificus YJ016 Vibrio parahaemolyticus RIMD 2210633 383129 Vibrio parahaemolyticus RIMD 2210633 Vibrio harveyi ATCC BAA 1116 Vibrio fischeri ES114 849272 Vibrio fischeri ES114 Photobacterium profundum SS9 267673 Photobacterium profundum SS9 Aeromonas hydrophila subsp hydrophila ATCC 7966 58146 Aeromonas hydrophila subsp. hydrophila ATCC 7966 Aeromonas salmonicida subsp salmonicida A449 541765 Aeromonas salmonicida subsp. salmonicida A449 Shewanella halifaxensis HAW EB4 368716 Shewanella halifaxensis HAW-EB4 Shewanella pealeana ATCC 700345 163791 Shewanella pealeana ATCC 700345 Shewanella sediminis HAW EB3 Shewanella woodyi ATCC 51908 794093 Shewanella woodyi ATCC 51908 Shewanella loihica PV 4 Shewanella sp ANA 3 Shewanella sp MR 4 915504 Shewanella sp. MR-4 Shewanella sp MR 7 915503 Shewanella sp. MR-7 Shewanella oneidensis MR 1 Shewanella sp W3 18 1 Shewanella putrefaciens CN 32 377327 Shewanella putrefaciens CN-32 Shewanella baltica OS155 476163 Shewanella baltica OS155 Shewanella baltica OS195 216404 Shewanella baltica OS195 Shewanella baltica OS185 927550 Shewanella baltica OS185 Shewanella denitrificans OS217 347460 Shewanella denitrificans OS217 Shewanella frigidimarina NCIMB 400 973887 Shewanella frigidimarina NCIMB 400 Shewanella amazonensis SB2B 569594 Shewanella amazonensis SB2B Psychromonas ingrahamii 37 732486 Psychromonas ingrahamii 37 Idiomarina loihiensis L2TR 476481 Idiomarina loihiensis L2TR Pseudoalteromonas atlantica T6c 95807 Pseudoalteromonas atlantica T6c Pseudoalteromonas haloplanktis TAC125 219433 Pseudoalteromonas haloplanktis TAC125 Colwellia psychrerythraea 34H 462302 Colwellia psychrerythraea 34H Kangiella koreensis 943598 Kangiella koreensis Acinetobacter baumannii ACICU 907304 Acinetobacter baumannii ACICU Acinetobacter baumannii ATCC 17978 655015 Acinetobacter baumannii ATCC 17978 Acinetobacter baumannii SDF 307613 Acinetobacter baumannii SDF Acinetobacter baumannii AYE 307610 Acinetobacter baumannii AYE Acinetobacter sp ADP1 703641 Acinetobacter sp. ADP1 Psychrobacter arcticus 273 4 Psychrobacter cryohalolentis K5 646041 Psychrobacter cryohalolentis K5 Psychrobacter sp PRwf 1 Alcanivorax borkumensis SK2 37386 Alcanivorax borkumensis SK2 Chromohalobacter salexigens DSM 3043 272436 Chromohalobacter salexigens DSM 3043 Marinomonas sp MWYL1 Marinobacter aquaeolei VT8 242084 Marinobacter aquaeolei VT8 Hahella chejuensis KCTC 2396 622304 Hahella chejuensis KCTC 2396 Pseudomonas syringae pv syringae B728a Pseudomonas syringae pv phaseolicola 1448A Pseudomonas syringae pv tomato str DC3000 Pseudomonas fluorescens Pf 5 Pseudomonas fluorescens PfO 1 Pseudomonas putida KT2440 197146 Pseudomonas putida KT2440 Pseudomonas putida F1 199613 Pseudomonas putida F1 Pseudomonas putida GB 1 Pseudomonas putida W619 539771 Pseudomonas putida W619 Pseudomonas entomophila L48 111573 Pseudomonas entomophila L48 Pseudomonas mendocina ymp 289875 Pseudomonas mendocina ymp Pseudomonas stutzeri A1501 544793 Pseudomonas stutzeri A1501 Pseudomonas aeruginosa PAO1 958299 Pseudomonas aeruginosa PAO1 Pseudomonas aeruginosa UCBPP PA14 Pseudomonas aeruginosa PA7 421214 Pseudomonas aeruginosa PA7 Saccharophagus degradans 2 40 Cellvibrio japonicus Ueda107 719578 Cellvibrio japonicus Ueda107 Legionella pneumophila str Corby Legionella pneumophila subsp pneumophila str Philadelphia 1 220613 Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Legionella pneumophila str Lens 860729 Legionella pneumophila str. Lens Legionella pneumophila str Paris Coxiella burnetii RSA 331 386467 Coxiella burnetii RSA 331 Coxiella burnetii RSA 493 557735 Coxiella burnetii RSA 493 Coxiella burnetii Dugway 5J108 111 Francisella tularensis subsp tularensis SCHU S4 Francisella tularensis subsp tularensis FSC198 Francisella tularensis subsp tularensis WY96 3418 205593 Francisella tularensis subsp. tularensis WY96-3418 Francisella tularensis subsp holarctica OSU18 510358 Francisella tularensis subsp. holarctica OSU18 Francisella tularensis subsp holarctica 1072916 Francisella tularensis subsp. holarctica Francisella tularensis subsp holarctica FTNF002 00 Francisella tularensis subsp mediasiatica FSC147 Francisella tularensis subsp novicida U112 Francisella philomiragia subsp philomiragia ATCC 25017 Dichelobacter nodosus VCS1703A 351439 Dichelobacter nodosus VCS1703A Candidatus Ruthia magnifica str Cm Calyptogena magnifica Candidatus Vesicomyosocius okutanii HA 4790546 Candidatus Vesicomyosocius okutanii HA Thiomicrospira crunogena XCL 2 Halorhodospira halophila SL1 535975 Halorhodospira halophila SL1 Alkalilimnicola ehrlichei MLHE 1 242940 Alkalilimnicola ehrlichii MLHE-1 Nitrosococcus oceani ATCC 19707 147474 Nitrosococcus oceani ATCC 19707 Xanthomonas campestris pv campestris str 8004 Xanthomonas campestris pv campestris str ATCC 33913 Xanthomonas campestris pv campestris 625937 Xanthomonas campestris pv. campestris Xanthomonas oryzae pv oryzae KACC10331 540065 Xanthomonas oryzae pv. oryzae KACC 10331 Xanthomonas oryzae pv oryzae MAFF 311018 476733 Xanthomonas oryzae pv. oryzae MAFF 311018 Xanthomonas oryzae pv oryzae PXO99A Xanthomonas campestris pv vesicatoria str 85 10 Xanthomonas axonopodis pv citri str 306 Stenotrophomonas maltophilia K279a 1038096 Stenotrophomonas maltophilia K279a Xylella fastidiosa M23 432603 Xylella fastidiosa M23 Xylella fastidiosa Temecula1 220052 Xylella fastidiosa Temecula1 Xylella fastidiosa M12 432606 Xylella fastidiosa M12 Xylella fastidiosa 9a5c 771195 Xylella fastidiosa 9a5c Methylococcus capsulatus str Bath Nitrosomonas europaea ATCC 19718 371977 Nitrosomonas europaea ATCC 19718 Nitrosomonas eutropha C91 646047 Nitrosomonas eutropha C91 Nitrosospira multiformis ATCC 25196 774060 Nitrosospira multiformis ATCC 25196 Thiobacillus denitrificans ATCC 25259 744188 Thiobacillus denitrificans ATCC 25259 Methylobacillus flagellatus KT 646867 Methylobacillus flagellatus KT Azoarcus sp BH72 231148 Azoarcus sp. BH72 Azoarcus sp EbN1 816009 Aromatoleum aromaticum EbN1 Dechloromonas aromatica RCB 78282 Dechloromonas aromatica RCB Polynucleobacter sp QLW P1DMWA 1 Polynucleobacter necessarius STIR1 206794 Polynucleobacter necessarius subsp. necessarius STIR1 Cupriavidus taiwanensis 863452 Cupriavidus taiwanensis Ralstonia eutropha H16 875674 Ralstonia eutropha H16 Ralstonia eutropha JMP134 792108 Ralstonia eutropha JMP134 Ralstonia metallidurans CH34 406045 Cupriavidus metallidurans CH34 Ralstonia solanacearum GMI1000 1024939 Ralstonia solanacearum GMI1000 Ralstonia pickettii 12J 791878 Ralstonia pickettii 12J Burkholderia phytofirmans PsJN 582114 Burkholderia phytofirmans PsJN Burkholderia xenovorans LB400 406050 Burkholderia xenovorans LB400 Burkholderia phymatum STM815 915183 Burkholderia phymatum STM815 Burkholderia ambifaria AMMD 979193 Burkholderia ambifaria AMMD Burkholderia ambifaria MC40 6 55779 Burkholderia ambifaria MC40-6 Burkholderia cenocepacia AU 1054 203604 Burkholderia cenocepacia AU 1054 Burkholderia cenocepacia HI2424 203605 Burkholderia cenocepacia HI2424 Burkholderia cenocepacia MC0 3 Burkholderia sp 383 Burkholderia vietnamiensis G4 617096 Burkholderia vietnamiensis G4 Burkholderia multivorans ATCC 17616 60937 Burkholderia multivorans ATCC 17616 Burkholderia mallei NCTC 10247 501307 Burkholderia mallei NCTC 10247 Burkholderia mallei NCTC 10229 1011904 Burkholderia mallei NCTC 10229 Burkholderia mallei ATCC 23344 306841 Burkholderia mallei ATCC 23344 Burkholderia mallei SAVP1 501304 Burkholderia mallei SAVP1 Burkholderia pseudomallei K96243 953197 Burkholderia pseudomallei K96243 Burkholderia pseudomallei 1710b 1077963 Burkholderia pseudomallei 1710b Burkholderia pseudomallei 668 1077960 Burkholderia pseudomallei 668 Burkholderia pseudomallei 1106a 740063 Burkholderia pseudomallei 1106a Burkholderia thailandensis E264 90658 Burkholderia thailandensis E264 Herminiimonas arsenicoxydans 514905 Herminiimonas arsenicoxydans Janthinobacterium sp Marseille 675631 Janthinobacterium sp. Marseille Methylibium petroleiphilum PM1 4775635 Methylibium petroleiphilum PM1 Leptothrix cholodnii SP 6 Delftia acidovorans SPH 1 Acidovorax sp JS42 605303 Acidovorax Acidovorax avenae subsp citrulli AAC00 1 213797 Acidovorax citrulli AAC00-1 Verminephrobacter eiseniae EF01 2 885550 Verminephrobacter eiseniae EF01-2 Polaromonas naphthalenivorans CJ2 612655 Polaromonas naphthalenivorans CJ2 Polaromonas sp JS666 Rhodoferax ferrireducens T118 741379 Rhodoferax ferrireducens T118 Bordetella bronchiseptica RB50 133236 Bordetella bronchiseptica RB50 Bordetella parapertussis 12822 133237 Bordetella parapertussis 12822 Bordetella pertussis Tohama I 133240 Bordetella pertussis Tohama I Bordetella avium 197N 273958 Bordetella avium 197N Bordetella petrii DSM 12804 979013 Bordetella petrii DSM 12804 Neisseria gonorrhoeae FA 1090 770027 Neisseria gonorrhoeae FA 1090 Neisseria gonorrhoeae NCCP11945 557918 Neisseria gonorrhoeae NCCP11945 Neisseria meningitidis MC58 239089 Neisseria meningitidis MC58 Neisseria meningitidis Z2491 239091 Neisseria meningitidis Z2491 Neisseria meningitidis FAM18 252031 Neisseria meningitidis FAM18 Neisseria meningitidis 053442 743612 Neisseria meningitidis 053442 Chromobacterium violaceum ATCC 12472 602877 Chromobacterium violaceum ATCC 12472 Rhizobium etli CIAT 652 1073024 Rhizobium etli CIAT 652 Rhizobium etli CFN 42 161119 Rhizobium etli CFN 42 Rhizobium leguminosarum bv viciae 3841 Agrobacterium tumefaciens str C58 601809 Agrobacterium fabrum str. C58 Sinorhizobium meliloti 1021 1061321 Sinorhizobium meliloti 1021 Sinorhizobium medicae WSM419 679430 Sinorhizobium medicae WSM419 Bartonella henselae str Houston 1 450951 Bartonella henselae str. Houston-1 Bartonella quintana str Toulouse 450958 Bartonella quintana str. Toulouse Bartonella tribocorum CIP 105476 834239 Bartonella tribocorum CIP 105476 Bartonella bacilliformis KC583 257687 Bartonella bacilliformis KC583 Brucella canis ATCC 23365 676151 Brucella canis ATCC 23365 Brucella suis 1330 692274 Brucella suis 1330 Brucella suis ATCC 23445 789265 Brucella suis ATCC 23445 Brucella abortus S19 496196 Brucella abortus S19 Brucella melitensis biovar Abortus 2308 1038693 Brucella melitensis biovar Abortus 2308 Brucella abortus biovar 1 str 9 941 Brucella melitensis 16M 953845 Brucella melitensis bv. 1 str. 16M Brucella ovis ATCC 25840 480703 Brucella ovis ATCC 25840 Ochrobactrum anthropi ATCC 49188 784437 Ochrobactrum anthropi ATCC 49188 Mesorhizobium loti MAFF303099 1061318 Mesorhizobium loti MAFF303099 Mesorhizobium sp BNC1 Methylobacterium extorquens PA1 596639 Methylobacterium extorquens PA1 Methylobacterium populi BJ001 864840 Methylobacterium populi BJ001 Methylobacterium radiotolerans JCM 2831 348417 Methylobacterium radiotolerans JCM 2831 Methylobacterium sp 4 46 561781 Methylobacterium sp. 4-46 Beijerinckia indica subsp indica ATCC 9039 626622 Beijerinckia indica subsp. indica ATCC 9039 Xanthobacter autotrophicus Py2 595958 Xanthobacter autotrophicus Py2 Azorhizobium caulinodans ORS 571 1078826 Azorhizobium caulinodans ORS 571 Bradyrhizobium sp ORS278 Bradyrhizobium sp BTAi1 185184 Bradyrhizobium sp. BTAi1 Bradyrhizobium japonicum USDA 110 953841 Bradyrhizobium diazoefficiens USDA 110 Rhodopseudomonas palustris TIE 1 991414 Rhodopseudomonas palustris TIE-1 Rhodopseudomonas palustris CGA009 822797 Rhodopseudomonas palustris CGA009 Rhodopseudomonas palustris BisB5 480163 Rhodopseudomonas palustris BisB5 Rhodopseudomonas palustris HaA2 480177 Rhodopseudomonas palustris HaA2 Rhodopseudomonas palustris BisB18 480166 Rhodopseudomonas palustris BisB18 Rhodopseudomonas palustris BisA53 480169 Rhodopseudomonas palustris BisA53 Nitrobacter winogradskyi Nb 255 Nitrobacter hamburgensis X14 301225 Nitrobacter hamburgensis X14 Parvibaculum lavamentivorans DS 1 927547 Parvibaculum lavamentivorans DS-1 Maricaulis maris MCS10 213727 Maricaulis maris MCS10 Hyphomonas neptunium ATCC 15444 947995 Hyphomonas neptunium ATCC 15444 Caulobacter sp K31 Caulobacter crescentus CB15 810549 Caulobacter crescentus CB15 Silicibacter pomeroyi DSS 3 Silicibacter sp TM1040 Roseobacter denitrificans OCh 114 906057 Roseobacter denitrificans OCh 114 Jannaschia sp CCS1 Dinoroseobacter shibae DFL 12 880918 Dinoroseobacter shibae DFL 12 Rhodobacter sphaeroides ATCC 17029 587505 Rhodobacter sphaeroides ATCC 17029 Rhodobacter sphaeroides 2 4 1 Rhodobacter sphaeroides ATCC 17025 587509 Rhodobacter sphaeroides ATCC 17025 Paracoccus denitrificans PD1222 215157 Paracoccus denitrificans PD1222 Novosphingobium aromaticivorans DSM 12444 424222 Novosphingobium aromaticivorans DSM 12444 Erythrobacter litoralis HTCC2594 119414 Erythrobacter litoralis HTCC2594 Sphingopyxis alaskensis RB2256 220183 Sphingopyxis alaskensis RB2256 Sphingomonas wittichii RW1 1056256 Sphingomonas wittichii RW1 Zymomonas mobilis subsp mobilis ZM4 Rhodospirillum rubrum ATCC 11170 672388 Rhodospirillum rubrum ATCC 11170 Magnetospirillum magneticum AMB 1 Gluconobacter oxydans 621H 106963 Gluconobacter oxydans 621H Gluconacetobacter diazotrophicus PAl 5 953173 Gluconacetobacter diazotrophicus PAl 5 Granulibacter bethesdensis CGDNIH1 555938 Granulibacter bethesdensis CGDNIH1 Acidiphilium cryptum JF 5 435499 Acidiphilium cryptum JF-5 Rickettsia bellii RML369 C Rickettsia bellii OSU 85 389 Rickettsia typhi str Wilmington Rickettsia prowazekii str Madrid E 92213 Rickettsia prowazekii str. Madrid E Rickettsia felis URRWXCal2 25300 Rickettsia felis URRWXCal2 Rickettsia akari str Hartford Rickettsia rickettsii str Iowa Rickettsia rickettsii str Sheila Smith Rickettsia conorii str Malish 7 92209 Rickettsia conorii str. Malish 7 Rickettsia massiliae MTU5 214493 Rickettsia massiliae MTU5 Rickettsia canadensis str McKiel Orientia tsutsugamushi Boryong 311552 Orientia tsutsugamushi str. Boryong Orientia tsutsugamushi str Ikeda Anaplasma phagocytophilum HZ 961231 Anaplasma phagocytophilum HZ Anaplasma marginale str St Maries 97618 Anaplasma marginale str. St. Maries Ehrlichia ruminantium str Gardel Ehrlichia ruminantium str Welgevonden Ehrlichia canis str Jake Ehrlichia chaffeensis str Arkansas Wolbachia pipientis 379973 Wolbachia pipientis Wolbachia endosymbiont of Drosophila melanogaster 239068 Wolbachia endosymbiont of Drosophila melanogaster Wolbachia endosymbiont strain TRS of Brugia malayi 9967 Wolbachia endosymbiont strain TRS of Brugia malayi Neorickettsia sennetsu str Miyayama Candidatus Pelagibacter ubique HTCC1062 4778187 Candidatus Pelagibacter ubique HTCC1062 Magnetococcus sp MC 1 79418 Magnetococcus marinus MC-1 Acidobacteria bacterium Ellin345 1051412 Acidobacteria Solibacter usitatus Ellin6076 51461 Candidatus Solibacter usitatus Ellin6076 Geobacter sulfurreducens PCA 103413 Geobacter sulfurreducens PCA Geobacter metallireducens GS 15 Geobacter uraniireducens Rf4 321746 Geobacter uraniireducens Rf4 Pelobacter propionicus DSM 2379 741372 Pelobacter propionicus DSM 2379 Geobacter lovleyi SZ 625623 Geobacter lovleyi SZ Pelobacter carbinolicus DSM 2380 741363 Pelobacter carbinolicus DSM 2380 Desulfovibrio vulgaris subsp vulgaris DP4 Desulfovibrio vulgaris subsp vulgaris str Hildenborough Desulfovibrio desulfuricans subsp desulfuricans str G20 Lawsonia intracellularis PHE MN1 00 Desulfohalobium retbaense 487573 Desulfohalobium retbaense Desulfomicrobium baculatum Desulfotalea psychrophila LSv54 10792 Desulfotalea psychrophila LSv54 Desulfococcus oleovorans Hxd3 638036 Desulfococcus oleovorans Hxd3 Syntrophobacter fumaroxidans MPOB 563271 Syntrophobacter fumaroxidans MPOB Syntrophus aciditrophicus SB 140429 Syntrophus aciditrophicus SB Sorangium cellulosum So ce 56 Haliangium ochraceum 652441 Haliangium ochraceum Anaeromyxobacter sp Fw109 5 60668 Anaeromyxobacter sp. Fw109-5 Anaeromyxobacter dehalogenans 2CP C 272446 Anaeromyxobacter dehalogenans 2CP-C Myxococcus xanthus DK 1622 351447 Myxococcus xanthus DK 1622 Bdellovibrio bacteriovorus HD100 703708 Bdellovibrio bacteriovorus HD100 Denitrovibrio acetiphilus 915520 Denitrovibrio acetiphilus Sulfurimonas denitrificans DSM 1251 569599 Sulfurimonas denitrificans DSM 1251 Arcobacter butzleri RM4018 1067886 Arcobacter butzleri RM4018 Sulfurovum sp NBC37 1 Campylobacter jejuni subsp jejuni NCTC 11168 Campylobacter jejuni RM1221 746906 Campylobacter jejuni RM1221 Campylobacter jejuni subsp doylei 269 97 962627 Campylobacter jejuni subsp. doylei 269.97 Campylobacter jejuni subsp jejuni 81116 840506 Campylobacter jejuni subsp. jejuni 81116 Campylobacter jejuni subsp jejuni 81 176 Campylobacter curvus 525 92 Campylobacter concisus 13826 962613 Campylobacter concisus 13826 Campylobacter fetus subsp fetus 82 40 Campylobacter hominis ATCC BAA 381 Sulfurospirillum deleyianum 574085 Sulfurospirillum deleyianum Helicobacter pylori HPAG1 318985 Helicobacter pylori HPAG1 Helicobacter pylori 26695 133763 Helicobacter pylori 26695 Helicobacter pylori Shi470 417744 Helicobacter pylori Shi470 Helicobacter pylori J99 133760 Helicobacter pylori J99 Helicobacter acinonychis str Sheeba Helicobacter hepaticus ATCC 51449 618777 Helicobacter hepaticus ATCC 51449 Wolinella succinogenes DSM 1740 832895 Wolinella succinogenes DSM 1740 Nitratiruptor sp SB155 2 4775403 Nitratiruptor sp. SB155-2 Aquifex aeolicus VF5 1068688 Aquifex aeolicus VF5 Sulfurihydrogenibium sp YO3AOP1 304996 Sulfurihydrogenibium sp. YO3AOP1 Elusimicrobium minutum Pei191 391009 Elusimicrobium minutum Pei191 Dyadobacter fermentans 610677 Dyadobacter fermentans Spirosoma linguale 453264 Spirosoma linguale Cytophaga hutchinsonii ATCC 33406 672395 Cytophaga hutchinsonii ATCC 33406 Candidatus Amoebophilus asiaticus 5a2 4768029 Candidatus Amoebophilus asiaticus 5a2 Pedobacter heparinus 112737 Pedobacter heparinus Chitinophaga pinensis 900436 Chitinophaga pinensis Flavobacterium psychrophilum JIP02 86 Flavobacterium johnsoniae UW101 260722 Flavobacterium johnsoniae UW101 Gramella forsetii KT0803 490508 Gramella forsetii KT0803 Capnocytophaga ochracea 813827 Capnocytophaga ochracea Candidatus Sulcia muelleri GWSS 4769128 Candidatus Sulcia muelleri GWSS Bacteroides fragilis YCH46 1052516 Bacteroides fragilis YCH46 Bacteroides fragilis NCTC 9343 327695 Bacteroides fragilis NCTC 9343 Bacteroides thetaiotaomicron VPI 5482 14331 Bacteroides thetaiotaomicron VPI-5482 Bacteroides vulgatus ATCC 8482 371999 Bacteroides vulgatus ATCC 8482 Porphyromonas gingivalis ATCC 33277 305955 Porphyromonas gingivalis ATCC 33277 Porphyromonas gingivalis W83 919049 Porphyromonas gingivalis W83 Parabacteroides distasonis ATCC 8503 372002 Parabacteroides distasonis ATCC 8503 Rhodothermus marinus 457134 Rhodothermus marinus Salinibacter ruber DSM 13855 734324 Salinibacter ruber DSM 13855 Chlorobium tepidum TLS 775069 Chlorobium tepidum TLS Chlorobaculum parvum NCIB 8327 386871 Chlorobaculum parvum NCIB 8327 Prosthecochloris vibrioformis DSM 265 67858 Chlorobium phaeovibrioides DSM 265 Pelodictyon luteolum DSM 273 377323 Chlorobium luteolum DSM 273 Chlorobium chlorochromatii CaD3 452866 Chlorobium chlorochromatii CaD3 Chlorobium limicola DSM 245 845140 Chlorobium limicola DSM 245 Chlorobium phaeobacteroides DSM 266 67852 Chlorobium phaeobacteroides DSM 266 Chlorobium phaeobacteroides BS1 1013159 Chlorobium phaeobacteroides BS1 Chloroherpeton thalassium ATCC 35110 386867 Chloroherpeton thalassium ATCC 35110 Akkermansia muciniphila ATCC BAA 835 735120 Akkermansia muciniphila ATCC BAA-835 Opitutus terrae PB90 1 604141 Opitutus terrae PB90-1 Methylacidiphilum infernorum V4 4795761 Methylacidiphilum infernorum V4 Chlamydia trachomatis D UW 3 CX Chlamydia trachomatis A HAR 13 Chlamydia trachomatis 434 Bu Chlamydia trachomatis L2b UCH 1 proctitis Chlamydia muridarum Nigg 994509 Chlamydia muridarum Nigg Chlamydophila abortus S26 3 Chlamydophila caviae GPIC 724713 Chlamydophila caviae GPIC Chlamydophila felis Fe C 56 Chlamydophila pneumoniae AR39 853668 Chlamydophila pneumoniae AR39 Chlamydophila pneumoniae J138 1001672 Chlamydophila pneumoniae J138 Chlamydophila pneumoniae CWL029 853664 Chlamydophila pneumoniae CWL029 Chlamydophila pneumoniae TW 183 773713 Chlamydophila pneumoniae TW-183 Candidatus Protochlamydia amoebophila UWE25 698513 Candidatus Protochlamydia amoebophila UWE25 Rhodopirellula baltica SH 1 298147 Rhodopirellula baltica SH 1 Planctomyces limnophilus 839868 Planctomyces limnophilus Borrelia afzelii PKo 539774 Borrelia afzelii PKo Borrelia garinii PBi 46488 Borrelia garinii PBi Borrelia burgdorferi B31 1068680 Borrelia burgdorferi B31 Borrelia hermsii DAH 199955 Borrelia hermsii DAH Treponema pallidum subsp pallidum SS14 1092069 Treponema pallidum subsp. pallidum SS14 Treponema pallidum subsp pallidum str Nichols Treponema denticola ATCC 35405 205400 Treponema denticola ATCC 35405 Brachyspira murdochii 502321 Brachyspira murdochii Leptospira borgpetersenii serovar Hardjo bovis L550 449323 Leptospira borgpetersenii serovar Hardjo-bovis str. L550 Leptospira borgpetersenii serovar Hardjo bovis JB197 Leptospira interrogans serovar Lai str 56601 Leptospira interrogans serovar Copenhageni str Fiocruz L1 130 Leptospira biflexa serovar Patoc strain Patoc 1 Paris 250125 Leptospira biflexa serovar Patoc Leptospira biflexa serovar Patoc strain Patoc 1 Ames 250125 Leptospira biflexa serovar Patoc Mycoplasma hyopneumoniae J 763623 Mycoplasma hyopneumoniae J Mycoplasma hyopneumoniae 7448 455769 Mycoplasma hyopneumoniae 7448 Mycoplasma hyopneumoniae 232 404747 Mycoplasma hyopneumoniae 232 Mycoplasma synoviae 53 333175 Mycoplasma synoviae 53 Mycoplasma agalactiae PG2 468606 Mycoplasma agalactiae PG2 Mycoplasma pulmonis UAB CTIP 795275 Mycoplasma pulmonis UAB CTIP Mycoplasma arthritidis 158L3 1 Mycoplasma mobile 163K 7030 Mycoplasma mobile 163K Ureaplasma parvum serovar 3 str ATCC 700970 Ureaplasma parvum serovar 3 str ATCC 27815 Mycoplasma penetrans HF 2 Mycoplasma pneumoniae M129 795271 Mycoplasma pneumoniae M129 Mycoplasma genitalium G37 125688 Mycoplasma genitalium G37 Mycoplasma gallisepticum R 227134 Mycoplasma gallisepticum str. R Mycoplasma mycoides subsp mycoides SC str PG1 Mycoplasma capricolum subsp capricolum ATCC 27343 2889 Mycoplasma capricolum subsp. capricolum ATCC 27343 Mesoplasma florum L1 480146 Mesoplasma florum L1 Onion yellows phytoplasma OY M Aster yellows witches broom phytoplasma AYWB 1096681 Aster yellows witches'-broom phytoplasma AYWB Candidatus Phytoplasma mali 306766 Candidatus Phytoplasma mali Acholeplasma laidlawii PG 8A 1038743 Acholeplasma laidlawii PG-8A Streptobacillus moniliformis 841419 Streptobacillus moniliformis Leptotrichia buccalis 538739 Leptotrichia buccalis Sebaldella termitidis 987869 Sebaldella termitidis Fusobacterium nucleatum subsp nucleatum ATCC 25586 Desulfitobacterium hafniense Y51 184301 Desulfitobacterium hafniense Y51 Heliobacterium modesticaldum Ice1 473300 Heliobacterium modesticaldum Ice1 Moorella thermoacetica ATCC 39073 59737 Moorella thermoacetica ATCC 39073 Desulfotomaculum reducens MI 1 Desulfotomaculum acetoxidans 409962 Desulfotomaculum acetoxidans Pelotomaculum thermopropionicum SI 742079 Pelotomaculum thermopropionicum SI Candidatus Desulforudis audaxviator MP104C 581464 Candidatus Desulforudis audaxviator MP104C Carboxydothermus hydrogenoformans Z 2901 351437 Carboxydothermus hydrogenoformans Z-2901 Syntrophomonas wolfei subsp wolfei str Goettingen Symbiobacterium thermophilum IAM 14863 640453 Symbiobacterium thermophilum IAM 14863 Natranaerobius thermophilus JW NM WN LF Veillonella parvula 528374 Veillonella parvula Bacillus thuringiensis serovar konkukian str 97 27 594928 Bacillus thuringiensis serovar konkukian str. 97-27 Bacillus thuringiensis str Al Hakam 862092 Bacillus thuringiensis str. Al Hakam Bacillus anthracis str Sterne 697387 Bacillus anthracis str. Sterne Bacillus anthracis str Ames Ancestor 1025970 Bacillus anthracis str. 'Ames Ancestor' Bacillus anthracis str Ames 426216 Bacillus anthracis str. Ames Bacillus cereus E33L 873215 Bacillus cereus E33L Bacillus cereus ATCC 14579 1024605 Bacillus cereus ATCC 14579 Bacillus weihenstephanensis KBAB4 1060376 Bacillus weihenstephanensis KBAB4 Bacillus cereus ATCC 10987 307734 Bacillus cereus ATCC 10987 Bacillus cereus subsp cytotoxis NVH 391 98 718472 Bacillus cytotoxicus NVH 391-98 Bacillus subtilis subsp subtilis str 168 21367 Bacillus subtilis subsp. subtilis str. 168 Bacillus amyloliquefaciens FZB42 370090 Bacillus amyloliquefaciens FZB42 Bacillus pumilus SAFR 032 561927 Bacillus pumilus SAFR-032 Bacillus licheniformis ATCC 14580 37595 Bacillus licheniformis Geobacillus thermodenitrificans NG80 2 Geobacillus kaustophilus HTA426 225726 Geobacillus kaustophilus HTA426 Staphylococcus aureus subsp aureus Mu3 Staphylococcus aureus subsp aureus Mu50 Staphylococcus aureus subsp aureus N315 Staphylococcus aureus subsp aureus JH9 Staphylococcus aureus subsp aureus JH1 Staphylococcus aureus subsp aureus MRSA252 Staphylococcus aureus RF122 135652 Staphylococcus aureus RF122 Staphylococcus aureus subsp aureus NCTC 8325 Staphylococcus aureus subsp aureus USA300 TCH1516 Staphylococcus aureus subsp aureus USA300 954284 Staphylococcus aureus subsp. aureus USA300 Staphylococcus aureus subsp aureus COL 316894 Staphylococcus aureus subsp. aureus COL Staphylococcus aureus subsp aureus str Newman Staphylococcus aureus subsp aureus MSSA476 Staphylococcus aureus subsp aureus MW2 Staphylococcus epidermidis ATCC 12228 477169 Staphylococcus epidermidis ATCC 12228 Staphylococcus epidermidis RP62A 859694 Staphylococcus epidermidis RP62A Staphylococcus haemolyticus JCSC1435 111355 Staphylococcus haemolyticus JCSC1435 Staphylococcus saprophyticus subsp saprophyticus ATCC 15305 Streptococcus pyogenes SSI 1 Streptococcus pyogenes MGAS315 955651 Streptococcus pyogenes MGAS315 Streptococcus pyogenes M1 GAS 771186 Streptococcus pyogenes M1 GAS Streptococcus pyogenes MGAS5005 173021 Streptococcus pyogenes MGAS5005 Streptococcus pyogenes MGAS8232 356514 Streptococcus pyogenes MGAS8232 Streptococcus pyogenes MGAS10750 56706 Streptococcus pyogenes MGAS10750 Streptococcus pyogenes str Manfredo 771191 Streptococcus pyogenes str. Manfredo Streptococcus pyogenes MGAS10394 472997 Streptococcus pyogenes MGAS10394 Streptococcus pyogenes MGAS9429 56693 Streptococcus pyogenes MGAS9429 Streptococcus pyogenes MGAS2096 56685 Streptococcus pyogenes MGAS2096 Streptococcus pyogenes MGAS10270 224298 Streptococcus pyogenes MGAS10270 Streptococcus pyogenes MGAS6180 149095 Streptococcus pyogenes MGAS6180 Streptococcus agalactiae 2603V R Streptococcus agalactiae A909 607801 Streptococcus agalactiae A909 Streptococcus agalactiae NEM316 100373 Streptococcus agalactiae NEM316 Streptococcus thermophilus LMG 18311 792116 Streptococcus thermophilus LMG 18311 Streptococcus thermophilus CNRZ1066 993586 Streptococcus thermophilus CNRZ1066 Streptococcus thermophilus LMD 9 Streptococcus mutans UA159 802575 Streptococcus mutans UA159 Streptococcus suis 98HAH33 721148 Streptococcus suis 98HAH33 Streptococcus suis 05ZYH33 721145 Streptococcus suis 05ZYH33 Streptococcus pneumoniae D39 388640 Streptococcus pneumoniae D39 Streptococcus pneumoniae R6 1024091 Streptococcus pneumoniae R6 Streptococcus pneumoniae TIGR4 1089074 Streptococcus pneumoniae TIGR4 Streptococcus pneumoniae CGSP14 830466 Streptococcus pneumoniae CGSP14 Streptococcus pneumoniae Hungary19A 6 Streptococcus gordonii str Challis substr CH1 Streptococcus sanguinis SK36 1018562 Streptococcus sanguinis SK36 Lactococcus lactis subsp cremoris SK11 Lactococcus lactis subsp cremoris MG1363 Lactococcus lactis subsp lactis Il1403 Enterococcus faecalis V583 14326 Enterococcus faecalis V583 Lactobacillus acidophilus NCFM 220596 Lactobacillus acidophilus NCFM Lactobacillus helveticus DPC 4571 262077 Lactobacillus helveticus DPC 4571 Lactobacillus gasseri ATCC 33323 502406 Lactobacillus gasseri ATCC 33323 Lactobacillus johnsonii NCC 533 133241 Lactobacillus johnsonii NCC 533 Lactobacillus delbrueckii subsp bulgaricus ATCC BAA 365 Lactobacillus delbrueckii subsp bulgaricus ATCC 11842 Lactobacillus casei BL23 806498 Lactobacillus casei BL23 Lactobacillus casei ATCC 334 161560 Lactobacillus casei ATCC 334 Lactobacillus sakei subsp sakei 23K Lactobacillus brevis ATCC 367 579786 Lactobacillus brevis ATCC 367 Lactobacillus plantarum WCFS1 433663 Lactobacillus plantarum WCFS1 Pediococcus pentosaceus ATCC 25745 367251 Pediococcus pentosaceus ATCC 25745 Lactobacillus fermentum IFO 3956 717190 Lactobacillus fermentum IFO 3956 Lactobacillus reuteri F275 537659 Lactobacillus reuteri F275 Leuconostoc mesenteroides subsp mesenteroides ATCC 8293 340506 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Leuconostoc citreum KM20 151728 Leuconostoc citreum KM20 Oenococcus oeni PSU 1 Lactobacillus salivarius UCC118 571382 Lactobacillus salivarius UCC118 Listeria monocytogenes EGD e 998464 Listeria monocytogenes EGD-e Listeria monocytogenes str 4b F2365 Listeria welshimeri serovar 6b str SLCC5334 Listeria innocua Clip11262 220620 Listeria innocua Clip11262 Lysinibacillus sphaericus C3 41 480707 Lysinibacillus sphaericus C3-41 Oceanobacillus iheyensis HTE831 486370 Oceanobacillus iheyensis HTE831 Bacillus clausii KSM K16 337359 Bacillus clausii KSM-K16 Bacillus halodurans C 125 327700 Bacillus halodurans C-125 Exiguobacterium sibiricum 255 15 Alicyclobacillus acidocaldarius 1064409 Alicyclobacillus acidocaldarius Clostridium acetobutylicum ATCC 824 953189 Clostridium acetobutylicum ATCC 824 Clostridium novyi NT 275342 Clostridium novyi NT Clostridium perfringens ATCC 13124 353424 Clostridium perfringens ATCC 13124 Clostridium perfringens str 13 Clostridium perfringens SM101 874954 Clostridium perfringens SM101 Clostridium botulinum E3 str Alaska E43 Clostridium botulinum B str Eklund 17B Clostridium beijerinckii NCIMB 8052 619368 Clostridium beijerinckii NCIMB 8052 Clostridium botulinum A str ATCC 3502 Clostridium botulinum A str ATCC 19397 Clostridium botulinum A str Hall 461754 Clostridium botulinum A str. Hall Clostridium botulinum F str Langeland 461752 Clostridium botulinum F str. Langeland Clostridium botulinum B1 str Okra 719576 Clostridium botulinum B1 str. Okra Clostridium botulinum A3 str Loch Maree Clostridium kluyveri DSM 555 306004 Clostridium kluyveri DSM 555 Clostridium tetani E88 703452 Clostridium tetani E88 Clostridium phytofermentans ISDg 732477 Clostridium phytofermentans ISDg Anaerococcus prevotii 210969 Anaerococcus prevotii Finegoldia magna ATCC 29328 1050727 Finegoldia magna ATCC 29328 Alkaliphilus metalliredigens QYMF 1052152 Alkaliphilus metalliredigens QYMF Alkaliphilus oremlandii OhILAs 145289 Alkaliphilus oremlandii OhILAs Clostridium difficile 630 953193 Clostridium difficile 630 Thermoanaerobacter pseudethanolicus ATCC 33223 680070 Thermoanaerobacter pseudethanolicus ATCC 33223 Thermoanaerobacter sp X514 Thermoanaerobacter tengcongensis MB4 605111 Thermoanaerobacter tengcongensis MB4 Caldicellulosiruptor saccharolyticus DSM 8903 371049 Caldicellulosiruptor saccharolyticus DSM 8903 Clostridium thermocellum ATCC 27405 480252 Clostridium thermocellum ATCC 27405 Sanguibacter keddieii 774573 Sanguibacter keddieii Jonesia denitrificans 816534 Jonesia denitrificans Xylanimonas cellulosilytica 556991 Xylanimonas cellulosilytica Cellulomonas flavigena 301680 Cellulomonas flavigena Beutenbergia cavernae 548813 Beutenbergia cavernae Brachybacterium faecium 241752 Brachybacterium faecium Kytococcus sedentarius 720597 Kytococcus sedentarius Arthrobacter aurescens TC1 744977 Arthrobacter aurescens TC1 Arthrobacter sp FB24 272435 Arthrobacter sp. FB24 Renibacterium salmoninarum ATCC 33209 362159 Renibacterium salmoninarum ATCC 33209 Kocuria rhizophila DC2201 300437 Kocuria rhizophila DC2201 Clavibacter michiganensis subsp michiganensis NCPPB 382 Clavibacter michiganensis subsp sepedonicus Leifsonia xyli subsp xyli str CTCB07 Kineococcus radiotolerans SRS30216 731759 Kineococcus radiotolerans SRS30216 Nocardiopsis dassonvillei 176926 Nocardiopsis dassonvillei Thermobifida fusca YX 731365 Thermobifida fusca YX Thermomonospora curvata 802001 Thermomonospora curvata Thermobispora bispora 751329 Thermobispora bispora Streptosporangium roseum 751318 Streptosporangium roseum Acidothermus cellulolyticus 11B 321742 Acidothermus cellulolyticus 11B Frankia sp CcI3 Frankia alni ACN14a 370078 Frankia alni ACN14a Frankia sp EAN1pec Mycobacterium gilvum PYR GCK Mycobacterium vanbaalenii PYR 1 Mycobacterium sp KMS Mycobacterium sp MCS Mycobacterium sp JLS Mycobacterium smegmatis str MC2 155 Mycobacterium bovis AF2122 97 1065267 Mycobacterium bovis AF2122/97 Mycobacterium bovis BCG str Pasteur 1173P2 57646 Mycobacterium bovis BCG str. Pasteur 1173P2 Mycobacterium tuberculosis F11 713998 Mycobacterium tuberculosis F11 Mycobacterium tuberculosis H37Ra 351989 Mycobacterium tuberculosis H37Ra Mycobacterium tuberculosis H37Rv 232551 Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis CDC1551 232558 Mycobacterium tuberculosis CDC1551 Mycobacterium marinum M 256366 Mycobacterium marinum M Mycobacterium ulcerans Agy99 675335 Mycobacterium ulcerans Agy99 Mycobacterium leprae TN 795267 Mycobacterium leprae TN Mycobacterium avium 104 677345 Mycobacterium avium 104 Mycobacterium avium subsp paratuberculosis K 10 Mycobacterium abscessus 809476 Mycobacterium abscessus Gordonia bronchialis 74066 Gordonia bronchialis Tsukamurella paurometabola 700197 Tsukamurella paurometabola Nocardia farcinica IFM 10152 1028146 Nocardia farcinica IFM 10152 Rhodococcus sp RHA1 Saccharomonospora viridis 999747 Saccharomonospora viridis Saccharopolyspora erythraea NRRL 2338 495747 Saccharopolyspora erythraea NRRL 2338 Actinosynnema mirum Nakamurella multipartita 928874 Nakamurella multipartita Geodermatophilus obscurus 824343 Geodermatophilus obscurus Salinispora arenicola CNS 205 Salinispora tropica CNB 440 Stackebrandtia nassauensis 398479 Stackebrandtia nassauensis Streptomyces avermitilis MA 4680 1050021 Streptomyces avermitilis MA-4680 Streptomyces coelicolor A3 2 954695 Streptomyces coelicolor A3(2) Streptomyces griseus subsp griseus NBRC 13350 Catenulispora acidiphila 374802 Catenulispora acidiphila Kribbella flavida 276167 Kribbella flavida Nocardioides sp JS614 Propionibacterium acnes KPA171202 7026 Propionibacterium acnes KPA171202 Corynebacterium glutamicum R 827756 Corynebacterium glutamicum R Corynebacterium glutamicum ATCC 13032 685945 Corynebacterium glutamicum ATCC 13032 Corynebacterium efficiens YS 314 724680 Corynebacterium efficiens YS-314 Corynebacterium diphtheriae NCTC 13129 655178 Corynebacterium diphtheriae NCTC 13129 Corynebacterium urealyticum DSM 7109 532734 Corynebacterium urealyticum DSM 7109 Corynebacterium jeikeium K411 402801 Corynebacterium jeikeium K411 Bifidobacterium longum DJO10A 86434 Bifidobacterium longum DJO10A Bifidobacterium longum NCC2705 957437 Bifidobacterium longum NCC2705 Bifidobacterium adolescentis ATCC 15703 349962 Bifidobacterium adolescentis ATCC 15703 Tropheryma whipplei TW08 27 Tropheryma whipplei str Twist Acidimicrobium ferrooxidans 1004025 Acidimicrobium ferrooxidans Cryptobacterium curtum 10666 Cryptobacterium curtum Eggerthella lenta 696825 Eggerthella lenta Slackia heliotrinireducens 696845 Slackia heliotrinireducens Atopobium parvulum 1068920 Atopobium parvulum Conexibacter woesei 720138 Conexibacter woesei Rubrobacter xylanophilus DSM 9941 100522 Rubrobacter xylanophilus DSM 9941 Synechococcus sp WH 7803 Synechococcus sp CC9311 Synechococcus sp CC9605 Synechococcus sp WH 8102 Synechococcus sp CC9902 Prochlorococcus marinus subsp marinus str CCMP1375 Prochlorococcus marinus str MIT 9211 460605 Prochlorococcus marinus str. MIT 9211 Prochlorococcus marinus str NATL2A 164933 Prochlorococcus marinus str. NATL2A Prochlorococcus marinus str NATL1A Prochlorococcus marinus str MIT 9515 Prochlorococcus marinus subsp pastoris str CCMP1986 790087 Prochlorococcus marinus subsp. pastoris str. CCMP1986 Prochlorococcus marinus str AS9601 Prochlorococcus marinus str MIT 9301 Prochlorococcus marinus str MIT 9215 Prochlorococcus marinus str MIT 9312 440057 Prochlorococcus marinus str. MIT 9312 Prochlorococcus marinus str MIT 9313 440053 Prochlorococcus marinus str. MIT 9313 Prochlorococcus marinus str MIT 9303 164938 Prochlorococcus marinus str. MIT 9303 Synechococcus sp RCC307 Synechococcus elongatus PCC 7942 319258 Synechococcus elongatus PCC 7942 Synechococcus elongatus PCC 6301 761880 Synechococcus elongatus PCC 6301 Nostoc sp PCC 7120 Anabaena variabilis ATCC 29413 376279 Anabaena variabilis ATCC 29413 Nostoc punctiforme PCC 73102 134995 Nostoc punctiforme PCC 73102 Trichodesmium erythraeum IMS101 340510 Trichodesmium erythraeum IMS101 Cyanothece sp ATCC 51142 Microcystis aeruginosa NIES 843 Synechocystis sp PCC 6803 Synechococcus sp PCC 7002 Acaryochloris marina MBIC11017 434780 Acaryochloris marina MBIC11017 Thermosynechococcus elongatus BP 1 Synechococcus sp JA 3 3Ab Synechococcus sp JA 2 3B a 2 13 Gloeobacter violaceus PCC 7421 37488 Gloeobacter violaceus PCC 7421 Roseiflexus castenholzii DSM 13941 710109 Roseiflexus castenholzii DSM 13941 Roseiflexus sp RS 1 Chloroflexus aurantiacus J 10 fl Herpetosiphon aurantiacus ATCC 23779 187093 Herpetosiphon aurantiacus DSM 785 Sphaerobacter thermophilus 74085 Sphaerobacter thermophilus Thermobaculum terrenum 4745145 Thermobaculum terrenum Dehalococcoides sp CBDB1 Dehalococcoides sp BAV1 Dehalococcoides ethenogenes 195 1073578 Dehalococcoides ethenogenes 195 Thermosipho melanesiensis BI429 389584 Thermosipho melanesiensis BI429 Fervidobacterium nodosum Rt17 B1 Thermotoga maritima MSB8 205396 Thermotoga maritima MSB8 Thermotoga sp RQ2 Thermotoga petrophila RKU 1 183077 Thermotoga petrophila RKU-1 Thermotoga lettingae TMO 83398 Thermotoga lettingae TMO Petrotoga mobilis SJ95 428768 Petrotoga mobilis SJ95 Thermus thermophilus HB8 497277 Thermus thermophilus HB8 Thermus thermophilus HB27 333164 Thermus thermophilus HB27 Meiothermus ruber 276560 Meiothermus ruber Meiothermus silvanus 864749 Meiothermus silvanus Deinococcus geothermalis DSM 11300 19591 Deinococcus geothermalis DSM 11300 Deinococcus radiodurans R1 103411 Deinococcus radiodurans R1 ot:substitutionCount ml tree true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true 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