{"sha": "19ec8a2da4b35c55075f155f9fb4d01281774fe5", "data": {"nexml": {"@generator": "Phylografter nexml-json exporter", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "validator of NexSON constraints as well as constraints that would allow a study to be imported into the Open Tree of Life's phylogenetic synthesis tools", "@id": "peyotl-validator", "@name": "validate_ot_nexson.py", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": ["--embed", "--agent-only"], "otherProperty": [{"name": "pythonVersion", "value": "2.7.5+"}, {"name": "pythonImplementation", "value": "CPython"}]}}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0"}]}, "^ot:annotationEvents": {"annotation": [{"@dateCreated": "2015-09-29T15:31:21.195Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"searchContext": {"$": "Ascomycetes"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}, {"@active": true, "@valid": true, "new": {"$": "$1"}, "old": {"$": "^(\\S*\\s+\\S*).*"}}]}, "useFuzzyMatching": true}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2015-09-29T15:31:21.195Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": []}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924855", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924855"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924860", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924860"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924861", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924861"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924862", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924862"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924863", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924863"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924864", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924864"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924865", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924865"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924866", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924866"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924867", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924867"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924868", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924868"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924879", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924879"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924880", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924880"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924881", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924881"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924885", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924885"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924886", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924886"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924887", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924887"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924888", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924888"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924894", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924894"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924895", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924895"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924896", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924896"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924898", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924898"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924899", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924899"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924901", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924901"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924902", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924902"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924904", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924904"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924905", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924905"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924911", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924911"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924912", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924912"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924913", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924913"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924914", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924914"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924915", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924915"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924916", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924916"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924921", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924921"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924922", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924922"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924925", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924925"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924926", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924926"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924927", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924927"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924928", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924928"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924929", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924929"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924930", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924930"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924933", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924933"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924934", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924934"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924936", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924936"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924937", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924937"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924939", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924939"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924940", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924940"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924941", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924941"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924943", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924943"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924944", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924944"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924945", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924945"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924946", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924946"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924947", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924947"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924948", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924948"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924950", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924950"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924951", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924951"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924952", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924952"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924953", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924953"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924954", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924954"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924955", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924955"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924960", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924960"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924961", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924961"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924962", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924962"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924965", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924965"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924966", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924966"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924969", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924969"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924971", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924971"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924973", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924973"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924976", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924976"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924977", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924977"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924978", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924978"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924980", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924980"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924981", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924981"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924982", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924982"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924985", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924985"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924986", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924986"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924987", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924987"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924988", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924988"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924989", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924989"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node924990", "@treesID": "trees2486", "@treeID": "tree5347", "@nodeID": "node924990"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu359560", "otu359563", "otu359564", "otu359569", "otu359570", "otu359572", "otu359576", "otu359582", "otu359584", "otu359588", "otu359591", "otu359601", "otu359607", "otu359614", "otu359617", "otu359620", "otu359631", "otu359633", "otu359639", "otu359641"], "refersTo": {"@top": "otus", "@idref": "otus2486", "@otusID": "otus2486"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu359561", "otu359567", "otu359571", "otu359577", "otu359583", "otu359595", "otu359597", "otu359609", "otu359612", "otu359619", "otu359623", "otu359627", "otu359629"], "refersTo": {"@top": "otus", "@idref": "otus2486", "@otusID": "otus2486"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu359562", "otu359580"], "refersTo": {"@top": "otus", "@idref": "otus2486", "@otusID": "otus2486"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu359565", "otu359573", "otu359586", "otu359587", "otu359594", "otu359606", "otu359608", "otu359628", "otu359635", "otu359638"], "refersTo": {"@top": "otus", "@idref": "otus2486", "@otusID": "otus2486"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu359568", "otu359579", "otu359616", "otu359640"], "refersTo": {"@top": "otus", "@idref": "otus2486", "@otusID": "otus2486"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu359575", "otu359643"], "refersTo": {"@top": "otus", "@idref": "otus2486", "@otusID": "otus2486"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu359578", "otu359600"], "refersTo": {"@top": "otus", "@idref": "otus2486", "@otusID": "otus2486"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu359581", "otu359615"], "refersTo": {"@top": "otus", "@idref": "otus2486", "@otusID": "otus2486"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu359585", "otu359630", "otu359632"], "refersTo": {"@top": "otus", "@idref": "otus2486", "@otusID": "otus2486"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu359589", "otu359592", "otu359598", "otu359611", "otu359621", "otu359622", "otu359625", "otu359642"], "refersTo": {"@top": "otus", "@idref": "otus2486", "@otusID": "otus2486"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu359590", "otu359593", "otu359613"], "refersTo": {"@top": "otus", "@idref": "otus2486", "@otusID": "otus2486"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu359596", "otu359636", "otu359637"], "refersTo": {"@top": "otus", "@idref": "otus2486", "@otusID": "otus2486"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu359603", "otu359605"], "refersTo": {"@top": "otus", "@idref": "otus2486", "@otusID": "otus2486"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu359604", "otu359634"], "refersTo": {"@top": "otus", "@idref": "otus2486", "@otusID": "otus2486"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu359610", "otu359624", "otu359626"], "refersTo": {"@top": "otus", "@idref": "otus2486", "@otusID": "otus2486"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree5347", "@treesID": "trees2486", "@treeID": "tree5347"}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": ["tree5347"], "^ot:comment": "Couldn't find an article with that exact title, but the following (different journal) is very close, and I bet it's the correct reference:\n\nhttp://dx.doi.org/10.1111/1574-6941.12393\n\nInterspecific hybridization and bioactive alkaloid variation increases diversity in endophytic Epichlo\u00eb species of Bromus laevipes\nNikki D. Charlton, Kelly D. Craven, Michelle E. Afkhami, Bradley A. Hall, Sita R. Ghimire, Carolyn A. Young\nFEMS Microbiology Ecology 2014", "^ot:curatorName": ["Romina Gazis", "Jonathan A Rees"], "^ot:dataDeposit": {"@href": "http://purl.org/phylo/treebase/phylows/study/TB2:S13399"}, "^ot:focalClade": 908827, "^ot:focalCladeOTTTaxonName": "Epichloe", "^ot:notIntendedForSynthesis": false, "^ot:otusElementOrder": ["otus2486"], "^ot:studyId": "pg_2486", "^ot:studyPublication": {"@href": ""}, "^ot:studyPublicationReference": "Charlton N., Craven K., Afkhami M., Hall B., Swoboda G., Ghimire S.R., & Young C. 2012. Genetic diversity in epichloid endophytes of Bromus laevipes provides evidence for independent hybridization events. Molecular Ecology, .", "^ot:studyYear": 2012, "^ot:tag": ["pdf not found"], "^ot:treesElementOrder": ["trees2486"], "^xhtml:license": {"@href": "http://creativecommons.org/publicdomain/zero/1.0/", "@name": "CC0"}, "otusById": {"otus2486": {"otuById": {"otu359560": {"^ot:originalLabel": "Neotyphodium  sp. FaTG2", "^ot:ottId": 741639, "^ot:ottTaxonName": "Neotyphodium", "^ot:treebaseOTUId": "Tl900726"}, "otu359561": {"^ot:originalLabel": "Epichloe species BlaTG-2 P4C1", "^ot:ottId": 908827, "^ot:ottTaxonName": "Epichloe", "^ot:treebaseOTUId": "Tl900727"}, "otu359562": {"^ot:originalLabel": "Epichloe glyceriae  Gs", "^ot:ottId": 89725, "^ot:ottTaxonName": "Epichloe glyceriae", "^ot:treebaseOTUId": "Tl900728"}, "otu359563": {"^ot:originalLabel": "Neotyphodium  species Evi", "^ot:ottId": 741639, "^ot:ottTaxonName": "Neotyphodium", "^ot:treebaseOTUId": "Tl900729"}, "otu359564": {"^ot:originalLabel": "Neotyphodium species Pau 2", "^ot:ottId": 741639, "^ot:ottTaxonName": "Neotyphodium", "^ot:treebaseOTUId": "Tl900730"}, "otu359565": {"^ot:originalLabel": "Epichloe typhina  Php 2", "^ot:ottId": 103011, "^ot:ottTaxonName": "Epichloe typhina", "^ot:treebaseOTUId": "Tl900731"}, "otu359566": {"^ot:originalLabel": "Epichloe clarkii  Hl", "^ot:ottId": 4058905, "^ot:ottTaxonName": "Epichloe clarkii", "^ot:treebaseOTUId": "Tl900732"}, "otu359567": {"^ot:originalLabel": "Epichloe species BlaTG-2 P3C1", "^ot:ottId": 908827, "^ot:ottTaxonName": "Epichloe", "^ot:treebaseOTUId": "Tl900733"}, "otu359568": {"^ot:originalLabel": "Neotyphodium pampeanum  Ba 3", "^ot:ottId": 454281, "^ot:ottTaxonName": "Neotyphodium pampeanum", "^ot:treebaseOTUId": "Tl900734"}, "otu359569": {"^ot:originalLabel": "Neotyphodium species Fpa", "^ot:ottId": 741639, "^ot:ottTaxonName": "Neotyphodium", "^ot:treebaseOTUId": "Tl900735"}, "otu359570": {"^ot:originalLabel": "Neotyphodium species Sro", "^ot:ottId": 741639, "^ot:ottTaxonName": "Neotyphodium", "^ot:treebaseOTUId": "Tl900736"}, "otu359571": {"^ot:originalLabel": "Epichloe species BlaTG-3 P10C2 ", "^ot:ottId": 908827, "^ot:ottTaxonName": "Epichloe", "^ot:treebaseOTUId": "Tl900737"}, "otu359572": {"^ot:originalLabel": "Neotyphodium species  Fpa", "^ot:ottId": 741639, "^ot:ottTaxonName": "Neotyphodium", "^ot:treebaseOTUId": "Tl900738"}, "otu359573": {"^ot:originalLabel": "Epichloe typhina P6", "^ot:ottId": 103011, "^ot:ottTaxonName": "Epichloe typhina", "^ot:treebaseOTUId": "Tl900739"}, "otu359574": {"^ot:originalLabel": "Epichloe elymi  Ev", "^ot:ottId": 745528, "^ot:ottTaxonName": "Epichloe elymi", "^ot:treebaseOTUId": "Tl900740"}, "otu359575": {"^ot:originalLabel": "Epichloe festucae  Frr", "^ot:ottId": 137209, "^ot:ottTaxonName": "Epichloe festucae", "^ot:treebaseOTUId": "Tl900741"}, "otu359576": {"^ot:originalLabel": "Neotyphodium species  Hbo", "^ot:ottId": 741639, "^ot:ottTaxonName": "Neotyphodium", "^ot:treebaseOTUId": "Tl900742"}, "otu359577": {"^ot:originalLabel": "Epichloe species BlaTG-2 P9C2", "^ot:ottId": 908827, "^ot:ottTaxonName": "Epichloe", "^ot:treebaseOTUId": "Tl900743"}, "otu359578": {"^ot:originalLabel": "Epichloe yangzii  Rk", "^ot:ottId": 4058914, "^ot:ottTaxonName": "Epichloe yangzii", "^ot:treebaseOTUId": "Tl900744"}, "otu359579": {"^ot:originalLabel": "Neotyphodium pampeanum  Ba 4", "^ot:ottId": 454281, "^ot:ottTaxonName": "Neotyphodium pampeanum", "^ot:treebaseOTUId": "Tl900745"}, "otu359580": {"^ot:originalLabel": "Epichloe glyceriae  Gs2", "^ot:ottId": 89725, "^ot:ottTaxonName": "Epichloe glyceriae", "^ot:treebaseOTUId": "Tl900746"}, "otu359581": {"^ot:originalLabel": "Epichloe brachyelytri  Bee", "^ot:ottId": 905108, "^ot:ottTaxonName": "Epichloe brachyelytri", "^ot:treebaseOTUId": "Tl900747"}, "otu359582": {"^ot:originalLabel": "Neotyphodium species FaTG-2", "^ot:ottId": 741639, "^ot:ottTaxonName": "Neotyphodium", "^ot:treebaseOTUId": "Tl900748"}, "otu359583": {"^ot:originalLabel": "Epichloe species BlaTG-2 P12C1", "^ot:ottId": 908827, "^ot:ottTaxonName": "Epichloe", "^ot:treebaseOTUId": "Tl900749"}, "otu359584": {"^ot:originalLabel": "Neotyphodium species Pau", "^ot:ottId": 741639, "^ot:ottTaxonName": "Neotyphodium", "^ot:treebaseOTUId": "Tl900750"}, "otu359585": {"^ot:originalLabel": "Epichloe baconii  As", "^ot:ottId": 128044, "^ot:ottTaxonName": "Epichloe baconii", "^ot:treebaseOTUId": "Tl900751"}, "otu359586": {"^ot:originalLabel": "Epichloe typhina  Pn", "^ot:ottId": 103011, "^ot:ottTaxonName": "Epichloe typhina", "^ot:treebaseOTUId": "Tl900752"}, "otu359587": {"^ot:originalLabel": "Epichloe typhina  Php", "^ot:ottId": 103011, "^ot:ottTaxonName": "Epichloe typhina", "^ot:treebaseOTUId": "Tl900753"}, "otu359588": {"^ot:originalLabel": "Neotyphodium  species Phc", "^ot:ottId": 741639, "^ot:ottTaxonName": "Neotyphodium", "^ot:treebaseOTUId": "Tl900754"}, "otu359589": {"^ot:originalLabel": "Neotyphodium tembladerae  Fh 2", "^ot:ottId": 590981, "^ot:ottTaxonName": "Neotyphodium tembladerae", "^ot:treebaseOTUId": "Tl900755"}, "otu359590": {"^ot:originalLabel": "Neotyphodium chisosum  Se", "^ot:ottId": 852057, "^ot:ottTaxonName": "Neotyphodium chisosum", "^ot:treebaseOTUId": "Tl900756"}, "otu359591": {"^ot:originalLabel": "Neotyphodium species Hbo", "^ot:ottId": 741639, "^ot:ottTaxonName": "Neotyphodium", "^ot:treebaseOTUId": "Tl900757"}, "otu359592": {"^ot:originalLabel": "Neotyphodium tembladerae  Ba", "^ot:ottId": 590981, "^ot:ottTaxonName": "Neotyphodium tembladerae", "^ot:treebaseOTUId": "Tl900758"}, "otu359593": {"^ot:originalLabel": "Neotyphodium chisosum  Se 2", "^ot:ottId": 852057, "^ot:ottTaxonName": "Neotyphodium chisosum", "^ot:treebaseOTUId": "Tl900759"}, "otu359594": {"^ot:originalLabel": "Epichloe typhina P7", "^ot:ottId": 103011, "^ot:ottTaxonName": "Epichloe typhina", "^ot:treebaseOTUId": "Tl900760"}, "otu359595": {"^ot:originalLabel": "Epichloe species BlaTG-3 P2C2 ", "^ot:ottId": 908827, "^ot:ottTaxonName": "Epichloe", "^ot:treebaseOTUId": "Tl900761"}, "otu359596": {"^ot:originalLabel": "Epichloe amarillans  Ah", "^ot:ottId": 369201, "^ot:ottTaxonName": "Epichloe amarillans", "^ot:treebaseOTUId": "Tl900762"}, "otu359597": {"^ot:originalLabel": "Epichloe species BlaTG-3 P2C1", "^ot:ottId": 908827, "^ot:ottTaxonName": "Epichloe", "^ot:treebaseOTUId": "Tl900763"}, "otu359598": {"^ot:originalLabel": "Neotyphodium tembladerae  Fh", "^ot:ottId": 590981, "^ot:ottTaxonName": "Neotyphodium tembladerae", "^ot:treebaseOTUId": "Tl900764"}, "otu359599": {"^ot:originalLabel": "Epichloe sylvatica  Bs", "^ot:ottId": 380242, "^ot:ottTaxonName": "Epichloe sylvatica", "^ot:treebaseOTUId": "Tl900765"}, "otu359600": {"^ot:originalLabel": "Epichloe yangzii  Rk2", "^ot:ottId": 4058914, "^ot:ottTaxonName": "Epichloe yangzii", "^ot:treebaseOTUId": "Tl900766"}, "otu359601": {"^ot:originalLabel": "Neotyphodium species FaTG-2 3", "^ot:ottId": 741639, "^ot:ottTaxonName": "Neotyphodium", "^ot:treebaseOTUId": "Tl900767"}, "otu359602": {"^ot:originalLabel": "Epichloe poae  Psj", "^ot:ottId": 617883, "^ot:ottTaxonName": "Epichloe poae", "^ot:treebaseOTUId": "Tl900768"}, "otu359603": {"^ot:originalLabel": "Neotyphodium schardlii  Ca 2", "^ot:ottId": 4927906, "^ot:ottTaxonName": "Neotyphodium x schardlii", "^ot:treebaseOTUId": "Tl900769"}, "otu359604": {"^ot:originalLabel": "Neotyphodium occultans  Lrr 2", "^ot:ottId": 3700472, "^ot:ottTaxonName": "Neotyphodium occultans", "^ot:treebaseOTUId": "Tl900770"}, "otu359605": {"^ot:originalLabel": "Neotyphodium schardlii  Ca", "^ot:ottId": 4927906, "^ot:ottTaxonName": "Neotyphodium x schardlii", "^ot:treebaseOTUId": "Tl900771"}, "otu359606": {"^ot:originalLabel": "Epichloe typhina  Lp", "^ot:ottId": 103011, "^ot:ottTaxonName": "Epichloe typhina", "^ot:treebaseOTUId": "Tl900772"}, "otu359607": {"^ot:originalLabel": "Neotyphodium species FaTG-2 2", "^ot:ottId": 741639, "^ot:ottTaxonName": "Neotyphodium", "^ot:treebaseOTUId": "Tl900773"}, "otu359608": {"^ot:originalLabel": "Epichloe typhina  Ao", "^ot:ottId": 103011, "^ot:ottTaxonName": "Epichloe typhina", "^ot:treebaseOTUId": "Tl900774"}, "otu359609": {"^ot:originalLabel": "Epichloe species BlaTG-2 P3C2", "^ot:ottId": 908827, "^ot:ottTaxonName": "Epichloe", "^ot:treebaseOTUId": "Tl900775"}, "otu359610": {"^ot:originalLabel": "Neotyphodium coenophialum  La 3", "^ot:ottId": 400304, "^ot:ottTaxonName": "Neotyphodium coenophialum", "^ot:treebaseOTUId": "Tl900776"}, "otu359611": {"^ot:originalLabel": "Neotyphodium tembladerae  Bs2", "^ot:ottId": 590981, "^ot:ottTaxonName": "Neotyphodium tembladerae", "^ot:treebaseOTUId": "Tl900777"}, "otu359612": {"^ot:originalLabel": "Epichloe species BlaTG-4 P15C1", "^ot:ottId": 908827, "^ot:ottTaxonName": "Epichloe", "^ot:treebaseOTUId": "Tl900778"}, "otu359613": {"^ot:originalLabel": "Neotyphodium chisosum  Se 3", "^ot:ottId": 852057, "^ot:ottTaxonName": "Neotyphodium chisosum", "^ot:treebaseOTUId": "Tl900779"}, "otu359614": {"^ot:originalLabel": "Neotyphodium species FaTG-3", "^ot:ottId": 741639, "^ot:ottTaxonName": "Neotyphodium", "^ot:treebaseOTUId": "Tl900780"}, "otu359615": {"^ot:originalLabel": "Epichloe brachyelytri  Bee2", "^ot:ottId": 905108, "^ot:ottTaxonName": "Epichloe brachyelytri", "^ot:treebaseOTUId": "Tl900781"}, "otu359616": {"^ot:originalLabel": "Neotyphodium pampeanum  Ba 2", "^ot:ottId": 454281, "^ot:ottTaxonName": "Neotyphodium pampeanum", "^ot:treebaseOTUId": "Tl900782"}, "otu359617": {"^ot:originalLabel": "Neotyphodium species Sro 2", "^ot:ottId": 741639, "^ot:ottTaxonName": "Neotyphodium", "^ot:treebaseOTUId": "Tl900783"}, "otu359618": {"^ot:originalLabel": "Epichloe bromicola  Be", "^ot:ottId": 905106, "^ot:ottTaxonName": "Epichloe bromicola", "^ot:treebaseOTUId": "Tl900784"}, "otu359619": {"^ot:originalLabel": "Epichloe species BlaTG-4 P15C2", "^ot:ottId": 908827, "^ot:ottTaxonName": "Epichloe", "^ot:treebaseOTUId": "Tl900785"}, "otu359620": {"^ot:originalLabel": "Neotyphodium species FaTG-3 2", "^ot:ottId": 741639, "^ot:ottTaxonName": "Neotyphodium", "^ot:treebaseOTUId": "Tl900786"}, "otu359621": {"^ot:originalLabel": "Neotyphodium tembladerae  Ba2", "^ot:ottId": 590981, "^ot:ottTaxonName": "Neotyphodium tembladerae", "^ot:treebaseOTUId": "Tl900787"}, "otu359622": {"^ot:originalLabel": "Neotyphodium tembladerae  Ph2", "^ot:ottId": 590981, "^ot:ottTaxonName": "Neotyphodium tembladerae", "^ot:treebaseOTUId": "Tl900788"}, "otu359623": {"^ot:originalLabel": "Epichloe species BlaTG-2 P5C1", "^ot:ottId": 908827, "^ot:ottTaxonName": "Epichloe", "^ot:treebaseOTUId": "Tl900789"}, "otu359624": {"^ot:originalLabel": "Neotyphodium coenophialum  La", "^ot:ottId": 400304, "^ot:ottTaxonName": "Neotyphodium coenophialum", "^ot:treebaseOTUId": "Tl900790"}, "otu359625": {"^ot:originalLabel": "Neotyphodium tembladerae  Ph", "^ot:ottId": 590981, "^ot:ottTaxonName": "Neotyphodium tembladerae", "^ot:treebaseOTUId": "Tl900791"}, "otu359626": {"^ot:originalLabel": "Neotyphodium coenophialum  La 2", "^ot:ottId": 400304, "^ot:ottTaxonName": "Neotyphodium coenophialum", "^ot:treebaseOTUId": "Tl900792"}, "otu359627": {"^ot:originalLabel": "Epichloe species BlaTG-3 P10C1", "^ot:ottId": 908827, "^ot:ottTaxonName": "Epichloe", "^ot:treebaseOTUId": "Tl900793"}, "otu359628": {"^ot:originalLabel": "Epichloe typhina  Pp", "^ot:ottId": 103011, "^ot:ottTaxonName": "Epichloe typhina", "^ot:treebaseOTUId": "Tl900794"}, "otu359629": {"^ot:originalLabel": "Epichloe species BlaTG-2 P4C2", "^ot:ottId": 908827, "^ot:ottTaxonName": "Epichloe", "^ot:treebaseOTUId": "Tl900795"}, "otu359630": {"^ot:originalLabel": "Epichloe baconii  At", "^ot:ottId": 128044, "^ot:ottTaxonName": "Epichloe baconii", "^ot:treebaseOTUId": "Tl900796"}, "otu359631": {"^ot:originalLabel": "Neotyphodium species Hbo 2", "^ot:ottId": 741639, "^ot:ottTaxonName": "Neotyphodium", "^ot:treebaseOTUId": "Tl900797"}, "otu359632": {"^ot:originalLabel": "Epichloe baconii  Cv", "^ot:ottId": 128044, "^ot:ottTaxonName": "Epichloe baconii", "^ot:treebaseOTUId": "Tl900798"}, "otu359633": {"^ot:originalLabel": "Neotyphodium species Hbo 3", "^ot:ottId": 741639, "^ot:ottTaxonName": "Neotyphodium", "^ot:treebaseOTUId": "Tl900799"}, "otu359634": {"^ot:originalLabel": "Neotyphodium occultans  Lrr", "^ot:ottId": 3700472, "^ot:ottTaxonName": "Neotyphodium occultans", "^ot:treebaseOTUId": "Tl900800"}, "otu359635": {"^ot:originalLabel": "Epichloe typhina  Bp", "^ot:ottId": 103011, "^ot:ottTaxonName": "Epichloe typhina", "^ot:treebaseOTUId": "Tl900801"}, "otu359636": {"^ot:originalLabel": "Epichloe amarillans  Ap", "^ot:ottId": 369201, "^ot:ottTaxonName": "Epichloe amarillans", "^ot:treebaseOTUId": "Tl900802"}, "otu359637": {"^ot:originalLabel": "Epichloe amarillans  So", "^ot:ottId": 369201, "^ot:ottTaxonName": "Epichloe amarillans", "^ot:treebaseOTUId": "Tl900803"}, "otu359638": {"^ot:originalLabel": "Epichloe typhina  Ps", "^ot:ottId": 103011, "^ot:ottTaxonName": "Epichloe typhina", "^ot:treebaseOTUId": "Tl900804"}, "otu359639": {"^ot:originalLabel": "Neotyphodium  species Phc 2", "^ot:ottId": 741639, "^ot:ottTaxonName": "Neotyphodium", "^ot:treebaseOTUId": "Tl900805"}, "otu359640": {"^ot:originalLabel": "Neotyphodium pampeanum  Ba", "^ot:ottId": 454281, "^ot:ottTaxonName": "Neotyphodium pampeanum", "^ot:treebaseOTUId": "Tl900806"}, "otu359641": {"^ot:originalLabel": "Neotyphodium species Bp", "^ot:ottId": 741639, "^ot:ottTaxonName": "Neotyphodium", "^ot:treebaseOTUId": "Tl900807"}, "otu359642": {"^ot:originalLabel": "Neotyphodium tembladerae  Bs", "^ot:ottId": 590981, "^ot:ottTaxonName": "Neotyphodium tembladerae", "^ot:treebaseOTUId": "Tl900808"}, "otu359643": {"^ot:originalLabel": "Epichloe festucae  Fl", "^ot:ottId": 137209, "^ot:ottTaxonName": "Epichloe festucae", "^ot:treebaseOTUId": "Tl900809"}}}}, "treesById": {"trees2486": {"@otus": "otus2486", "^ot:treeElementOrder": ["tree5347"], "treeById": {"tree5347": {"@label": "ML, EF-1 + b-tubulin", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:changesCount", "^ot:branchLengthTimeUnit": "Myr", "^ot:curatedType": "Maximum likelihood ", "^ot:inGroupClade": "node924856", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:rootNodeId": "node924854", "^ot:specifiedRoot": "node924854", "^ot:tag": ["ML, EF-1 + b-tubulin"], "^ot:unrootedTree": false, "edgeBySourceId": {"node924854": {"edge924855": {"@source": "node924854", "@target": "node924855"}, "edge924856": {"@source": "node924854", "@target": "node924856"}}, "node924856": {"edge924857": {"@source": "node924856", "@target": "node924857"}, "edge924990": {"@source": "node924856", "@target": "node924990"}}, "node924857": {"edge924858": {"@source": "node924857", "@target": "node924858"}, "edge924866": {"@source": "node924857", "@target": "node924866"}, "edge924867": {"@source": "node924857", "@target": "node924867"}, "edge924868": {"@source": "node924857", "@target": "node924868"}, "edge924869": {"@source": "node924857", "@target": "node924869"}, "edge924984": {"@source": "node924857", "@target": "node924984"}, "edge924989": {"@source": "node924857", "@target": "node924989"}}, "node924858": {"edge924859": {"@source": "node924858", "@target": "node924859"}, "edge924864": {"@source": "node924858", "@target": "node924864"}, "edge924865": {"@source": "node924858", "@target": "node924865"}}, "node924859": {"edge924860": {"@source": "node924859", "@target": "node924860"}, "edge924861": {"@source": "node924859", "@target": "node924861"}, "edge924862": {"@source": "node924859", "@target": "node924862"}, "edge924863": {"@source": "node924859", "@target": "node924863"}}, "node924869": {"edge924870": {"@source": "node924869", "@target": "node924870"}, "edge924983": {"@source": "node924869", "@target": "node924983"}}, "node924870": {"edge924871": {"@source": "node924870", "@target": "node924871"}, "edge924979": {"@source": "node924870", "@target": "node924979"}, "edge924982": {"@source": "node924870", "@target": "node924982"}}, "node924871": {"edge924872": {"@source": "node924871", "@target": "node924872"}, "edge924975": {"@source": "node924871", "@target": "node924975"}}, "node924872": {"edge924873": {"@source": "node924872", "@target": "node924873"}, "edge924956": {"@source": "node924872", "@target": "node924956"}}, "node924873": {"edge924874": {"@source": "node924873", "@target": "node924874"}, "edge924906": {"@source": "node924873", "@target": "node924906"}}, "node924874": {"edge924875": {"@source": "node924874", "@target": "node924875"}, "edge924903": {"@source": "node924874", "@target": "node924903"}}, "node924875": {"edge924876": {"@source": "node924875", "@target": "node924876"}, "edge924900": {"@source": "node924875", "@target": "node924900"}}, "node924876": {"edge924877": {"@source": "node924876", "@target": "node924877"}, "edge924889": {"@source": "node924876", "@target": "node924889"}}, "node924877": {"edge924878": {"@source": "node924877", "@target": "node924878"}, "edge924882": {"@source": "node924877", "@target": "node924882"}, "edge924887": {"@source": "node924877", "@target": "node924887"}, "edge924888": {"@source": "node924877", "@target": "node924888"}}, "node924878": {"edge924879": {"@source": "node924878", "@target": "node924879"}, "edge924880": {"@source": "node924878", "@target": "node924880"}, "edge924881": {"@source": "node924878", "@target": "node924881"}}, "node924882": {"edge924883": {"@source": "node924882", "@target": "node924883"}, "edge924886": {"@source": "node924882", "@target": "node924886"}}, "node924883": {"edge924884": {"@source": "node924883", "@target": "node924884"}, "edge924885": {"@source": "node924883", "@target": "node924885"}}, "node924889": {"edge924890": {"@source": "node924889", "@target": "node924890"}, "edge924897": {"@source": "node924889", "@target": "node924897"}}, "node924890": {"edge924891": {"@source": "node924890", "@target": "node924891"}, "edge924896": {"@source": "node924890", "@target": "node924896"}}, "node924891": {"edge924892": {"@source": "node924891", "@target": "node924892"}, "edge924893": {"@source": "node924891", "@target": "node924893"}}, "node924893": {"edge924894": {"@source": "node924893", "@target": "node924894"}, "edge924895": {"@source": "node924893", "@target": "node924895"}}, "node924897": {"edge924898": {"@source": "node924897", "@target": "node924898"}, "edge924899": {"@source": "node924897", "@target": "node924899"}}, "node924900": {"edge924901": {"@source": "node924900", "@target": "node924901"}, "edge924902": {"@source": "node924900", "@target": "node924902"}}, "node924903": {"edge924904": {"@source": "node924903", "@target": "node924904"}, "edge924905": {"@source": "node924903", "@target": "node924905"}}, "node924906": {"edge924907": {"@source": "node924906", "@target": "node924907"}, "edge924931": {"@source": "node924906", "@target": "node924931"}, "edge924942": {"@source": "node924906", "@target": "node924942"}}, "node924907": {"edge924908": {"@source": "node924907", "@target": "node924908"}, "edge924930": {"@source": "node924907", "@target": "node924930"}}, "node924908": {"edge924909": {"@source": "node924908", "@target": "node924909"}, "edge924917": {"@source": "node924908", "@target": "node924917"}}, "node924909": {"edge924910": {"@source": "node924909", "@target": "node924910"}, "edge924916": {"@source": "node924909", "@target": "node924916"}}, "node924910": {"edge924911": {"@source": "node924910", "@target": "node924911"}, "edge924912": {"@source": "node924910", "@target": "node924912"}, "edge924913": {"@source": "node924910", "@target": "node924913"}, "edge924914": {"@source": "node924910", "@target": "node924914"}, "edge924915": {"@source": "node924910", "@target": "node924915"}}, "node924917": {"edge924918": {"@source": "node924917", "@target": "node924918"}, "edge924929": {"@source": "node924917", "@target": "node924929"}}, "node924918": {"edge924919": {"@source": "node924918", "@target": "node924919"}, "edge924928": {"@source": "node924918", "@target": "node924928"}}, "node924919": {"edge924920": {"@source": "node924919", "@target": "node924920"}, "edge924923": {"@source": "node924919", "@target": "node924923"}}, "node924920": {"edge924921": {"@source": "node924920", "@target": "node924921"}, "edge924922": {"@source": "node924920", "@target": "node924922"}}, "node924923": {"edge924924": {"@source": "node924923", "@target": "node924924"}, "edge924927": {"@source": "node924923", "@target": "node924927"}}, "node924924": {"edge924925": {"@source": "node924924", "@target": "node924925"}, "edge924926": {"@source": "node924924", "@target": "node924926"}}, "node924931": {"edge924932": {"@source": "node924931", "@target": "node924932"}, "edge924935": {"@source": "node924931", "@target": "node924935"}}, "node924932": {"edge924933": {"@source": "node924932", "@target": "node924933"}, "edge924934": {"@source": "node924932", "@target": "node924934"}}, "node924935": {"edge924936": {"@source": "node924935", "@target": "node924936"}, "edge924937": {"@source": "node924935", "@target": "node924937"}, "edge924938": {"@source": "node924935", "@target": "node924938"}}, "node924938": {"edge924939": {"@source": "node924938", "@target": "node924939"}, "edge924940": {"@source": "node924938", "@target": "node924940"}, "edge924941": {"@source": "node924938", "@target": "node924941"}}, "node924942": {"edge924943": {"@source": "node924942", "@target": "node924943"}, "edge924944": {"@source": "node924942", "@target": "node924944"}, "edge924945": {"@source": "node924942", "@target": "node924945"}, "edge924946": {"@source": "node924942", "@target": "node924946"}, "edge924947": {"@source": "node924942", "@target": "node924947"}, "edge924948": {"@source": "node924942", "@target": "node924948"}, "edge924949": {"@source": "node924942", "@target": "node924949"}, "edge924952": {"@source": "node924942", "@target": "node924952"}, "edge924953": {"@source": "node924942", "@target": "node924953"}, "edge924954": {"@source": "node924942", "@target": "node924954"}, "edge924955": {"@source": "node924942", "@target": "node924955"}}, "node924949": {"edge924950": {"@source": "node924949", "@target": "node924950"}, "edge924951": {"@source": "node924949", "@target": "node924951"}}, "node924956": {"edge924957": {"@source": "node924956", "@target": "node924957"}, "edge924972": {"@source": "node924956", "@target": "node924972"}}, "node924957": {"edge924958": {"@source": "node924957", "@target": "node924958"}, "edge924963": {"@source": "node924957", "@target": "node924963"}}, "node924958": {"edge924959": {"@source": "node924958", "@target": "node924959"}, "edge924962": {"@source": "node924958", "@target": "node924962"}}, "node924959": {"edge924960": {"@source": "node924959", "@target": "node924960"}, "edge924961": {"@source": "node924959", "@target": "node924961"}}, "node924963": {"edge924964": {"@source": "node924963", "@target": "node924964"}, "edge924967": {"@source": "node924963", "@target": "node924967"}}, "node924964": {"edge924965": {"@source": "node924964", "@target": "node924965"}, "edge924966": {"@source": "node924964", "@target": "node924966"}}, "node924967": {"edge924968": {"@source": "node924967", "@target": "node924968"}, "edge924971": {"@source": "node924967", "@target": "node924971"}}, "node924968": {"edge924969": {"@source": "node924968", "@target": "node924969"}, "edge924970": {"@source": "node924968", "@target": "node924970"}}, "node924972": {"edge924973": {"@source": "node924972", "@target": "node924973"}, "edge924974": {"@source": "node924972", "@target": "node924974"}}, "node924975": {"edge924976": {"@source": "node924975", "@target": "node924976"}, "edge924977": {"@source": "node924975", "@target": "node924977"}, "edge924978": {"@source": "node924975", "@target": "node924978"}}, "node924979": {"edge924980": {"@source": "node924979", "@target": "node924980"}, "edge924981": {"@source": "node924979", "@target": "node924981"}}, "node924984": {"edge924985": {"@source": "node924984", "@target": "node924985"}, "edge924986": {"@source": "node924984", "@target": "node924986"}, "edge924987": {"@source": "node924984", "@target": "node924987"}, "edge924988": {"@source": "node924984", "@target": "node924988"}}}, "nodeById": {"node924854": {"@root": true}, "node924855": {"@otu": "otu359595", "^ot:isTaxonExemplar": false}, "node924856": {}, "node924857": {}, "node924858": {}, "node924859": {}, "node924860": {"@otu": "otu359567", "^ot:isTaxonExemplar": false}, "node924861": {"@otu": "otu359629", "^ot:isTaxonExemplar": false}, "node924862": {"@otu": "otu359603", "^ot:isTaxonExemplar": true}, "node924863": {"@otu": "otu359639", "^ot:isTaxonExemplar": false}, "node924864": {"@otu": "otu359586", "^ot:isTaxonExemplar": true}, "node924865": {"@otu": "otu359564", "^ot:isTaxonExemplar": false}, "node924866": {"@otu": "otu359573", "^ot:isTaxonExemplar": false}, "node924867": {"@otu": "otu359594", "^ot:isTaxonExemplar": false}, "node924868": {"@otu": "otu359619", "^ot:isTaxonExemplar": false}, "node924869": {}, "node924870": {}, "node924871": {}, "node924872": {}, "node924873": {}, "node924874": {}, "node924875": {}, "node924876": {}, "node924877": {}, "node924878": {}, "node924879": {"@otu": "otu359597", "^ot:isTaxonExemplar": false}, "node924880": {"@otu": "otu359627", "^ot:isTaxonExemplar": false}, "node924881": {"@otu": "otu359612", "^ot:isTaxonExemplar": false}, "node924882": {}, "node924883": {}, "node924884": {"@otu": "otu359574"}, "node924885": {"@otu": "otu359591", "^ot:isTaxonExemplar": false}, "node924886": {"@otu": "otu359584", "^ot:isTaxonExemplar": false}, "node924887": {"@otu": "otu359641", "^ot:isTaxonExemplar": false}, "node924888": {"@otu": "otu359617", "^ot:isTaxonExemplar": false}, "node924889": {}, "node924890": {}, "node924891": {}, "node924892": {"@otu": "otu359618"}, "node924893": {}, "node924894": {"@otu": "otu359578", "^ot:isTaxonExemplar": true}, "node924895": {"@otu": "otu359600", "^ot:isTaxonExemplar": false}, "node924896": {"@otu": "otu359604", "^ot:isTaxonExemplar": true}, "node924897": {}, "node924898": {"@otu": "otu359590", "^ot:isTaxonExemplar": true}, "node924899": {"@otu": "otu359631", "^ot:isTaxonExemplar": false}, "node924900": {}, "node924901": {"@otu": "otu359562", "^ot:isTaxonExemplar": true}, "node924902": {"@otu": "otu359580", "^ot:isTaxonExemplar": false}, "node924903": {}, "node924904": {"@otu": "otu359581", "^ot:isTaxonExemplar": true}, "node924905": {"@otu": "otu359615", "^ot:isTaxonExemplar": false}, "node924906": {}, "node924907": {}, "node924908": {}, "node924909": {}, "node924910": {}, "node924911": {"@otu": "otu359609", "^ot:isTaxonExemplar": false}, "node924912": {"@otu": "otu359561", "^ot:isTaxonExemplar": false}, "node924913": {"@otu": "otu359623", "^ot:isTaxonExemplar": false}, "node924914": {"@otu": "otu359577", "^ot:isTaxonExemplar": false}, "node924915": {"@otu": "otu359583", "^ot:isTaxonExemplar": false}, "node924916": {"@otu": "otu359588", "^ot:isTaxonExemplar": false}, "node924917": {}, "node924918": {}, "node924919": {}, "node924920": {}, "node924921": {"@otu": "otu359637", "^ot:isTaxonExemplar": false}, "node924922": {"@otu": "otu359596", "^ot:isTaxonExemplar": true}, "node924923": {}, "node924924": {}, "node924925": {"@otu": "otu359636", "^ot:isTaxonExemplar": false}, "node924926": {"@otu": "otu359563", "^ot:isTaxonExemplar": false}, "node924927": {"@otu": "otu359633", "^ot:isTaxonExemplar": false}, "node924928": {"@otu": "otu359593", "^ot:isTaxonExemplar": false}, "node924929": {"@otu": "otu359569", "^ot:isTaxonExemplar": false}, "node924930": {"@otu": "otu359632", "^ot:isTaxonExemplar": true}, "node924931": {}, "node924932": {}, "node924933": {"@otu": "otu359630", "^ot:isTaxonExemplar": false}, "node924934": {"@otu": "otu359585", "^ot:isTaxonExemplar": false}, "node924935": {}, "node924936": {"@otu": "otu359634", "^ot:isTaxonExemplar": false}, "node924937": {"@otu": "otu359610", "^ot:isTaxonExemplar": false}, "node924938": {}, "node924939": {"@otu": "otu359601", "^ot:isTaxonExemplar": false}, "node924940": {"@otu": "otu359614", "^ot:isTaxonExemplar": false}, "node924941": {"@otu": "otu359607", "^ot:isTaxonExemplar": false}, "node924942": {}, "node924943": {"@otu": "otu359643", "^ot:isTaxonExemplar": true}, "node924944": {"@otu": "otu359575", "^ot:isTaxonExemplar": false}, "node924945": {"@otu": "otu359622", "^ot:isTaxonExemplar": false}, "node924946": {"@otu": "otu359642", "^ot:isTaxonExemplar": false}, "node924947": {"@otu": "otu359592", "^ot:isTaxonExemplar": false}, "node924948": {"@otu": "otu359589", "^ot:isTaxonExemplar": false}, "node924949": {}, "node924950": {"@otu": "otu359579", "^ot:isTaxonExemplar": false}, "node924951": {"@otu": "otu359616", "^ot:isTaxonExemplar": true}, "node924952": {"@otu": "otu359570", "^ot:isTaxonExemplar": false}, "node924953": {"@otu": "otu359624", "^ot:isTaxonExemplar": false}, "node924954": {"@otu": "otu359560", "^ot:isTaxonExemplar": false}, "node924955": {"@otu": "otu359582", "^ot:isTaxonExemplar": false}, "node924956": {}, "node924957": {}, "node924958": {}, "node924959": {}, "node924960": {"@otu": "otu359608", "^ot:isTaxonExemplar": false}, "node924961": {"@otu": "otu359576", "^ot:isTaxonExemplar": false}, "node924962": {"@otu": "otu359587", "^ot:isTaxonExemplar": false}, "node924963": {}, "node924964": {}, "node924965": {"@otu": "otu359565", "^ot:isTaxonExemplar": false}, "node924966": {"@otu": "otu359638", "^ot:isTaxonExemplar": false}, "node924967": {}, "node924968": {}, "node924969": {"@otu": "otu359606", "^ot:isTaxonExemplar": false}, "node924970": {"@otu": "otu359566"}, "node924971": {"@otu": "otu359620", "^ot:isTaxonExemplar": false}, "node924972": {}, "node924973": {"@otu": "otu359635", "^ot:isTaxonExemplar": false}, "node924974": {"@otu": "otu359599"}, "node924975": {}, "node924976": {"@otu": "otu359628", "^ot:isTaxonExemplar": false}, "node924977": {"@otu": "otu359605", "^ot:isTaxonExemplar": false}, "node924978": {"@otu": "otu359613", "^ot:isTaxonExemplar": false}, "node924979": {}, "node924980": {"@otu": "otu359568", "^ot:isTaxonExemplar": false}, "node924981": {"@otu": "otu359640", "^ot:isTaxonExemplar": false}, "node924982": {"@otu": "otu359626", "^ot:isTaxonExemplar": true}, "node924983": {"@otu": "otu359602"}, "node924984": {}, "node924985": {"@otu": "otu359625", "^ot:isTaxonExemplar": false}, "node924986": {"@otu": "otu359611", "^ot:isTaxonExemplar": false}, "node924987": {"@otu": "otu359621", "^ot:isTaxonExemplar": false}, "node924988": {"@otu": "otu359598", "^ot:isTaxonExemplar": true}, "node924989": {"@otu": "otu359572", "^ot:isTaxonExemplar": true}, "node924990": {"@otu": "otu359571", "^ot:isTaxonExemplar": true}}}}}}}}, "branch2sha": {"master": "19ec8a2da4b35c55075f155f9fb4d01281774fe5"}, "commentHTML": "<p>Couldn't find an article with that exact title, but the following (different journal) is very close, and I bet it's the correct reference:</p>\n<p><a target=\"_blank\" href=\"http://dx.doi.org/10.1111/1574-6941.12393\">http://dx.doi.org/10.1111/1574-6941.12393</a></p>\n<p>Interspecific hybridization and bioactive alkaloid variation increases diversity in endophytic Epichlo\u00eb species of Bromus laevipes\nNikki D. Charlton, Kelly D. Craven, Michelle E. Afkhami, Bradley A. Hall, Sita R. Ghimire, Carolyn A. Young\nFEMS Microbiology Ecology 2014</p>", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "1667b5cfa7b61d804d40ba5da8ad79657ee77f4c", "author_name": "Jonathan A Rees", "author_email": "jar398@mumble.net", "date": "Tue, 27 Sep 2016 20:17:53 +0000", "date_ISO_8601": "2016-09-27 20:17:53 +0000", "relative_date": "10 years ago", "message_subject": "Update document 'pg_2486' via OpenTree API"}, {"id": "294d01a1d5e656e28ab08f44bb85d654248259cb", "author_name": "Romina Gazis", "author_email": "gazisromina@gmail.com", "date": "Tue, 29 Sep 2015 15:34:30 +0000", "date_ISO_8601": "2015-09-29 15:34:30 +0000", "relative_date": "11 years ago", "message_subject": "Update Study #pg_2486 via OpenTree API"}, {"id": "51439d7c3af7d3d98f3078489f7c43a93e423f44", "author_name": "Romina Gazis", "author_email": "gazisromina@gmail.com", "date": "Tue, 29 Sep 2015 15:32:41 +0000", "date_ISO_8601": "2015-09-29 15:32:41 +0000", "relative_date": "11 years ago", "message_subject": "Update Study #pg_2486 via OpenTree API"}, {"id": "d33fb39501605772a074dffc82affa5344ea9a94", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Wed, 11 Jun 2014 22:18:34 -0500", "date_ISO_8601": "2014-06-11 22:18:34 -0500", "relative_date": "12 years ago", "message_subject": "corrected study ids"}, {"id": "593d6fbab385716dc0a12f3fc95133e8b7479b37", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 29 Apr 2014 20:05:19 -0500", "date_ISO_8601": "2014-04-29 20:05:19 -0500", "relative_date": "12 years ago", "message_subject": "initial commit with phylografter files from 29 Apr, 2014"}]}