{"sha": "7a486baf17f28360e5b100094e86d95ecc5c82bf", "data": {"nexml": {"@generator": "Phylografter nexml-json exporter", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "validator of NexSON constraints as well as constraints that would allow a study to be imported into the Open Tree of Life's phylogenetic synthesis tools", "@id": "peyotl-validator", "@name": "validate_ot_nexson.py", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": ["--embed", "--agent-only"], "otherProperty": [{"name": "pythonVersion", "value": "2.7.5+"}, {"name": "pythonImplementation", "value": "CPython"}]}}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0"}]}, "^ot:annotationEvents": {"annotation": [{"@dateCreated": "2015-09-29T15:54:12.067Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"searchContext": {"$": "All life"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}, {"@active": true, "@valid": true, "new": {"$": "$1"}, "old": {"$": "^(\\S*\\s+\\S*).*"}}]}, "useFuzzyMatching": true}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2015-09-29T15:54:12.067Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": []}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node935523", "@treesID": "trees2531", "@treeID": "tree5449", "@nodeID": "node935523"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node935524", "@treesID": "trees2531", "@treeID": "tree5449", "@nodeID": "node935524"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node935525", "@treesID": "trees2531", "@treeID": "tree5449", "@nodeID": "node935525"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node935526", "@treesID": "trees2531", "@treeID": "tree5449", "@nodeID": "node935526"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node935528", "@treesID": "trees2531", "@treeID": "tree5449", "@nodeID": "node935528"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node935535", "@treesID": "trees2531", "@treeID": "tree5449", "@nodeID": "node935535"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node935536", "@treesID": "trees2531", "@treeID": "tree5449", "@nodeID": "node935536"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node935537", "@treesID": "trees2531", "@treeID": "tree5449", "@nodeID": "node935537"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node935545", "@treesID": "trees2531", "@treeID": "tree5449", "@nodeID": "node935545"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node935546", "@treesID": "trees2531", "@treeID": "tree5449", "@nodeID": "node935546"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node935548", "@treesID": "trees2531", "@treeID": "tree5449", "@nodeID": "node935548"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node935549", "@treesID": "trees2531", "@treeID": "tree5449", "@nodeID": "node935549"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node935550", "@treesID": "trees2531", "@treeID": "tree5449", "@nodeID": "node935550"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node935551", "@treesID": "trees2531", "@treeID": "tree5449", "@nodeID": "node935551"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node935552", "@treesID": "trees2531", "@treeID": "tree5449", "@nodeID": "node935552"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node935553", "@treesID": "trees2531", "@treeID": "tree5449", "@nodeID": "node935553"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node935554", "@treesID": "trees2531", "@treeID": "tree5449", "@nodeID": "node935554"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node935556", "@treesID": "trees2531", "@treeID": "tree5449", "@nodeID": "node935556"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node935563", "@treesID": "trees2531", "@treeID": "tree5449", "@nodeID": "node935563"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node935564", "@treesID": "trees2531", "@treeID": "tree5449", "@nodeID": "node935564"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node935565", "@treesID": "trees2531", "@treeID": "tree5449", "@nodeID": "node935565"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node935567", "@treesID": "trees2531", "@treeID": "tree5449", "@nodeID": "node935567"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node935568", "@treesID": "trees2531", "@treeID": "tree5449", "@nodeID": "node935568"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu363685", "otu363702", "otu363705", "otu363707"], "refersTo": {"@top": "otus", "@idref": "otus2531", "@otusID": "otus2531"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu363686", "otu363687", "otu363691", "otu363692"], "refersTo": {"@top": "otus", "@idref": "otus2531", "@otusID": "otus2531"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu363688", "otu363696", "otu363700", "otu363704", "otu363706", "otu363714"], "refersTo": {"@top": "otus", "@idref": "otus2531", "@otusID": "otus2531"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu363690", "otu363699", "otu363703", "otu363712"], "refersTo": {"@top": "otus", "@idref": "otus2531", "@otusID": "otus2531"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu363695", "otu363715"], "refersTo": {"@top": "otus", "@idref": "otus2531", "@otusID": "otus2531"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu363698", "otu363709", "otu363711"], "refersTo": {"@top": "otus", "@idref": "otus2531", "@otusID": "otus2531"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree5449", "@treesID": "trees2531", "@treeID": "tree5449"}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": ["tree5449"], "^ot:comment": "", "^ot:curatorName": ["Romina Gazis"], "^ot:dataDeposit": {"@href": "http://purl.org/phylo/treebase/phylows/study/TB2:S905"}, "^ot:focalClade": 412519, "^ot:focalCladeOTTTaxonName": "Cylindrocladium (genus ncbi:40266 in family Nectriaceae)", "^ot:notIntendedForSynthesis": false, "^ot:otusElementOrder": ["otus2531"], "^ot:studyId": "pg_2531", "^ot:studyPublication": {"@href": ""}, "^ot:studyPublicationReference": "Crous P., Groenewald J., & Hill C. 2002. Cylindrocladium pseudonaviculatum sp. nov. from New Zealand, and new Cylindrocladium records from Vietnam. Sydowia, 54: 23-33.", "^ot:studyYear": 2002, "^ot:tag": [], "^ot:treesElementOrder": ["trees2531"], "^xhtml:license": {"@href": "http://creativecommons.org/publicdomain/zero/1.0/", "@name": "CC0"}, "otusById": {"otus2531": {"otuById": {"otu363684": {"^ot:originalLabel": "Cylindrocladium flexuosum STE U 2536", "^ot:ottId": 426053, "^ot:ottTaxonName": "Calonectria clavata", "^ot:treebaseOTUId": "Tl10184"}, "otu363685": {"^ot:originalLabel": "Cylindrocladium spathulatum ATCC 62616", "^ot:ottId": 598623, "^ot:ottTaxonName": "Calonectria pseudonaviculata", "^ot:treebaseOTUId": "Tl10185"}, "otu363686": {"^ot:originalLabel": "Cylindrocladium gracile STE U 623", "^ot:ottId": 218449, "^ot:ottTaxonName": "Calonectria gracilis", "^ot:treebaseOTUId": "Tl10186"}, "otu363687": {"^ot:originalLabel": "Cylindrocladium gracile PC 551197", "^ot:ottId": 218449, "^ot:ottTaxonName": "Calonectria gracilis", "^ot:treebaseOTUId": "Tl10187"}, "otu363688": {"^ot:originalLabel": "Cylindrocladium insulare STE U 954", "^ot:ottId": 5481860, "^ot:ottTaxonName": "Cylindrocladium insulare", "^ot:treebaseOTUId": "Tl10188"}, "otu363689": {"^ot:originalLabel": "Cylindrocladium graciloideum STE U 1153", "^ot:ottId": 470872, "^ot:ottTaxonName": "Calonectria gracilipes", "^ot:treebaseOTUId": "Tl10189"}, "otu363690": {"^ot:originalLabel": "Cylindrocladium scoparium ATCC 46300", "^ot:ottId": 716781, "^ot:ottTaxonName": "Calonectria morganii", "^ot:treebaseOTUId": "Tl10190"}, "otu363691": {"^ot:originalLabel": "Cylindrocladium gracile STE U 1586", "^ot:ottId": 218449, "^ot:ottTaxonName": "Calonectria gracilis", "^ot:treebaseOTUId": "Tl10191"}, "otu363692": {"^ot:originalLabel": "Cylindrocladium pseudogracile AR 2677", "^ot:ottId": 218449, "^ot:ottTaxonName": "Calonectria gracilis", "^ot:treebaseOTUId": "Tl10192"}, "otu363693": {"^ot:originalLabel": "Cylindrocladium mexicanum STE U 927", "^ot:ottId": 949793, "^ot:ottTaxonName": "Calonectria mexicana", "^ot:treebaseOTUId": "Tl10193"}, "otu363694": {"^ot:originalLabel": "Cylindrocladium gordoniae STE U 3136A", "^ot:ottId": 598631, "^ot:ottTaxonName": "Calonectria gordoniae", "^ot:treebaseOTUId": "Tl10194"}, "otu363695": {"^ot:originalLabel": "Cylindrocladium naviculatum STE U 627", "^ot:ottId": 305943, "^ot:ottTaxonName": "Calonectria naviculata", "^ot:treebaseOTUId": "Tl10195"}, "otu363696": {"^ot:originalLabel": "Cylindrocladium insulare STE U 3199", "^ot:ottId": 5481860, "^ot:ottTaxonName": "Cylindrocladium insulare", "^ot:treebaseOTUId": "Tl10196"}, "otu363697": {"^ot:originalLabel": "Cylindrocladium candelabrum STE U 1674", "^ot:ottId": 185252, "^ot:ottTaxonName": "Calonectria scoparia", "^ot:treebaseOTUId": "Tl10197"}, "otu363698": {"^ot:originalLabel": "Cylindrocladium pauciramosum STE U 972", "^ot:ottId": 949805, "^ot:ottTaxonName": "Calonectria pauciramosa", "^ot:treebaseOTUId": "Tl10198"}, "otu363699": {"^ot:originalLabel": "Cylindrocladium scoparium STE U 1720", "^ot:ottId": 716781, "^ot:ottTaxonName": "Calonectria morganii", "^ot:treebaseOTUId": "Tl10199"}, "otu363700": {"^ot:originalLabel": "Cylindrocladium insulare STE U 768", "^ot:ottId": 5481860, "^ot:ottTaxonName": "Cylindrocladium insulare", "^ot:treebaseOTUId": "Tl10200"}, "otu363701": {"^ot:originalLabel": "Fusarium subglutinans NRRL 22016", "^ot:ottId": 5317102, "^ot:ottTaxonName": "Gibberella fujikuroi", "^ot:treebaseOTUId": "Tl10201"}, "otu363702": {"^ot:originalLabel": "Cylindrocladium pseudonaviculatum STE U 3399", "^ot:ottId": 598623, "^ot:ottTaxonName": "Calonectria pseudonaviculata", "^ot:treebaseOTUId": "Tl10202"}, "otu363703": {"^ot:originalLabel": "Cylindrocladium scoparium STE U 1722", "^ot:ottId": 716781, "^ot:ottTaxonName": "Calonectria morganii", "^ot:treebaseOTUId": "Tl10203"}, "otu363704": {"^ot:originalLabel": "Cylindrocladium insulare STE U 3219", "^ot:ottId": 5481860, "^ot:ottTaxonName": "Cylindrocladium insulare", "^ot:treebaseOTUId": "Tl10204"}, "otu363705": {"^ot:originalLabel": "Cylindrocladium pseudonaviculatum STE U 3570", "^ot:ottId": 598623, "^ot:ottTaxonName": "Calonectria pseudonaviculata", "^ot:treebaseOTUId": "Tl10205"}, "otu363706": {"^ot:originalLabel": "Cylindrocladium insulare STE U 616", "^ot:ottId": 5481860, "^ot:ottTaxonName": "Cylindrocladium insulare", "^ot:treebaseOTUId": "Tl10206"}, "otu363707": {"^ot:originalLabel": "Cylindrocladium pseudonaviculatum STE U 3613", "^ot:ottId": 598623, "^ot:ottTaxonName": "Calonectria pseudonaviculata", "^ot:treebaseOTUId": "Tl10207"}, "otu363708": {"^ot:originalLabel": "Cylindrocladium quinqueseptatum STE U 516", "^ot:ottId": 570496, "^ot:ottTaxonName": "Calonectria quinqueseptata", "^ot:treebaseOTUId": "Tl10208"}, "otu363709": {"^ot:originalLabel": "Cylindrocladium pauciramosum STE U 3207", "^ot:ottId": 949805, "^ot:ottTaxonName": "Calonectria pauciramosa", "^ot:treebaseOTUId": "Tl10209"}, "otu363710": {"^ot:originalLabel": "Cylindrocladium hawksworthii MUCL 30866", "^ot:ottId": 732624, "^ot:ottTaxonName": "Calonectria hawksworthii", "^ot:treebaseOTUId": "Tl10210"}, "otu363711": {"^ot:originalLabel": "Cylindrocladium pauciramosum STE U 416", "^ot:ottId": 949805, "^ot:ottTaxonName": "Calonectria pauciramosa", "^ot:treebaseOTUId": "Tl10211"}, "otu363712": {"^ot:originalLabel": "Cylindrocladium scoparium ATCC 38227", "^ot:ottId": 716781, "^ot:ottTaxonName": "Calonectria morganii", "^ot:treebaseOTUId": "Tl10212"}, "otu363713": {"^ot:originalLabel": "Cylindrocladium parasiticum CBS 190.50", "^ot:ottId": 470857, "^ot:ottTaxonName": "Calonectria ilicicola", "^ot:treebaseOTUId": "Tl10213"}, "otu363714": {"^ot:originalLabel": "Cylindrocladium insulare STE U 3211", "^ot:ottId": 5481860, "^ot:ottTaxonName": "Cylindrocladium insulare", "^ot:treebaseOTUId": "Tl10214"}, "otu363715": {"^ot:originalLabel": "Cylindrocladium naviculatum STE U 628", "^ot:ottId": 305943, "^ot:ottTaxonName": "Calonectria naviculata", "^ot:treebaseOTUId": "Tl10215"}, "otu363716": {"^ot:originalLabel": "Cylindrocladium floridanum ATCC 18882", "^ot:ottId": 716777, "^ot:ottTaxonName": "Calonectria kyotensis", "^ot:treebaseOTUId": "Tl133462"}}}}, "treesById": {"trees2531": {"@otus": "otus2531", "^ot:treeElementOrder": ["tree5449"], "treeById": {"tree5449": {"@label": "MP, b-tub", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:changesCount", "^ot:branchLengthTimeUnit": "Myr", "^ot:curatedType": "Maximum parsimony ", "^ot:inGroupClade": "node935514", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:rootNodeId": "node935512", "^ot:specifiedRoot": "node935512", "^ot:tag": ["b-tub"], "^ot:unrootedTree": false, "edgeBySourceId": {"node935512": {"edge935513": {"@source": "node935512", "@target": "node935513"}, "edge935514": {"@source": "node935512", "@target": "node935514"}}, "node935514": {"edge935515": {"@source": "node935514", "@target": "node935515"}, "edge935557": {"@source": "node935514", "@target": "node935557"}}, "node935515": {"edge935516": {"@source": "node935515", "@target": "node935516"}, "edge935541": {"@source": "node935515", "@target": "node935541"}}, "node935516": {"edge935517": {"@source": "node935516", "@target": "node935517"}, "edge935538": {"@source": "node935516", "@target": "node935538"}}, "node935517": {"edge935518": {"@source": "node935517", "@target": "node935518"}, "edge935532": {"@source": "node935517", "@target": "node935532"}}, "node935518": {"edge935519": {"@source": "node935518", "@target": "node935519"}, "edge935527": {"@source": "node935518", "@target": "node935527"}}, "node935519": {"edge935520": {"@source": "node935519", "@target": "node935520"}, "edge935526": {"@source": "node935519", "@target": "node935526"}}, "node935520": {"edge935521": {"@source": "node935520", "@target": "node935521"}, "edge935522": {"@source": "node935520", "@target": "node935522"}}, "node935522": {"edge935523": {"@source": "node935522", "@target": "node935523"}, "edge935524": {"@source": "node935522", "@target": "node935524"}, "edge935525": {"@source": "node935522", "@target": "node935525"}}, "node935527": {"edge935528": {"@source": "node935527", "@target": "node935528"}, "edge935529": {"@source": "node935527", "@target": "node935529"}}, "node935529": {"edge935530": {"@source": "node935529", "@target": "node935530"}, "edge935531": {"@source": "node935529", "@target": "node935531"}}, "node935532": {"edge935533": {"@source": "node935532", "@target": "node935533"}, "edge935534": {"@source": "node935532", "@target": "node935534"}}, "node935534": {"edge935535": {"@source": "node935534", "@target": "node935535"}, "edge935536": {"@source": "node935534", "@target": "node935536"}, "edge935537": {"@source": "node935534", "@target": "node935537"}}, "node935538": {"edge935539": {"@source": "node935538", "@target": "node935539"}, "edge935540": {"@source": "node935538", "@target": "node935540"}}, "node935541": {"edge935542": {"@source": "node935541", "@target": "node935542"}, "edge935556": {"@source": "node935541", "@target": "node935556"}}, "node935542": {"edge935543": {"@source": "node935542", "@target": "node935543"}, "edge935555": {"@source": "node935542", "@target": "node935555"}}, "node935543": {"edge935544": {"@source": "node935543", "@target": "node935544"}, "edge935547": {"@source": "node935543", "@target": "node935547"}, "edge935552": {"@source": "node935543", "@target": "node935552"}, "edge935553": {"@source": "node935543", "@target": "node935553"}, "edge935554": {"@source": "node935543", "@target": "node935554"}}, "node935544": {"edge935545": {"@source": "node935544", "@target": "node935545"}, "edge935546": {"@source": "node935544", "@target": "node935546"}}, "node935547": {"edge935548": {"@source": "node935547", "@target": "node935548"}, "edge935549": {"@source": "node935547", "@target": "node935549"}, "edge935550": {"@source": "node935547", "@target": "node935550"}, "edge935551": {"@source": "node935547", "@target": "node935551"}}, "node935557": {"edge935558": {"@source": "node935557", "@target": "node935558"}, "edge935561": {"@source": "node935557", "@target": "node935561"}}, "node935558": {"edge935559": {"@source": "node935558", "@target": "node935559"}, "edge935560": {"@source": "node935558", "@target": "node935560"}}, "node935561": {"edge935562": {"@source": "node935561", "@target": "node935562"}, "edge935566": {"@source": "node935561", "@target": "node935566"}}, "node935562": {"edge935563": {"@source": "node935562", "@target": "node935563"}, "edge935564": {"@source": "node935562", "@target": "node935564"}, "edge935565": {"@source": "node935562", "@target": "node935565"}}, "node935566": {"edge935567": {"@source": "node935566", "@target": "node935567"}, "edge935568": {"@source": "node935566", "@target": "node935568"}}}, "nodeById": {"node935512": {"@root": true}, "node935513": {"@otu": "otu363701"}, "node935514": {}, "node935515": {}, "node935516": {}, "node935517": {}, "node935518": {}, "node935519": {}, "node935520": {}, "node935521": {"@otu": "otu363697"}, "node935522": {}, "node935523": {"@otu": "otu363698", "^ot:isTaxonExemplar": true}, "node935524": {"@otu": "otu363709", "^ot:isTaxonExemplar": false}, "node935525": {"@otu": "otu363711", "^ot:isTaxonExemplar": false}, "node935526": {"@otu": "otu363685", "^ot:isTaxonExemplar": true}, "node935527": {}, "node935528": {"@otu": "otu363692", "^ot:isTaxonExemplar": true}, "node935529": {}, "node935530": {"@otu": "otu363693"}, "node935531": {"@otu": "otu363689"}, "node935532": {}, "node935533": {"@otu": "otu363684"}, "node935534": {}, "node935535": {"@otu": "otu363687", "^ot:isTaxonExemplar": false}, "node935536": {"@otu": "otu363691", "^ot:isTaxonExemplar": false}, "node935537": {"@otu": "otu363686", "^ot:isTaxonExemplar": false}, "node935538": {}, "node935539": {"@otu": "otu363694"}, "node935540": {"@otu": "otu363708"}, "node935541": {}, "node935542": {}, "node935543": {}, "node935544": {}, "node935545": {"@otu": "otu363700", "^ot:isTaxonExemplar": false}, "node935546": {"@otu": "otu363688", "^ot:isTaxonExemplar": false}, "node935547": {}, "node935548": {"@otu": "otu363690", "^ot:isTaxonExemplar": true}, "node935549": {"@otu": "otu363712", "^ot:isTaxonExemplar": false}, "node935550": {"@otu": "otu363699", "^ot:isTaxonExemplar": false}, "node935551": {"@otu": "otu363703", "^ot:isTaxonExemplar": false}, "node935552": {"@otu": "otu363706", "^ot:isTaxonExemplar": false}, "node935553": {"@otu": "otu363696", "^ot:isTaxonExemplar": false}, "node935554": {"@otu": "otu363704", "^ot:isTaxonExemplar": false}, "node935555": {"@otu": "otu363710"}, "node935556": {"@otu": "otu363714", "^ot:isTaxonExemplar": true}, "node935557": {}, "node935558": {}, "node935559": {"@otu": "otu363716"}, "node935560": {"@otu": "otu363713"}, "node935561": {}, "node935562": {}, "node935563": {"@otu": "otu363705", "^ot:isTaxonExemplar": false}, "node935564": {"@otu": "otu363707", "^ot:isTaxonExemplar": false}, "node935565": {"@otu": "otu363702", "^ot:isTaxonExemplar": false}, "node935566": {}, "node935567": {"@otu": "otu363715", "^ot:isTaxonExemplar": true}, "node935568": {"@otu": "otu363695", "^ot:isTaxonExemplar": false}}}}}}}}, "branch2sha": {"master": "7a486baf17f28360e5b100094e86d95ecc5c82bf"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "b908df79eab88cf7198a6fd2eed087c293086442", "author_name": "Romina Gazis", "author_email": "gazisromina@gmail.com", "date": "Tue, 29 Sep 2015 15:57:05 +0000", "date_ISO_8601": "2015-09-29 15:57:05 +0000", "relative_date": "10 years ago", "message_subject": "Update Study #pg_2531 via OpenTree API"}, {"id": "d33fb39501605772a074dffc82affa5344ea9a94", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Wed, 11 Jun 2014 22:18:34 -0500", "date_ISO_8601": "2014-06-11 22:18:34 -0500", "relative_date": "12 years ago", "message_subject": "corrected study ids"}, {"id": "593d6fbab385716dc0a12f3fc95133e8b7479b37", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 29 Apr 2014 20:05:19 -0500", "date_ISO_8601": "2014-04-29 20:05:19 -0500", "relative_date": "12 years ago", "message_subject": "initial commit with phylografter files from 29 Apr, 2014"}]}