#NEXUS
BEGIN TAXA;
    Dimensions NTax = 60;
    TaxLabels 'Akashiwo sanguinea' 'Peridinium willei' 'Peridinium cinctum' 'Palatinus apiculatus' 'Scrippsiella trochoidea var aciculifera' 'Peridiniopsis polonicum' 'Thoracosphaera heimii' 'Peridinium aciculiferum' 'Chimonodinium lomnickii' 'Tyrannodinium berolinense' 'Pfiesteria piscicida' 'Cryptoperidiniopsis brodyi' 'Pseudopfiesteria shumwayae' 'Peridiniopsis borgei' 'Euplotes aediculatus' 'Theileria parva' 'Sarcocystis neurona' 'Hammondia hammondi' 'Toxoplasma gondii' 'Neospora caninum' 'Perkinsus andrewsi' 'Amphidinium carterae' 'Amphidinium massartii' 'Gonyaulax baltica' 'Ceratium fusus' 'Ceratium lineatum' 'Tovellia sanguinea' 'Tovellia coronata' 'Jadwigia applanata' 'Phalacroma porodictyum' 'Ornithocercus quadratus' 'Dinophysis norvegica' 'Dinophysis tripos' 'Borghiella tenuissima' 'Baldinia anauniensis' 'Symbiodinium natans' 'Polarella glacialis' 'Biecheleria pseudopalustris' 'Gymnodinium fuscum' 'Gymnodinium nolleri' 'Gymnodinium catenatum' 'Gyrodinium rubrum' 'Gyrodinium spirale' 'Prorocentrum micans' 'Prorocentrum minimum' 'Peridiniella catenata' 'Heterocapsa rotundata' 'Heterocapsa triquetra' 'Karlodinium veneficum' 'Takayama tuberculata' 'Takayama acrotrocha' 'Karenia umbella' 'Karenia brevis' 'Karenia mikimotoi' 'Scrippsiella trochoidea' 'Scrippsiella sweeneyae' 'Pfiesteria piscicida B' 'Tetrahymena pyriformis' 'Tetrahymena thermophila' 'Spathidium amphoriforme' ;
END;
BEGIN TREES;
    Tree tree6129 = ('Akashiwo sanguinea':0.122477,((((('Peridinium willei':0.077208,'Peridinium cinctum':0.033854):0.0698075):0.0698075,'Palatinus apiculatus':0.058075):0.019888,(('Scrippsiella trochoidea var aciculifera':0.018989,'Peridiniopsis polonicum':0.050503):0.007887,('Thoracosphaera heimii':0.058992,(('Peridinium aciculiferum':0.008803,'Chimonodinium lomnickii':0.013527):0.002974,('Tyrannodinium berolinense':0.018858,('Pfiesteria piscicida':0.016502,('Cryptoperidiniopsis brodyi':0.017341,'Pseudopfiesteria shumwayae':0.031754):0.003175):0.009888):0.040574):0.007702):0.013413):0.023785):0.017406,'Peridiniopsis borgei':0.096267));    Tree tree6130 = ('Euplotes aediculatus':0.407032,(((('Theileria parva':0.314694,(('Sarcocystis neurona':0.032238,('Hammondia hammondi':0.003471,('Toxoplasma gondii':0.006199,'Neospora caninum':0.002428)):0.047331):0.074124,('Perkinsus andrewsi':0.236949,(('Amphidinium carterae':0.028368,'Amphidinium massartii':0.021409):0.336632,(('Gonyaulax baltica':0.190736,('Ceratium fusus':0.055103,'Ceratium lineatum':0.018736):0.248507):0.076118,(('Tovellia sanguinea':0.069913,'Tovellia coronata':0.004949):0.212909,('Jadwigia applanata':0.094016,(('Phalacroma porodictyum':0.02573,('Ornithocercus quadratus':0.010427,('Dinophysis norvegica','Dinophysis tripos':0.002487):0.034672):0.01954):0.060186,((('Borghiella tenuissima':0.047736,'Baldinia anauniensis':0.080961):0.009176,('Symbiodinium natans':0.084255,('Polarella glacialis':0.01044,'Biecheleria pseudopalustris':0.011463):0.00464):0.042582):0.027679,(('Akashiwo sanguinea':0.092029,('Gymnodinium fuscum':0.065686,('Gymnodinium nolleri':0.002253,'Gymnodinium catenatum':0.014388):0.041579):0.04858):0.013213,((('Gyrodinium rubrum':0.024065,'Gyrodinium spirale':0.024962):0.042436,((('Prorocentrum micans':0.016852,'Prorocentrum minimum':0.005002):0.025081,('Peridiniella catenata':0.012224,('Heterocapsa rotundata':0.017699,'Heterocapsa triquetra':0.009121):0.023729):0.003048):0.004581,(('Karlodinium veneficum':0.017829,('Takayama tuberculata','Takayama acrotrocha':0.01651):0.004326):0.004456,('Karenia umbella':0.010677,('Karenia brevis':0.001038,'Karenia mikimotoi':0.011626):0.010052):0.014992):0.010378)),(('Palatinus apiculatus':0.043591,('Peridinium willei':0.060984,'Peridinium cinctum':0.0379):0.088557):0.020305,('Peridiniopsis borgei':0.060514,((('Peridinium aciculiferum':0.009862,'Chimonodinium lomnickii':0.00408):0.001188,('Peridiniopsis polonicum':0.026082,('Scrippsiella trochoidea var aciculifera':0.005627,('Scrippsiella trochoidea':0.002561,'Scrippsiella sweeneyae':0.002514):0.002531):0.001739):0.009873):0.001933,('Thoracosphaera heimii':0.031753,('Tyrannodinium berolinense':0.007418,('Pfiesteria piscicida',('Pseudopfiesteria shumwayae':0.015794,('Pfiesteria piscicida B','Cryptoperidiniopsis brodyi':0.010967))):0.013748):0.02124):0.007095):0.016636):0.006819):0.005167)):0.005212):0.003142):0.003185))):0.01639):0.104271):0.083575):0.039012):0.1340985):0.1340985,('Tetrahymena pyriformis','Tetrahymena thermophila':0.054796):0.217411):0.01874,'Spathidium amphoriforme':0.256571));
END;